[gentoo-commits] proj/sci:master commit in: sci-biology/sra_sdk/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     7916128a6fb3f84c3c63e2c99dbe2e3e4d93d2e8
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Feb  6 18:26:13 2012 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Feb  6 18:26:13 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7916128a

sci-biology/sra_sdk-2.1.6: dropping an old crap

---
 sci-biology/sra_sdk/sra_sdk-2.1.6.ebuild |   73 ------------------------------
 1 files changed, 0 insertions(+), 73 deletions(-)

diff --git a/sci-biology/sra_sdk/sra_sdk-2.1.6.ebuild b/sci-biology/sra_sdk/sra_sdk-2.1.6.ebuild
deleted file mode 100644
index 4e08fb3..0000000
--- a/sci-biology/sra_sdk/sra_sdk-2.1.6.ebuild
+++ /dev/null
@@ -1,73 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=3
-
-DESCRIPTION="NCBI Sequence Read Archive (SRA) sratoolkit"
-HOMEPAGE="http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=faspftp_runs_v1&m=downloads&s=download_sra"
-SRC_URI="http://trace.ncbi.nlm.nih.gov/Traces/sra/static/sra_sdk-"${PV}".tar.gz"
-# http://trace.ncbi.nlm.nih.gov/Traces/sra/static/sratoolkit.2.0.1-centos_linux64.tar.gz
-
-LICENSE="public-domain"
-SLOT="0"
-#KEYWORDS=""
-KEYWORDS="~amd64 ~x86"
-IUSE="static"
-
-DEPEND="app-shells/bash
-	sys-libs/zlib
-	app-arch/bzip2
-	dev-libs/libxml2"
-RDEPEND="${DEPEND}"
-
-# upstream says:
-# icc, icpc are supported: tested with 11.0 (64-bit) and 10.1 (32-bit), 32-bit 11.0 does not work
-
-src_compile(){
-	# -I/usr/include/libxml2
-	# -I/var/tmp/portage/sci-biology/sra_sdk-2.0.1/work/sra_sdk-2.0.1/interfaces/os/unix
-	LIBXML_INCLUDES="/usr/include/libxml2" make -j1 OUTDIR="${WORKDIR}"/objdir out LIBDIR=/usr/lib64 DESTDIR="${D}" || die
-	LIBXML_INCLUDES="/usr/include/libxml2" make -j1 OUTDIR="${WORKDIR}"/objdir LIBDIR=/usr/lib64 DESTDIR="${D}" || die
-
-	# COMP env variable may have 'GCC' or 'ICC' values
-	if use static; then
-		emake static LIBDIR=/usr/lib64 DESTDIR="${D}"
-	else
-		emake dynamic LIBDIR=/usr/lib64 DESTDIR="${D}"
-	fi
-}
-
-src_install(){
-	# for details see "${WORKDIR}"/sra_sdk-2.1.6/README-build
-
-	# BUG: at the moment every binary is installed three times, e.g.:
-	# -rwxr-xr-x 1 root root 1797720 Sep 23 01:31 abi-dump
-	# -rwxr-xr-x 1 root root 1797720 Sep 23 01:31 abi-dump.2
-	# -rwxr-xr-x 1 root root 1797720 Sep 23 01:31 abi-dump.2.1.6
-	if use amd64; then
-		dobin "${WORKDIR}"/objdir/linux/pub/gcc/x86_64/bin/*
-		insinto /usr/bin/ncbi
-		dobin "${WORKDIR}"/objdir/linux/pub/gcc/x86_64/bin/ncbi/*
-	elif use x86; then
-		dobin "${WORKDIR}"/objdir/linux/pub/gcc/i386/bin/*
-		insinto /usr/bin/ncbi
-		dobin "${WORKDIR}"/objdir/linux/pub/gcc/i386/bin/ncbi/*
-	fi
-
-	# mkdir -p ${D}/usr/bin || die
-	# for f in ${W}/objdir/linux/rel/gcc/i386/bin/*; do if [ ! -l "$f" ]; then cp "$f" ${D}/usr/bin || die "copy failed" ; fi; done
-
-	# looks the binaries have the folllowing libs statically linked in so we do NOT need these files
-	# mkdir -p ${D}/usr/ilib || die
-	# dolib ${W}/objdir/linux/rel/gcc/i386/ilib/*
-	# insinto "${D}"/usr/lib/ncbi
-	# doins ${W}/objdir/linux/rel/gcc/i386/ilib/ncbi/*
-
-	# mkdir -p ${D}/usr/lib || die
-	# dolib ${W}/objdir/linux/rel/gcc/i386/lib/*
-	# insinto "${D}"/usr/lib/ncbi
-	# doins ${W}/objdir/linux/rel/gcc/i386/lib/ncbi/*
-
-	# same for mod/ and wmod/ subdirs
-}