* [gentoo-commits] gentoo-x86 commit in sci-biology/mrbayes: metadata.xml mrbayes-3.1.2-r1.ebuild mrbayes-3.1.2-r2.ebuild ChangeLog
@ 2015-04-17 6:49 Justin Lecher (jlec)
0 siblings, 0 replies; only message in thread
From: Justin Lecher (jlec) @ 2015-04-17 6:49 UTC (permalink / raw
To: gentoo-commits
jlec 15/04/17 06:49:59
Modified: metadata.xml mrbayes-3.1.2-r1.ebuild ChangeLog
Added: mrbayes-3.1.2-r2.ebuild
Log:
Import changes from science overlay
(Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path
1.6 sci-biology/mrbayes/metadata.xml
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mrbayes/metadata.xml?rev=1.6&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mrbayes/metadata.xml?rev=1.6&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mrbayes/metadata.xml?r1=1.5&r2=1.6
Index: metadata.xml
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/mrbayes/metadata.xml,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- metadata.xml 14 Sep 2006 02:16:11 -0000 1.5
+++ metadata.xml 17 Apr 2015 06:49:59 -0000 1.6
@@ -1,8 +1,8 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
-<herd>sci-biology</herd>
-<longdescription>
+ <herd>sci-biology</herd>
+ <longdescription>
MrBayes is a program for the Bayesian estimation of phylogeny.
Bayesian inference of phylogeny is based upon a quantity called the
posterior probability distribution of trees, which is the probability of a
1.6 sci-biology/mrbayes/mrbayes-3.1.2-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mrbayes/mrbayes-3.1.2-r1.ebuild?rev=1.6&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mrbayes/mrbayes-3.1.2-r1.ebuild?rev=1.6&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mrbayes/mrbayes-3.1.2-r1.ebuild?r1=1.5&r2=1.6
Index: mrbayes-3.1.2-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/mrbayes/mrbayes-3.1.2-r1.ebuild,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- mrbayes-3.1.2-r1.ebuild 21 Dec 2011 08:59:32 -0000 1.5
+++ mrbayes-3.1.2-r1.ebuild 17 Apr 2015 06:49:59 -0000 1.6
@@ -1,6 +1,6 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mrbayes/mrbayes-3.1.2-r1.ebuild,v 1.5 2011/12/21 08:59:32 phajdan.jr Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mrbayes/mrbayes-3.1.2-r1.ebuild,v 1.6 2015/04/17 06:49:59 jlec Exp $
EAPI=4
@@ -18,7 +18,7 @@
DEPEND="
sys-libs/ncurses
mpi? ( virtual/mpi )
- readline? ( sys-libs/readline )"
+ readline? ( sys-libs/readline:0 )"
RDEPEND="${DEPEND}"
src_prepare() {
1.27 sci-biology/mrbayes/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mrbayes/ChangeLog?rev=1.27&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mrbayes/ChangeLog?rev=1.27&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mrbayes/ChangeLog?r1=1.26&r2=1.27
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/mrbayes/ChangeLog,v
retrieving revision 1.26
retrieving revision 1.27
diff -u -r1.26 -r1.27
--- ChangeLog 21 Dec 2011 09:05:28 -0000 1.26
+++ ChangeLog 17 Apr 2015 06:49:59 -0000 1.27
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/mrbayes
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mrbayes/ChangeLog,v 1.26 2011/12/21 09:05:28 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mrbayes/ChangeLog,v 1.27 2015/04/17 06:49:59 jlec Exp $
+
+*mrbayes-3.1.2-r2 (17 Apr 2015)
+
+ 17 Apr 2015; Justin Lecher <jlec@gentoo.org> +mrbayes-3.1.2-r2.ebuild,
+ metadata.xml, mrbayes-3.1.2-r1.ebuild:
+ Import changes from science overlay
21 Dec 2011; Justin Lecher <jlec@gentoo.org> -mrbayes-3.1.2.ebuild:
Cleaned old
@@ -96,4 +102,3 @@
19 Jan 2005; Lina Pezzella <j4rg0n@gentoo.org> :
Initial commit
-
1.1 sci-biology/mrbayes/mrbayes-3.1.2-r2.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mrbayes/mrbayes-3.1.2-r2.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mrbayes/mrbayes-3.1.2-r2.ebuild?rev=1.1&content-type=text/plain
Index: mrbayes-3.1.2-r2.ebuild
===================================================================
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/mrbayes/mrbayes-3.1.2-r2.ebuild,v 1.1 2015/04/17 06:49:59 jlec Exp $
EAPI=5
inherit eutils toolchain-funcs
DESCRIPTION="Bayesian Inference of Phylogeny"
HOMEPAGE="http://mrbayes.csit.fsu.edu/"
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
SLOT="0"
LICENSE="GPL-2"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
IUSE="debug mpi readline"
DEPEND="
sys-libs/ncurses
mpi? ( virtual/mpi )
readline? ( sys-libs/readline:0= )"
RDEPEND="${DEPEND}"
src_prepare() {
if use mpi; then
sed -e "s:MPI ?= no:MPI=yes:" -i Makefile || die "Patching MPI support."
fi
if ! use readline; then
sed -e "s:USEREADLINE ?= yes:USEREADLINE=no:" \
-i Makefile || die "Patching readline support."
else
# Only needed for OSX with an old (4.x) version of
# libreadline, but it doesn't hurt for other distributions.
epatch "${FILESDIR}"/mb_readline_312.patch
fi
sed -e 's:-ggdb::g' -i Makefile || die
}
src_compile() {
local myconf mycc
if use mpi; then
mycc=mpicc
else
mycc=$(tc-getCC)
fi
use mpi && myconf="MPI=yes"
use readline || myconf="${myconf} USEREADLINE=no"
use debug && myconf="${myconf} DEBUG=yes"
emake \
OPTFLAGS="${CFLAGS}" \
LDFLAGS="${LDFLAGS}" \
CC=${mycc} \
${myconf}
}
src_install() {
dobin mb
insinto /usr/share/${PN}
doins *.nex
}
^ permalink raw reply [flat|nested] only message in thread
only message in thread, other threads:[~2015-04-17 6:50 UTC | newest]
Thread overview: (only message) (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2015-04-17 6:49 [gentoo-commits] gentoo-x86 commit in sci-biology/mrbayes: metadata.xml mrbayes-3.1.2-r1.ebuild mrbayes-3.1.2-r2.ebuild ChangeLog Justin Lecher (jlec)
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox