From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1QrufD-0003i6-AQ for garchives@archives.gentoo.org; Fri, 12 Aug 2011 16:32:56 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 2BDC521C163; Fri, 12 Aug 2011 16:32:42 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id 76AF921C2C4 for ; Fri, 12 Aug 2011 16:32:41 +0000 (UTC) Received: from pelican.gentoo.org (unknown [66.219.59.40]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id E33881B4004 for ; Fri, 12 Aug 2011 16:32:40 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by pelican.gentoo.org (Postfix) with ESMTP id 4707680040 for ; Fri, 12 Aug 2011 16:32:40 +0000 (UTC) From: "Kacper Kowalik" To: gentoo-commits@lists.gentoo.org Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Kacper Kowalik" Message-ID: Subject: [gentoo-commits] proj/sci:master commit in: profiles/ X-VCS-Repository: proj/sci X-VCS-Files: profiles/use.local.desc X-VCS-Directories: profiles/ X-VCS-Committer: xarthisius X-VCS-Committer-Name: Kacper Kowalik X-VCS-Revision: e6011e079c76c71c643d1207246b44e2ae5bbf63 Date: Fri, 12 Aug 2011 16:32:40 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: X-Archives-Hash: 5d758c05e14d14db0b1b51cbb026ae8d commit: e6011e079c76c71c643d1207246b44e2ae5bbf63 Author: Kacper Kowalik (Xarthisius) gentoo org= > AuthorDate: Fri Aug 12 16:32:31 2011 +0000 Commit: Kacper Kowalik gentoo org> CommitDate: Fri Aug 12 16:32:31 2011 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc= ommit;h=3De6011e07 Update use.local.desc --- profiles/use.local.desc | 218 +++++++++++++++++++++++++++++++++--------= ------ 1 files changed, 152 insertions(+), 66 deletions(-) diff --git a/profiles/use.local.desc b/profiles/use.local.desc index ea6b884..597e7df 100644 --- a/profiles/use.local.desc +++ b/profiles/use.local.desc @@ -1,74 +1,160 @@ -# Copyright 1999-2006 Gentoo Foundation. -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ +# This file is deprecated as per GLEP 56 in favor of metadata.xml. Pleas= e add +# your descriptions to your package's metadata.xml ONLY. +# * generated automatically using egencache * =20 -# This file contains descriptions of local USE flags, and the ebuilds wh= ich -# contain them. -# Keep it sorted. - -# We keep here only the new USE flags introduced by packages in the over= lay. -# Ultimately, they will be merged into the main tree. - -sci-biology/tgi-tools:pvm - Use sys-cluster/pvm (Parallel Virtual Machin= e) and build the pvmsx utility -sci-chemistry/votca-csg:gromacs - Add support for gromacs file formats (= sci-chemistry/gromacs) -sci-geosciences/libtcd:non-commercial - Install tide constituent databas= e that is free for non-commercial use only +dev-java/hdf-java:hdf - Add support for the Hierarchical Data Format v.4= (sci-libs/hdf) +dev-lang/icc:eclipse - Install the dev-util/eclipse-sdk plugins +dev-lang/idb:eclipse - Install the dev-util/eclipse-sdk plugins +dev-lang/path64:debugger - Build PathDB +dev-lang/path64:native - Use EKOPath/Path64 for bootstraping +dev-libs/intel-common:compiler - Install the libraries needed for the ic= c and ifort compilers +dev-ml/mlgmpidl:mpfr - add support for mpfr, the library for multiple-pr= ecision floating-point computations with exact rounding +dev-python/cvxopt:glpk - Use GNU Linear Programming Kit +dev-python/ffnet:matplotlib - Use matplotlib for drawing +media-gfx/brlcad:benchmarks - Run benchmarks during test phase (need tes= t option enabled) +net-misc/dhcp:client - Install the dhclient program +net-misc/dhcp:infiniband - Enable ipoib support +net-misc/dhcp:server - Install the dhcpd and dhcrelay programs +sci-astronomy/psfex:plplot - Build with sci-libs/plplot to allow diagnos= tic plots during processing +sci-biology/estscan:intel - Use intel compiler +sci-chemistry/avogadro:glsl - Enable glsl features via GLEW. +sci-chemistry/gromacs:double-precision - More precise calculations at th= e expense of speed +sci-chemistry/gromacs:fkernels - Enable building of Fortran Kernels for = platforms that dont have assembly loops +sci-chemistry/gromacs:single-precision - Single precision version of gro= macs (default) +sci-chemistry/jmol:client-only - Install the viewer only, no applet file= s for httpd +sci-chemistry/pymol:apbs - Pymol supprt for sci-chemistry/apbs +sci-chemistry/pymol:numpy - Enable numpy support for Pymol +sci-chemistry/pymol:vmd - Builds molfile plugin support +sci-chemistry/pymol:web - Install Pymodule needed for web app support +sci-chemistry/rosetta:boinc - compile rosetta as a rosetta@home client +sci-chemistry/rosetta:boost - compile rosetta with boost supported code +sci-chemistry/votca-csg:boost - Compile against external boost headers f= rom dev-libs/boost +sci-chemistry/votca-csg:extras - Pull in extra applications from dev-lib= s/boost +sci-chemistry/votca-csg:gromacs - Add support for gromacs file formats t= hrough sci-chemistry/gromacs +sci-electronics/player:boost - Automatically generated description for b= oost +sci-electronics/player:festival - Automatically generated description fo= r festival +sci-electronics/player:openssl - Automatically generated description for= openssl +sci-electronics/player:sphinx2 - Automatically generated description for= sphinx2 +sci-geosciences/libtcd:non-commercial - Allows the use of a tide constit= uent database that is available for non-commercial use only. +sci-geosciences/qgis:grass - Add support for sci-geosciences/grass +sci-geosciences/xtide:non-commercial - Allows the use of a tide constitu= ent database that is available for non-commercial use only. +sci-libs/atlas:xblas - Build LAPACK with extra precision (needs sci-libs= /xblas) +sci-libs/bigdft:cuda - Add cuda support sci-libs/calculix-ccx:arpack - Add sparse eigen value support via sci-li= bs/arpack -sci-libs/factory:singular - Add support for sci-mathematics/Singular +sci-libs/factory:singular - Enable support for sci-mathematics/singular +sci-libs/fox:dom - Automatically generated description for dom +sci-libs/fox:fast - Automatically generated description for fast +sci-libs/fox:sax - Automatically generated description for sax +sci-libs/fox:wcml - Automatically generated description for wcml +sci-libs/fox:wxml - Automatically generated description for wxml sci-libs/gmsh:cgns - Enables cgns output support sci-libs/gmsh:chaco - Enables chaco partitioner support +sci-libs/gmsh:med - Enables med support sci-libs/gmsh:metis - Enables metis support +sci-libs/gmsh:netgen - Enable 3D Frontal triangulation using netgen lib sci-libs/gmsh:opencascade - Enable OpenCASCADE support -sci-libs/libfac:singular - Add support for sci-mathematics/Singular +sci-libs/gmsh:petsc - Enable sci-mathematics/petsc support +sci-libs/gmsh:taucs - Enable sci-libs/taucs support +sci-libs/gmsh:tetgen - Enable 3D delauny triangulation using tetgen lib +sci-libs/libcmatrix:atlas - Use of atlas blas implementation +sci-libs/libfac:singular - Automatically generated description for singu= lar +sci-libs/lwpr:octave - Add sci-mathematics/octave support +sci-libs/oasa:cairo - Add support for Cairo graphics library using dev-p= ython/pycairo +sci-libs/openblas:dynamic - Build dynamic architecture detection at run = time (for multi targets) +sci-libs/openblas:incblas - Build the CBLAS interface +sci-libs/openblas:int64 - Build the 64 bits integer library +sci-libs/openmm:cuda - Build Cuda lib +sci-libs/openmm:opencl - Build OpenCL lib +sci-libs/pagmo:kepler - Automatically generated description for kepler +sci-libs/pagmo:nlopt - Automatically generated description for nlopt sci-libs/votca-tools:boost - Compile against external boost headers (dev= -libs/boost) -sci-mathematics/gap:xtom - extra tables of marks +sci-libs/xdrfile:dmalloc - Enable use of Debug Malloc +sci-mathematics/Macaulay2:optimization - Accept upstream's choices for -= O option, i.e. -O3 almost everywhere. +sci-mathematics/algae:intel - Use icc as c compiler +sci-mathematics/apron:ppl - Enable optional interface to the Parma Polyh= edra Library +sci-mathematics/dolfin:cgal - Adds support for geometric algorithms with= sci-mathematics/cgal +sci-mathematics/dolfin:cholmod - Adds support for sparse Cholesky factor= ization with sci-libs/cholmod +sci-mathematics/dolfin:parmetis - Adds support for parallel graph partit= ioning with sci-libs/parmetis +sci-mathematics/dolfin:scotch - Adds support for graph partitioning with= sci-libs/scotch +sci-mathematics/dolfin:umfpack - Adds support for sparse solving with sc= i-libs/umfpack +sci-mathematics/frama-c:apron - ?apron? +sci-mathematics/frama-c:gtk - ?gtk? +sci-mathematics/frama-c:why - ?why? +sci-mathematics/gambit:X - Enable gui support using wxWidgets. +sci-mathematics/gap:xtom - Automatically generated description for xtom +sci-mathematics/giac:fltk - ?fltk? sci-mathematics/netgen:opencascade - Enable OpenCASCADE support -sci-misc/opencascade:draw-harness - Enable building of draw-harness -sci-misc/opencascade:stlport - Build OpenCASCADE with STLPort -sci-misc/opencascade:wok - Enable building of WOK -sci-misc/opennlp-tools:models - Install prebuild ME models (requires a t= on of disk space) -sci-misc/salome-component:openpbs - Enables openpbs support -sci-misc/salome-gui:corba - Enables corba support -sci-misc/salome-gui:glviewer - make glviewer module -sci-misc/salome-gui:occviewer - make occviewer module -sci-misc/salome-gui:plot2dviewer - make plot2dviewer module -sci-misc/salome-gui:pyconsole - make python console module -sci-misc/salome-gui:salomeobject - make salomeobject module -sci-misc/salome-gui:supervgraphviewer - make supervgraphviewer module -sci-misc/salome-gui:vtkviewer - make vtkviewer module -sci-misc/salome-kernel:openpbs - Enables openpbs support -sci-misc/salome-med:openpbs - Enables openpbs support -sci-visualization/nodemon:pbs - Adds support for PBS (Portable Batch Sys= tem) queries -sys-cluster/openib-drivers:cxgb3 - make CXGB3 module -sys-cluster/openib-drivers:ehca - make EHCA module -sys-cluster/openib-drivers:hpage-patch - apply huge pages patch -sys-cluster/openib-drivers:ipath - make IPATH module -sys-cluster/openib-drivers:iser - make ISER module -sys-cluster/openib-drivers:madeye - make MADEYE module -sys-cluster/openib-drivers:memtrack - enable momory tracking -sys-cluster/openib-drivers:mlx4 - make MLX4 module -sys-cluster/openib-drivers:rds - make RDS module -sys-cluster/openib-drivers:srp - make SRP module -sys-cluster/openib-drivers:vnic - make VNIC module -sys-cluster/openib-files:ehca - load EHCA module -sys-cluster/openib-files:ipath - load IPATH module -sys-cluster/openib-files:iser - load ISER module -sys-cluster/openib-files:mlx4 - load MLX4 module -sys-cluster/openib-files:rds - load RDS module -sys-cluster/openib-files:srp - load SRP module -sys-cluster/openib-files:vnic - load VNIC module -sys-cluster/openib-mvapich2:large-cluster - build _LARGE_CLUSTER configu= ration -sys-cluster/openib-mvapich2:medium-cluster - build _MEDIUM_CLUSTER confi= guration -sys-cluster/openib-mvapich2:rdma - use rdmacm -sys-cluster/openib-mvapich2:romio - enable ROMIO support -sys-cluster/openib-userspace:cxgb3 - include libcxgb3 package -sys-cluster/openib-userspace:dapl - add DAPL (Direct Access Provider Lib= rary) support -sys-cluster/openib-userspace:ehca - include libehca package -sys-cluster/openib-userspace:ipath - add PathScale HCA support -sys-cluster/openib-userspace:mstflint - include mstflint package -sys-cluster/openib-userspace:opensm - add OpenSM Subnet Management suppo= rt. -sys-cluster/openib-userspace:qlvnictools - include qlvnictools package -sys-cluster/openib-userspace:srptools - include srptools package -sys-cluster/openib-userspace:tvflash - include tvflash package -sys-cluster/openib:dapl - add DAPL (Direct Access Provider Library) supp= ort. -sys-cluster/openib:ipath - add PathScale HCA support. -sys-cluster/openib:opensm - add OpenSM Subnet Management support. +sci-mathematics/petsc:complex-scalars - Make scalars complex +sci-mathematics/petsc:hypre - Use HYPRE (sci-mathematics/hypre) for prec= onditioning +sci-mathematics/petsc:metis - Use METIS (sci-libs/parmetis) for partitio= ning +sci-mathematics/polybori:sage - Replace the standard python interface by= sage's python interface for easy integration in sage. +sci-mathematics/scilab:gui - Build the Java base graphical interface +sci-mathematics/scilab:matio - Enable support for MATLAB file through sc= i-libs/matio +sci-mathematics/scilab:umfpack - Adds support for sparse solving with sc= i-libs/umfpack +sci-mathematics/scilab:xcos - Enable building hybrid dynamic systems mod= eler and simulator Xcos +sci-mathematics/why:apron - ?apron? +sci-mathematics/why:coq - ?coq? +sci-mathematics/why:gappa - ?gappa? +sci-mathematics/why:gtk - ?gtk? +sci-mathematics/why:jessie - ?jessie? +sci-mathematics/why:pff - ?pff? +sci-misc/hfst:openfst - Add optional support for openfst backend library= (sci-misc/openfst) +sci-misc/hfst:sfst - Add optional support for sfst backend library (sci-= misc/sfst) +sci-misc/nco:ncap2 - Build next generation netcdf arithmetic processor (= needs dev-java/antlr) +sci-misc/nco:udunits - Add sci-libs/udunits files support +sci-misc/opennlp-tools:models - Automatically generated description for = models +sci-misc/salome-kernel:numpy - Enable support for dev-python/numpy +sci-misc/salome-med:metis - Add support for metis +sci-misc/salome-med:scotch - Add support for scotch +sci-physics/abinit:cuda - Enable support for nVidia CUDA +sci-physics/abinit:fox - Enable support for FoX Fortran XML library +sci-physics/abinit:vdwxc - Activate van der Waals exchange-correlation +sci-physics/atompaw:libxc - Use libxc for something +sci-physics/elk:libxc - Use sci-libs/libxc library of exchange-correlati= on functionals by ETSF. +sci-physics/espresso:examples - Installs the examples +sci-physics/espresso:packages - Installs extra subpackages +sci-physics/fastjet:allcxxplugins - Build all C++ plugins. +sci-physics/fastjet:allplugins - Build all standard plugins. +sci-physics/fastjet:cgal - Use sci-mathematics/cgal instead of bundled a= lgorithms. +sci-physics/root:clarens - Buld the Clarens and PEAC plug-ins, to use in= a GRID enabled analysis. +sci-physics/root:fits - Support for images and data from FITS files with= sci-libs/cfitsio +sci-physics/root:llvm - Build the new cling interactive interpreter base= d on sys-devel/llvm +sci-physics/root:math - Build all math related libraries plugins, needs = sci-libs/gsl +sci-physics/root:pythia6 - Builds the interface to Pythia-6 (sci-physics= /pythia) high energy physics generation events library +sci-physics/root:pythia8 - Builds the interface to Pythia-8 (sci-physics= /pythia) high energy physics generation events library +sci-physics/root:reflex - Builds the reflection database for the C++ int= erpretor +sci-physics/root:xrootd - Build the xrootd low latency file server +sci-visualization/gnuplot:gd - Add support for media-libs/gd. Needed for= GIF, JPEG, and PNG image output. +sci-visualization/gnuplot:qt4 - Build Qt4 terminal +sci-visualization/gnuplot:thin-splines - Enable thin plate splines +sci-visualization/nodemon:pbs - Enable support for the Portable Batch Sy= stem. +sci-visualization/paraview:adaptive - Enable the adaptive paraview appli= cation +sci-visualization/paraview:cg - Add support for nvidia's cg shaders +sci-visualization/paraview:coprocessing - Enable the coprocessing infras= tructure which is mainly useful in the context of clusters +sci-visualization/paraview:gui - Build paraview's gui not just the serve= r +sci-visualization/paraview:mysql - Build support for MySQL data item in = the XDMF format +sci-visualization/paraview:nvcontrol - Add NVCONTROL support for OpenGL = options +sci-visualization/paraview:plugins - Build and install additional plugin= s +sci-visualization/paraview:streaming - Enable streaming paraview applica= tion +sci-visualization/paraview:webkit - Built support for qt-webkit in vtk +sci-visualization/v_sim:abinit - Add support for ABINIT file formats sci= -physics/abinit +sci-visualization/v_sim:cube - Add support plug-in support for Cube file= s (densities and structures) +sci-visualization/v_sim:openbabel - Add support for ABINIT file formats = sci-chemistry/openbabel +sci-visualization/v_sim:xsf - plug-in support for files that follow the = XCrysDen format for structural positions and densities +sys-cluster/condor:classads - Enable the Condor's classified advertiseme= nt language +sys-cluster/condor:drmaa - Enable the Distributed Resource Management Ap= plication API +sys-cluster/condor:gcb - Enable condor to communicate over firewall/NAT +sys-cluster/condor:kbdd - Enable the Condor Keyboard Daemon to monitor l= ogged in X users for activity +sys-cluster/mpich2:mpi-threads - Enable MPI_THREAD_MULTIPLE +sys-cluster/mpich2:romio - Build the ROMIO MPI-IO component +sys-cluster/mvapich2:large-cluster - Automatically generated description= for large-cluster +sys-cluster/mvapich2:medium-cluster - Automatically generated descriptio= n for medium-cluster +sys-cluster/mvapich2:romio - Automatically generated description for rom= io +sys-cluster/openmpi:heterogeneous - Enable features required for heterog= eneous platform support +sys-cluster/openmpi:infiniband - Enable infiniband support +sys-cluster/openmpi:mpi-threads - Enable MPI_THREAD_MULTIPLE +sys-cluster/openmpi:pbs - Add support for the Portable Batch System (PBS= ) +sys-cluster/openmpi:romio - Build the ROMIO MPI-IO component +sys-cluster/openmpi:vt - Enable bundled VampirTrace support +sys-fs/ocfs2-tools:external - Enable external locking +virtual/mpi:romio - Enable romio, a high-performance portable MPI-IO