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* [gentoo-commits] gentoo-x86 commit in sci-biology/qrna: qrna-2.0.3c-r1.ebuild ChangeLog
@ 2010-03-10 21:13 Justin Lecher (jlec)
  0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher (jlec) @ 2010-03-10 21:13 UTC (permalink / raw
  To: gentoo-commits

jlec        10/03/10 21:13:07

  Modified:             ChangeLog
  Added:                qrna-2.0.3c-r1.ebuild
  Log:
  Respecting LDFLAGS, rebuilding all libs instead of using upstreams bundled ones, bug 308703
  (Portage version: 2.2_rc67/cvs/Linux x86_64)

Revision  Changes    Path
1.21                 sci-biology/qrna/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.21&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.21&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?r1=1.20&r2=1.21

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v
retrieving revision 1.20
retrieving revision 1.21
diff -u -r1.20 -r1.21
--- ChangeLog	5 Aug 2009 19:32:12 -0000	1.20
+++ ChangeLog	10 Mar 2010 21:13:06 -0000	1.21
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/qrna
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.20 2009/08/05 19:32:12 ssuominen Exp $
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.21 2010/03/10 21:13:06 jlec Exp $
+
+*qrna-2.0.3c-r1 (10 Mar 2010)
+
+  10 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org>
+  +qrna-2.0.3c-r1.ebuild, +files/qrna-2.0.3c-ldflags.patch:
+  Respecting LDFLAGS, rebuilding all libs instead of using upstreams bundled
+  ones, #308703
 
   05 Aug 2009; Samuli Suominen <ssuominen@gentoo.org> qrna-2.0.3c.ebuild,
   +files/qrna-2.0.3c-glibc-2.10.patch:



1.1                  sci-biology/qrna/qrna-2.0.3c-r1.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.1&content-type=text/plain

Index: qrna-2.0.3c-r1.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.1 2010/03/10 21:13:06 jlec Exp $

inherit eutils toolchain-funcs

DESCRIPTION="Prototype ncRNA genefinder"
HOMEPAGE="http://selab.janelia.org/software.html"
SRC_URI="mirror://gentoo/${P}.tar.bz2"

LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86"
IUSE=""

RDEPEND="dev-lang/perl
	sci-biology/hmmer"
DEPEND="${RDEPEND}"

src_unpack() {
	unpack ${A}
	cd "${S}"
	epatch "${FILESDIR}"/${P}-glibc-2.10.patch
	epatch "${FILESDIR}"/${P}-ldflags.patch
	sed -e "s/^CC.*/CC = $(tc-getCC)/" \
		-e "s/CFLAGS = -O/CFLAGS = ${CFLAGS}/" \
		-i src/Makefile squid/Makefile squid02/Makefile || die
	rm -v squid*/*.a
}

src_compile() {
	cd "${S}"/squid
	emake || die

	cd "${S}"/squid02
	emake || die

	cd "${S}"/src
	emake || die
}

src_install () {
	cd "${S}"/src
	dobin cfgbuild eqrna eqrna_sample main rnamat_main || die

	cd "${S}"
	dobin scripts/* || die

	newdoc 00README README || die
	insinto /usr/share/doc/${PF}
	doins documentation/* || die

	insinto /usr/share/${PN}/data
	doins lib/* || die
	insinto /usr/share/${PN}/demos
	doins Demos/* || die

	# Sets the path to the QRNA data files.
	doenvd "${FILESDIR}"/26qrna || die
}






^ permalink raw reply	[flat|nested] 4+ messages in thread

* [gentoo-commits] gentoo-x86 commit in sci-biology/qrna: qrna-2.0.3c-r1.ebuild ChangeLog
@ 2012-11-09 14:14 Justin Lecher (jlec)
  0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher (jlec) @ 2012-11-09 14:14 UTC (permalink / raw
  To: gentoo-commits

jlec        12/11/09 14:14:50

  Modified:             qrna-2.0.3c-r1.ebuild ChangeLog
  Log:
  sci-biology/qrna: Move to EAPI=4
  
  (Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)

Revision  Changes    Path
1.2                  sci-biology/qrna/qrna-2.0.3c-r1.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?r1=1.1&r2=1.2

Index: qrna-2.0.3c-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- qrna-2.0.3c-r1.ebuild	10 Mar 2010 21:13:06 -0000	1.1
+++ qrna-2.0.3c-r1.ebuild	9 Nov 2012 14:14:49 -0000	1.2
@@ -1,6 +1,8 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.1 2010/03/10 21:13:06 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.2 2012/11/09 14:14:49 jlec Exp $
+
+EAPI=4
 
 inherit eutils toolchain-funcs
 
@@ -13,48 +15,43 @@
 KEYWORDS="~amd64 ~ppc ~x86"
 IUSE=""
 
-RDEPEND="dev-lang/perl
+RDEPEND="
+	dev-lang/perl
 	sci-biology/hmmer"
 DEPEND="${RDEPEND}"
 
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-	epatch "${FILESDIR}"/${P}-glibc-2.10.patch
-	epatch "${FILESDIR}"/${P}-ldflags.patch
-	sed -e "s/^CC.*/CC = $(tc-getCC)/" \
-		-e "s/CFLAGS = -O/CFLAGS = ${CFLAGS}/" \
-		-i src/Makefile squid/Makefile squid02/Makefile || die
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${P}-glibc-2.10.patch \
+		"${FILESDIR}"/${P}-ldflags.patch
+	sed \
+		-e "s:^CC.*:CC = $(tc-getCC):" \
+		-e "/^AR/s:ar:$(tc-getAR):g" \
+		-e "/^RANLIB/s:ranlib:$(tc-getRANLIB):g" \
+		-e "/CFLAGS/s:=.*$:= ${CFLAGS}:" \
+		-i {src,squid,squid02}/Makefile || die
 	rm -v squid*/*.a
 }
 
 src_compile() {
-	cd "${S}"/squid
-	emake || die
-
-	cd "${S}"/squid02
-	emake || die
-
-	cd "${S}"/src
-	emake || die
+	local dir
+	for dir in squid squid02 src; do
+		emake -C ${dir}
+	done
 }
 
 src_install () {
-	cd "${S}"/src
-	dobin cfgbuild eqrna eqrna_sample main rnamat_main || die
-
-	cd "${S}"
-	dobin scripts/* || die
+	dobin src/{cfgbuild,eqrna,eqrna_sample,rnamat_main} scripts/*
 
-	newdoc 00README README || die
+	newdoc 00README README
 	insinto /usr/share/doc/${PF}
-	doins documentation/* || die
+	doins documentation/*
 
 	insinto /usr/share/${PN}/data
-	doins lib/* || die
+	doins lib/*
 	insinto /usr/share/${PN}/demos
-	doins Demos/* || die
+	doins Demos/*
 
 	# Sets the path to the QRNA data files.
-	doenvd "${FILESDIR}"/26qrna || die
+	doenvd "${FILESDIR}"/26qrna
 }



1.22                 sci-biology/qrna/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.22&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.22&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?r1=1.21&r2=1.22

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v
retrieving revision 1.21
retrieving revision 1.22
diff -u -r1.21 -r1.22
--- ChangeLog	10 Mar 2010 21:13:06 -0000	1.21
+++ ChangeLog	9 Nov 2012 14:14:49 -0000	1.22
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/qrna
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.21 2010/03/10 21:13:06 jlec Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.22 2012/11/09 14:14:49 jlec Exp $
+
+  09 Nov 2012; Justin Lecher <jlec@gentoo.org> qrna-2.0.3c-r1.ebuild:
+  Move to EAPI=4
 
 *qrna-2.0.3c-r1 (10 Mar 2010)
 





^ permalink raw reply	[flat|nested] 4+ messages in thread

* [gentoo-commits] gentoo-x86 commit in sci-biology/qrna: qrna-2.0.3c-r1.ebuild ChangeLog
@ 2012-11-10 12:06 Agostino Sarubbo (ago)
  0 siblings, 0 replies; 4+ messages in thread
From: Agostino Sarubbo (ago) @ 2012-11-10 12:06 UTC (permalink / raw
  To: gentoo-commits

ago         12/11/10 12:06:37

  Modified:             qrna-2.0.3c-r1.ebuild ChangeLog
  Log:
  Stable for amd64, wrt bug #441020
  
  (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)

Revision  Changes    Path
1.3                  sci-biology/qrna/qrna-2.0.3c-r1.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?r1=1.2&r2=1.3

Index: qrna-2.0.3c-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- qrna-2.0.3c-r1.ebuild	9 Nov 2012 14:14:49 -0000	1.2
+++ qrna-2.0.3c-r1.ebuild	10 Nov 2012 12:06:37 -0000	1.3
@@ -1,6 +1,6 @@
 # Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.2 2012/11/09 14:14:49 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.3 2012/11/10 12:06:37 ago Exp $
 
 EAPI=4
 
@@ -12,7 +12,7 @@
 
 LICENSE="GPL-2"
 SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86"
+KEYWORDS="amd64 ~ppc ~x86"
 IUSE=""
 
 RDEPEND="



1.23                 sci-biology/qrna/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.23&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.23&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?r1=1.22&r2=1.23

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v
retrieving revision 1.22
retrieving revision 1.23
diff -u -r1.22 -r1.23
--- ChangeLog	9 Nov 2012 14:14:49 -0000	1.22
+++ ChangeLog	10 Nov 2012 12:06:37 -0000	1.23
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/qrna
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.22 2012/11/09 14:14:49 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.23 2012/11/10 12:06:37 ago Exp $
+
+  10 Nov 2012; <ago@gentoo.org> qrna-2.0.3c-r1.ebuild:
+  Stable for amd64, wrt bug #441020
 
   09 Nov 2012; Justin Lecher <jlec@gentoo.org> qrna-2.0.3c-r1.ebuild:
   Move to EAPI=4





^ permalink raw reply	[flat|nested] 4+ messages in thread

* [gentoo-commits] gentoo-x86 commit in sci-biology/qrna: qrna-2.0.3c-r1.ebuild ChangeLog
@ 2012-12-06  4:15 PaweA Hajdan (phajdan.jr)
  0 siblings, 0 replies; 4+ messages in thread
From: PaweA Hajdan (phajdan.jr) @ 2012-12-06  4:15 UTC (permalink / raw
  To: gentoo-commits

phajdan.jr    12/12/06 04:15:42

  Modified:             qrna-2.0.3c-r1.ebuild ChangeLog
  Log:
  x86 stable wrt bug #441020
  
  (Portage version: 2.1.11.31/cvs/Linux i686, signed Manifest commit with key 30427902)

Revision  Changes    Path
1.4                  sci-biology/qrna/qrna-2.0.3c-r1.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?r1=1.3&r2=1.4

Index: qrna-2.0.3c-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- qrna-2.0.3c-r1.ebuild	10 Nov 2012 12:06:37 -0000	1.3
+++ qrna-2.0.3c-r1.ebuild	6 Dec 2012 04:15:42 -0000	1.4
@@ -1,6 +1,6 @@
 # Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.3 2012/11/10 12:06:37 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.4 2012/12/06 04:15:42 phajdan.jr Exp $
 
 EAPI=4
 
@@ -12,7 +12,7 @@
 
 LICENSE="GPL-2"
 SLOT="0"
-KEYWORDS="amd64 ~ppc ~x86"
+KEYWORDS="amd64 ~ppc x86"
 IUSE=""
 
 RDEPEND="



1.24                 sci-biology/qrna/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.24&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.24&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?r1=1.23&r2=1.24

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v
retrieving revision 1.23
retrieving revision 1.24
diff -u -r1.23 -r1.24
--- ChangeLog	10 Nov 2012 12:06:37 -0000	1.23
+++ ChangeLog	6 Dec 2012 04:15:42 -0000	1.24
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/qrna
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.23 2012/11/10 12:06:37 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.24 2012/12/06 04:15:42 phajdan.jr Exp $
+
+  06 Dec 2012; Pawel Hajdan jr <phajdan.jr@gentoo.org> qrna-2.0.3c-r1.ebuild:
+  x86 stable wrt bug #441020
 
   10 Nov 2012; <ago@gentoo.org> qrna-2.0.3c-r1.ebuild:
   Stable for amd64, wrt bug #441020





^ permalink raw reply	[flat|nested] 4+ messages in thread

end of thread, other threads:[~2012-12-06  4:15 UTC | newest]

Thread overview: 4+ messages (download: mbox.gz follow: Atom feed
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2010-03-10 21:13 [gentoo-commits] gentoo-x86 commit in sci-biology/qrna: qrna-2.0.3c-r1.ebuild ChangeLog Justin Lecher (jlec)
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2012-11-09 14:14 Justin Lecher (jlec)
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