From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1RuTGo-0002Vf-Hc for garchives@archives.gentoo.org; Mon, 06 Feb 2012 18:26:30 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 3473BE072B; Mon, 6 Feb 2012 18:26:23 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id EB0BFE072B for ; Mon, 6 Feb 2012 18:26:22 +0000 (UTC) Received: from pelican.gentoo.org (unknown [66.219.59.40]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 330C51B4063 for ; Mon, 6 Feb 2012 18:26:22 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by pelican.gentoo.org (Postfix) with ESMTP id 64A8E80043 for ; Mon, 6 Feb 2012 18:26:21 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <7916128a6fb3f84c3c63e2c99dbe2e3e4d93d2e8.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/sra_sdk/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/sra_sdk/sra_sdk-2.1.6.ebuild X-VCS-Directories: sci-biology/sra_sdk/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 7916128a6fb3f84c3c63e2c99dbe2e3e4d93d2e8 Date: Mon, 6 Feb 2012 18:26:21 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: f94df07a-8c91-4e9a-98cd-400d52b6f177 X-Archives-Hash: 75d7e5259afa1a12d795d17823714b16 commit: 7916128a6fb3f84c3c63e2c99dbe2e3e4d93d2e8 Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Mon Feb 6 18:26:13 2012 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon Feb 6 18:26:13 2012 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc= ommit;h=3D7916128a sci-biology/sra_sdk-2.1.6: dropping an old crap --- sci-biology/sra_sdk/sra_sdk-2.1.6.ebuild | 73 ------------------------= ------ 1 files changed, 0 insertions(+), 73 deletions(-) diff --git a/sci-biology/sra_sdk/sra_sdk-2.1.6.ebuild b/sci-biology/sra_s= dk/sra_sdk-2.1.6.ebuild deleted file mode 100644 index 4e08fb3..0000000 --- a/sci-biology/sra_sdk/sra_sdk-2.1.6.ebuild +++ /dev/null @@ -1,73 +0,0 @@ -# Copyright 1999-2012 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI=3D3 - -DESCRIPTION=3D"NCBI Sequence Read Archive (SRA) sratoolkit" -HOMEPAGE=3D"http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=3Dshow&= f=3Dfaspftp_runs_v1&m=3Ddownloads&s=3Ddownload_sra" -SRC_URI=3D"http://trace.ncbi.nlm.nih.gov/Traces/sra/static/sra_sdk-"${PV= }".tar.gz" -# http://trace.ncbi.nlm.nih.gov/Traces/sra/static/sratoolkit.2.0.1-cento= s_linux64.tar.gz - -LICENSE=3D"public-domain" -SLOT=3D"0" -#KEYWORDS=3D"" -KEYWORDS=3D"~amd64 ~x86" -IUSE=3D"static" - -DEPEND=3D"app-shells/bash - sys-libs/zlib - app-arch/bzip2 - dev-libs/libxml2" -RDEPEND=3D"${DEPEND}" - -# upstream says: -# icc, icpc are supported: tested with 11.0 (64-bit) and 10.1 (32-bit), = 32-bit 11.0 does not work - -src_compile(){ - # -I/usr/include/libxml2 - # -I/var/tmp/portage/sci-biology/sra_sdk-2.0.1/work/sra_sdk-2.0.1/inter= faces/os/unix - LIBXML_INCLUDES=3D"/usr/include/libxml2" make -j1 OUTDIR=3D"${WORKDIR}"= /objdir out LIBDIR=3D/usr/lib64 DESTDIR=3D"${D}" || die - LIBXML_INCLUDES=3D"/usr/include/libxml2" make -j1 OUTDIR=3D"${WORKDIR}"= /objdir LIBDIR=3D/usr/lib64 DESTDIR=3D"${D}" || die - - # COMP env variable may have 'GCC' or 'ICC' values - if use static; then - emake static LIBDIR=3D/usr/lib64 DESTDIR=3D"${D}" - else - emake dynamic LIBDIR=3D/usr/lib64 DESTDIR=3D"${D}" - fi -} - -src_install(){ - # for details see "${WORKDIR}"/sra_sdk-2.1.6/README-build - - # BUG: at the moment every binary is installed three times, e.g.: - # -rwxr-xr-x 1 root root 1797720 Sep 23 01:31 abi-dump - # -rwxr-xr-x 1 root root 1797720 Sep 23 01:31 abi-dump.2 - # -rwxr-xr-x 1 root root 1797720 Sep 23 01:31 abi-dump.2.1.6 - if use amd64; then - dobin "${WORKDIR}"/objdir/linux/pub/gcc/x86_64/bin/* - insinto /usr/bin/ncbi - dobin "${WORKDIR}"/objdir/linux/pub/gcc/x86_64/bin/ncbi/* - elif use x86; then - dobin "${WORKDIR}"/objdir/linux/pub/gcc/i386/bin/* - insinto /usr/bin/ncbi - dobin "${WORKDIR}"/objdir/linux/pub/gcc/i386/bin/ncbi/* - fi - - # mkdir -p ${D}/usr/bin || die - # for f in ${W}/objdir/linux/rel/gcc/i386/bin/*; do if [ ! -l "$f" ]; t= hen cp "$f" ${D}/usr/bin || die "copy failed" ; fi; done - - # looks the binaries have the folllowing libs statically linked in so w= e do NOT need these files - # mkdir -p ${D}/usr/ilib || die - # dolib ${W}/objdir/linux/rel/gcc/i386/ilib/* - # insinto "${D}"/usr/lib/ncbi - # doins ${W}/objdir/linux/rel/gcc/i386/ilib/ncbi/* - - # mkdir -p ${D}/usr/lib || die - # dolib ${W}/objdir/linux/rel/gcc/i386/lib/* - # insinto "${D}"/usr/lib/ncbi - # doins ${W}/objdir/linux/rel/gcc/i386/lib/ncbi/* - - # same for mod/ and wmod/ subdirs -}