[gentoo-commits] gentoo-x86 commit in dev-perl/Bio-SamTools: ChangeLog Bio-SamTools-1.370.0.ebuild

[gentoo-commits] gentoo-x86 commit in dev-perl/Bio-SamTools: ChangeLog Bio-SamTools-1.370.0.ebuild

[Justin Lecher (jlec)]

jlec        13/01/23 10:53:12

  Modified:             ChangeLog
  Added:                Bio-SamTools-1.370.0.ebuild
  Log:
  dev-perl/Bio-SamTools: Version BUmp, #452364
  
  (Portage version: 2.2.0_alpha159/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)

Revision  Changes    Path
1.9                  dev-perl/Bio-SamTools/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.9&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.9&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?r1=1.8&r2=1.9

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -r1.8 -r1.9
--- ChangeLog	24 Jun 2012 13:00:15 -0000	1.8
+++ ChangeLog	23 Jan 2013 10:53:12 -0000	1.9
@@ -1,6 +1,11 @@
 # ChangeLog for dev-perl/Bio-SamTools
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.8 2012/06/24 13:00:15 tove Exp $
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.9 2013/01/23 10:53:12 jlec Exp $
+
+*Bio-SamTools-1.370.0 (23 Jan 2013)
+
+  23 Jan 2013; Justin Lecher <jlec@gentoo.org> +Bio-SamTools-1.370.0.ebuild:
+  Version BUmp, #452364
 
   24 Jun 2012; Torsten Veller <tove@gentoo.org> metadata.xml:
   Update CPAN upstream info



1.1                  dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild?rev=1.1&content-type=text/plain

Index: Bio-SamTools-1.370.0.ebuild
===================================================================
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild,v 1.1 2013/01/23 10:53:12 jlec Exp $

EAPI=4

MODULE_AUTHOR=LDS
MODULE_VERSION=1.33
inherit perl-module

DESCRIPTION="Read SAM/BAM database files"

SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""

RDEPEND="sci-biology/bioperl
	>=sci-biology/samtools-0.1.16"
DEPEND="${RDEPEND}
	virtual/perl-ExtUtils-CBuilder
	virtual/perl-Module-Build
"

SRC_TEST=do

src_prepare() {
	sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \
		-e 's|my $LibFile    = "libbam.a";|my $LibFile    = "libbam.so";|' Build.PL || die
	sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \
		-e 's|#include "khash.h"|#include "bam/khash.h"|' \
		-e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die
	perl-module_src_prepare
}