[gentoo-commits] gentoo-x86 commit in sci-biology/mira: metadata.xml mira-3.0.0.ebuild ChangeLog

[gentoo-commits] gentoo-x86 commit in sci-biology/mira: metadata.xml mira-3.0.0.ebuild ChangeLog

[Andrey Kislyuk (weaver)]

weaver      10/02/03 03:06:23

  Added:                metadata.xml mira-3.0.0.ebuild ChangeLog
  Log:
  New package, ebuild written by me
  (Portage version: 2.2_rc30/cvs/Linux x86_64)

Revision  Changes    Path
1.1                  sci-biology/mira/metadata.xml

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mira/metadata.xml?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mira/metadata.xml?rev=1.1&content-type=text/plain

Index: metadata.xml
===================================================================
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
	<maintainer>
		<email>weaver@gentoo.org</email>
		<name>Andrey Kislyuk</name>
	</maintainer>
	<herd>sci-biology</herd>
</pkgmetadata>



1.1                  sci-biology/mira/mira-3.0.0.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mira/mira-3.0.0.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mira/mira-3.0.0.ebuild?rev=1.1&content-type=text/plain

Index: mira-3.0.0.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.0.ebuild,v 1.1 2010/02/03 03:06:22 weaver Exp $

EAPI="2"

inherit base

DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina"
HOMEPAGE="http://www.chevreux.org/projects_mira.html"
SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2"

LICENSE="GPL-2"
SLOT="0"
IUSE="doc"
KEYWORDS="~amd64 ~x86"

CDEPEND=">=dev-libs/boost-1.35.0"
DEPEND="${CDEPEND}
	dev-libs/expat
	doc? ( >=app-text/texlive-core-2009 )"
RDEPEND="${CDEPEND}"

src_prepare() {
	find -name configure -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die
}

src_compile() {
	base_src_compile
	if use doc; then emake -C doc clean docs || die; fi
}

src_install() {
	einstall || die
	dodoc AUTHORS GETTING_STARTED NEWS README* HELP_WANTED THANKS INSTALL
	find doc/docs/man -type f | xargs doman
	find doc/docs/texinfo -type f | xargs doinfo
}



1.1                  sci-biology/mira/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mira/ChangeLog?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/mira/ChangeLog?rev=1.1&content-type=text/plain

Index: ChangeLog
===================================================================
# ChangeLog for sci-biology/mira
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.1 2010/02/03 03:06:22 weaver Exp $

*mira-3.0.0 (02 Feb 2010)

  02 Feb 2010; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
  +mira-3.0.0.ebuild:
  New package, ebuild written by me