[gentoo-commits] gentoo-x86 commit in sci-biology/qrna: qrna-2.0.3c-r1.ebuild ChangeLog

["Justin Lecher (jlec)" <jlec@gentoo.org>]

jlec        10/03/10 21:13:07

  Modified:             ChangeLog
  Added:                qrna-2.0.3c-r1.ebuild
  Log:
  Respecting LDFLAGS, rebuilding all libs instead of using upstreams bundled ones, bug 308703
  (Portage version: 2.2_rc67/cvs/Linux x86_64)

Revision  Changes    Path
1.21                 sci-biology/qrna/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.21&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.21&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?r1=1.20&r2=1.21

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v
retrieving revision 1.20
retrieving revision 1.21
diff -u -r1.20 -r1.21
--- ChangeLog	5 Aug 2009 19:32:12 -0000	1.20
+++ ChangeLog	10 Mar 2010 21:13:06 -0000	1.21
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/qrna
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.20 2009/08/05 19:32:12 ssuominen Exp $
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.21 2010/03/10 21:13:06 jlec Exp $
+
+*qrna-2.0.3c-r1 (10 Mar 2010)
+
+  10 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org>
+  +qrna-2.0.3c-r1.ebuild, +files/qrna-2.0.3c-ldflags.patch:
+  Respecting LDFLAGS, rebuilding all libs instead of using upstreams bundled
+  ones, #308703
 
   05 Aug 2009; Samuli Suominen <ssuominen@gentoo.org> qrna-2.0.3c.ebuild,
   +files/qrna-2.0.3c-glibc-2.10.patch:



1.1                  sci-biology/qrna/qrna-2.0.3c-r1.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.1&content-type=text/plain

Index: qrna-2.0.3c-r1.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.1 2010/03/10 21:13:06 jlec Exp $

inherit eutils toolchain-funcs

DESCRIPTION="Prototype ncRNA genefinder"
HOMEPAGE="http://selab.janelia.org/software.html"
SRC_URI="mirror://gentoo/${P}.tar.bz2"

LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86"
IUSE=""

RDEPEND="dev-lang/perl
	sci-biology/hmmer"
DEPEND="${RDEPEND}"

src_unpack() {
	unpack ${A}
	cd "${S}"
	epatch "${FILESDIR}"/${P}-glibc-2.10.patch
	epatch "${FILESDIR}"/${P}-ldflags.patch
	sed -e "s/^CC.*/CC = $(tc-getCC)/" \
		-e "s/CFLAGS = -O/CFLAGS = ${CFLAGS}/" \
		-i src/Makefile squid/Makefile squid02/Makefile || die
	rm -v squid*/*.a
}

src_compile() {
	cd "${S}"/squid
	emake || die

	cd "${S}"/squid02
	emake || die

	cd "${S}"/src
	emake || die
}

src_install () {
	cd "${S}"/src
	dobin cfgbuild eqrna eqrna_sample main rnamat_main || die

	cd "${S}"
	dobin scripts/* || die

	newdoc 00README README || die
	insinto /usr/share/doc/${PF}
	doins documentation/* || die

	insinto /usr/share/${PN}/data
	doins lib/* || die
	insinto /usr/share/${PN}/demos
	doins Demos/* || die

	# Sets the path to the QRNA data files.
	doenvd "${FILESDIR}"/26qrna || die
}