* [gentoo-commits] gentoo-x86 commit in sci-biology/t-coffee: ChangeLog t-coffee-5.65.ebuild
@ 2008-04-14 23:16 Donnie Berkholz (dberkholz)
0 siblings, 0 replies; 4+ messages in thread
From: Donnie Berkholz (dberkholz) @ 2008-04-14 23:16 UTC (permalink / raw
To: gentoo-commits
dberkholz 08/04/14 23:16:36
Modified: ChangeLog
Added: t-coffee-5.65.ebuild
Log:
Bump.
(Portage version: 2.1.5_rc3)
Revision Changes Path
1.29 sci-biology/t-coffee/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.29&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.29&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?r1=1.28&r2=1.29
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v
retrieving revision 1.28
retrieving revision 1.29
diff -u -r1.28 -r1.29
--- ChangeLog 17 Feb 2008 11:02:35 -0000 1.28
+++ ChangeLog 14 Apr 2008 23:16:36 -0000 1.29
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/t-coffee
# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.28 2008/02/17 11:02:35 opfer Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.29 2008/04/14 23:16:36 dberkholz Exp $
+
+*t-coffee-5.65 (14 Apr 2008)
+
+ 14 Apr 2008; Donnie Berkholz <dberkholz@gentoo.org>;
+ +t-coffee-5.65.ebuild:
+ Bump.
17 Feb 2008; Christian Faulhammer <opfer@gentoo.org> t-coffee-5.31.ebuild:
stable x86/amd64, bug 208416
1.1 sci-biology/t-coffee/t-coffee-5.65.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild?rev=1.1&content-type=text/plain
Index: t-coffee-5.65.ebuild
===================================================================
# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild,v 1.1 2008/04/14 23:16:36 dberkholz Exp $
inherit toolchain-funcs flag-o-matic
DESCRIPTION="A multiple sequence alignment package"
LICENSE="t-coffee"
HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~ppc ~x86"
RESTRICT="mirror"
DEPEND="sci-biology/clustalw"
TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
S="${TCDIR}/t_coffee_source"
src_unpack() {
unpack ${A}
cd "${S}"
sed -e "s/CC = cc/CC = $(tc-getCC) ${CFLAGS}/" -i makefile || die \
"Failed to patch makefile."
}
die_compile() {
echo
eerror "If you experience an internal compiler error (consult the above"
eerror "messages), try compiling t-coffee using very modest compiler flags."
eerror "See bug #114745 on the Gentoo Bugzilla for more details."
die "Compilation failed"
}
src_compile() {
[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
emake all || die_compile
}
src_install() {
dobin "${TCDIR}"/bin/t_coffee \
|| die "Failed to install program."
insinto /usr/share/${PN}/lib/html
doins "${TCDIR}"/html/* \
|| die "Failed to install Web interface files."
cd "${TCDIR}"/doc
dodoc aln_compare.doc.txt README4T-COFFEE seq_reformat.doc.txt \
t_coffee_technical.txt t_coffee_tutorial.txt \
|| die "Failed to install text documentation."
dohtml t_coffee_technical.htm t_coffee_tutorial.htm \
|| die "Failed to install HTML documentation."
insinto /usr/share/doc/${PF}
doins t_coffee_technical.doc t_coffee_tutorial.doc \
|| die "Failed to install DOC documentation."
insinto /usr/share/${PN}/example
doins "${TCDIR}"/example/* \
|| die "Failed to install example files."
}
--
gentoo-commits@lists.gentoo.org mailing list
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/t-coffee: ChangeLog t-coffee-5.65.ebuild
@ 2008-07-06 21:37 Olivier Fisette (ribosome)
0 siblings, 0 replies; 4+ messages in thread
From: Olivier Fisette (ribosome) @ 2008-07-06 21:37 UTC (permalink / raw
To: gentoo-commits
ribosome 08/07/06 21:37:47
Modified: ChangeLog t-coffee-5.65.ebuild
Log:
Stable on amd64.
(Portage version: 2.1.4.4)
Revision Changes Path
1.31 sci-biology/t-coffee/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.31&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.31&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?r1=1.30&r2=1.31
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v
retrieving revision 1.30
retrieving revision 1.31
diff -u -r1.30 -r1.31
--- ChangeLog 27 May 2008 13:51:38 -0000 1.30
+++ ChangeLog 6 Jul 2008 21:37:46 -0000 1.31
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/t-coffee
# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.30 2008/05/27 13:51:38 je_fro Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.31 2008/07/06 21:37:46 ribosome Exp $
+
+ 06 Jul 2008; Olivier Fisette <ribosome@gentoo.org> t-coffee-5.65.ebuild:
+ Stable on amd64.
27 May 2008; Jeff Gardner <je_fro@gentoo.org> Manifest:
Fix Manifest for bug #223717
1.2 sci-biology/t-coffee/t-coffee-5.65.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild?r1=1.1&r2=1.2
Index: t-coffee-5.65.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- t-coffee-5.65.ebuild 14 Apr 2008 23:16:36 -0000 1.1
+++ t-coffee-5.65.ebuild 6 Jul 2008 21:37:46 -0000 1.2
@@ -1,6 +1,6 @@
# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild,v 1.1 2008/04/14 23:16:36 dberkholz Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild,v 1.2 2008/07/06 21:37:46 ribosome Exp $
inherit toolchain-funcs flag-o-matic
@@ -11,7 +11,7 @@
SLOT="0"
IUSE=""
-KEYWORDS="~amd64 ~ppc ~x86"
+KEYWORDS="amd64 ~ppc ~x86"
RESTRICT="mirror"
--
gentoo-commits@lists.gentoo.org mailing list
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/t-coffee: ChangeLog t-coffee-5.65.ebuild
@ 2008-07-08 5:58 Christian Faulhammer (opfer)
0 siblings, 0 replies; 4+ messages in thread
From: Christian Faulhammer (opfer) @ 2008-07-08 5:58 UTC (permalink / raw
To: gentoo-commits
opfer 08/07/08 05:58:48
Modified: ChangeLog t-coffee-5.65.ebuild
Log:
stable x86, bug 221165
(Portage version: 2.1.4.4)
Revision Changes Path
1.32 sci-biology/t-coffee/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.32&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.32&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?r1=1.31&r2=1.32
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v
retrieving revision 1.31
retrieving revision 1.32
diff -u -r1.31 -r1.32
--- ChangeLog 6 Jul 2008 21:37:46 -0000 1.31
+++ ChangeLog 8 Jul 2008 05:58:48 -0000 1.32
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/t-coffee
# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.31 2008/07/06 21:37:46 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.32 2008/07/08 05:58:48 opfer Exp $
+
+ 08 Jul 2008; Christian Faulhammer <opfer@gentoo.org> t-coffee-5.65.ebuild:
+ stable x86, bug 221165
06 Jul 2008; Olivier Fisette <ribosome@gentoo.org> t-coffee-5.65.ebuild:
Stable on amd64.
1.3 sci-biology/t-coffee/t-coffee-5.65.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild?r1=1.2&r2=1.3
Index: t-coffee-5.65.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- t-coffee-5.65.ebuild 6 Jul 2008 21:37:46 -0000 1.2
+++ t-coffee-5.65.ebuild 8 Jul 2008 05:58:48 -0000 1.3
@@ -1,6 +1,6 @@
# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild,v 1.2 2008/07/06 21:37:46 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild,v 1.3 2008/07/08 05:58:48 opfer Exp $
inherit toolchain-funcs flag-o-matic
@@ -11,7 +11,7 @@
SLOT="0"
IUSE=""
-KEYWORDS="amd64 ~ppc ~x86"
+KEYWORDS="amd64 ~ppc x86"
RESTRICT="mirror"
--
gentoo-commits@lists.gentoo.org mailing list
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/t-coffee: ChangeLog t-coffee-5.65.ebuild
@ 2008-07-14 17:01 Gysbert Wassenaar (nixnut)
0 siblings, 0 replies; 4+ messages in thread
From: Gysbert Wassenaar (nixnut) @ 2008-07-14 17:01 UTC (permalink / raw
To: gentoo-commits
nixnut 08/07/14 17:01:42
Modified: ChangeLog t-coffee-5.65.ebuild
Log:
Stable on ppc wrt bug 221165
(Portage version: 2.1.4.4)
Revision Changes Path
1.33 sci-biology/t-coffee/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.33&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?rev=1.33&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/ChangeLog?r1=1.32&r2=1.33
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v
retrieving revision 1.32
retrieving revision 1.33
diff -u -r1.32 -r1.33
--- ChangeLog 8 Jul 2008 05:58:48 -0000 1.32
+++ ChangeLog 14 Jul 2008 17:01:42 -0000 1.33
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/t-coffee
# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.32 2008/07/08 05:58:48 opfer Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.33 2008/07/14 17:01:42 nixnut Exp $
+
+ 14 Jul 2008; nixnut <nixnut@gentoo.org> t-coffee-5.65.ebuild:
+ Stable on ppc wrt bug 221165
08 Jul 2008; Christian Faulhammer <opfer@gentoo.org> t-coffee-5.65.ebuild:
stable x86, bug 221165
1.4 sci-biology/t-coffee/t-coffee-5.65.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild?r1=1.3&r2=1.4
Index: t-coffee-5.65.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- t-coffee-5.65.ebuild 8 Jul 2008 05:58:48 -0000 1.3
+++ t-coffee-5.65.ebuild 14 Jul 2008 17:01:42 -0000 1.4
@@ -1,6 +1,6 @@
# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild,v 1.3 2008/07/08 05:58:48 opfer Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild,v 1.4 2008/07/14 17:01:42 nixnut Exp $
inherit toolchain-funcs flag-o-matic
@@ -11,7 +11,7 @@
SLOT="0"
IUSE=""
-KEYWORDS="amd64 ~ppc x86"
+KEYWORDS="amd64 ppc x86"
RESTRICT="mirror"
--
gentoo-commits@lists.gentoo.org mailing list
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2008-07-08 5:58 [gentoo-commits] gentoo-x86 commit in sci-biology/t-coffee: ChangeLog t-coffee-5.65.ebuild Christian Faulhammer (opfer)
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2008-07-14 17:01 Gysbert Wassenaar (nixnut)
2008-07-06 21:37 Olivier Fisette (ribosome)
2008-04-14 23:16 Donnie Berkholz (dberkholz)
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