* [gentoo-commits] gentoo-x86 commit in sci-biology/qrna: qrna-2.0.3c-r1.ebuild ChangeLog
@ 2010-03-10 21:13 Justin Lecher (jlec)
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher (jlec) @ 2010-03-10 21:13 UTC (permalink / raw
To: gentoo-commits
jlec 10/03/10 21:13:07
Modified: ChangeLog
Added: qrna-2.0.3c-r1.ebuild
Log:
Respecting LDFLAGS, rebuilding all libs instead of using upstreams bundled ones, bug 308703
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Revision Changes Path
1.21 sci-biology/qrna/ChangeLog
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.21&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.21&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/ChangeLog?r1=1.20&r2=1.21
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v
retrieving revision 1.20
retrieving revision 1.21
diff -u -r1.20 -r1.21
--- ChangeLog 5 Aug 2009 19:32:12 -0000 1.20
+++ ChangeLog 10 Mar 2010 21:13:06 -0000 1.21
@@ -1,6 +1,13 @@
# ChangeLog for sci-biology/qrna
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.20 2009/08/05 19:32:12 ssuominen Exp $
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.21 2010/03/10 21:13:06 jlec Exp $
+
+*qrna-2.0.3c-r1 (10 Mar 2010)
+
+ 10 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org>
+ +qrna-2.0.3c-r1.ebuild, +files/qrna-2.0.3c-ldflags.patch:
+ Respecting LDFLAGS, rebuilding all libs instead of using upstreams bundled
+ ones, #308703
05 Aug 2009; Samuli Suominen <ssuominen@gentoo.org> qrna-2.0.3c.ebuild,
+files/qrna-2.0.3c-glibc-2.10.patch:
1.1 sci-biology/qrna/qrna-2.0.3c-r1.ebuild
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.1&content-type=text/plain
Index: qrna-2.0.3c-r1.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.1 2010/03/10 21:13:06 jlec Exp $
inherit eutils toolchain-funcs
DESCRIPTION="Prototype ncRNA genefinder"
HOMEPAGE="http://selab.janelia.org/software.html"
SRC_URI="mirror://gentoo/${P}.tar.bz2"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86"
IUSE=""
RDEPEND="dev-lang/perl
sci-biology/hmmer"
DEPEND="${RDEPEND}"
src_unpack() {
unpack ${A}
cd "${S}"
epatch "${FILESDIR}"/${P}-glibc-2.10.patch
epatch "${FILESDIR}"/${P}-ldflags.patch
sed -e "s/^CC.*/CC = $(tc-getCC)/" \
-e "s/CFLAGS = -O/CFLAGS = ${CFLAGS}/" \
-i src/Makefile squid/Makefile squid02/Makefile || die
rm -v squid*/*.a
}
src_compile() {
cd "${S}"/squid
emake || die
cd "${S}"/squid02
emake || die
cd "${S}"/src
emake || die
}
src_install () {
cd "${S}"/src
dobin cfgbuild eqrna eqrna_sample main rnamat_main || die
cd "${S}"
dobin scripts/* || die
newdoc 00README README || die
insinto /usr/share/doc/${PF}
doins documentation/* || die
insinto /usr/share/${PN}/data
doins lib/* || die
insinto /usr/share/${PN}/demos
doins Demos/* || die
# Sets the path to the QRNA data files.
doenvd "${FILESDIR}"/26qrna || die
}
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/qrna: qrna-2.0.3c-r1.ebuild ChangeLog
@ 2012-11-09 14:14 Justin Lecher (jlec)
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher (jlec) @ 2012-11-09 14:14 UTC (permalink / raw
To: gentoo-commits
jlec 12/11/09 14:14:50
Modified: qrna-2.0.3c-r1.ebuild ChangeLog
Log:
sci-biology/qrna: Move to EAPI=4
(Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Revision Changes Path
1.2 sci-biology/qrna/qrna-2.0.3c-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?r1=1.1&r2=1.2
Index: qrna-2.0.3c-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- qrna-2.0.3c-r1.ebuild 10 Mar 2010 21:13:06 -0000 1.1
+++ qrna-2.0.3c-r1.ebuild 9 Nov 2012 14:14:49 -0000 1.2
@@ -1,6 +1,8 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.1 2010/03/10 21:13:06 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.2 2012/11/09 14:14:49 jlec Exp $
+
+EAPI=4
inherit eutils toolchain-funcs
@@ -13,48 +15,43 @@
KEYWORDS="~amd64 ~ppc ~x86"
IUSE=""
-RDEPEND="dev-lang/perl
+RDEPEND="
+ dev-lang/perl
sci-biology/hmmer"
DEPEND="${RDEPEND}"
-src_unpack() {
- unpack ${A}
- cd "${S}"
- epatch "${FILESDIR}"/${P}-glibc-2.10.patch
- epatch "${FILESDIR}"/${P}-ldflags.patch
- sed -e "s/^CC.*/CC = $(tc-getCC)/" \
- -e "s/CFLAGS = -O/CFLAGS = ${CFLAGS}/" \
- -i src/Makefile squid/Makefile squid02/Makefile || die
+src_prepare() {
+ epatch \
+ "${FILESDIR}"/${P}-glibc-2.10.patch \
+ "${FILESDIR}"/${P}-ldflags.patch
+ sed \
+ -e "s:^CC.*:CC = $(tc-getCC):" \
+ -e "/^AR/s:ar:$(tc-getAR):g" \
+ -e "/^RANLIB/s:ranlib:$(tc-getRANLIB):g" \
+ -e "/CFLAGS/s:=.*$:= ${CFLAGS}:" \
+ -i {src,squid,squid02}/Makefile || die
rm -v squid*/*.a
}
src_compile() {
- cd "${S}"/squid
- emake || die
-
- cd "${S}"/squid02
- emake || die
-
- cd "${S}"/src
- emake || die
+ local dir
+ for dir in squid squid02 src; do
+ emake -C ${dir}
+ done
}
src_install () {
- cd "${S}"/src
- dobin cfgbuild eqrna eqrna_sample main rnamat_main || die
-
- cd "${S}"
- dobin scripts/* || die
+ dobin src/{cfgbuild,eqrna,eqrna_sample,rnamat_main} scripts/*
- newdoc 00README README || die
+ newdoc 00README README
insinto /usr/share/doc/${PF}
- doins documentation/* || die
+ doins documentation/*
insinto /usr/share/${PN}/data
- doins lib/* || die
+ doins lib/*
insinto /usr/share/${PN}/demos
- doins Demos/* || die
+ doins Demos/*
# Sets the path to the QRNA data files.
- doenvd "${FILESDIR}"/26qrna || die
+ doenvd "${FILESDIR}"/26qrna
}
1.22 sci-biology/qrna/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.22&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.22&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?r1=1.21&r2=1.22
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v
retrieving revision 1.21
retrieving revision 1.22
diff -u -r1.21 -r1.22
--- ChangeLog 10 Mar 2010 21:13:06 -0000 1.21
+++ ChangeLog 9 Nov 2012 14:14:49 -0000 1.22
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/qrna
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.21 2010/03/10 21:13:06 jlec Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.22 2012/11/09 14:14:49 jlec Exp $
+
+ 09 Nov 2012; Justin Lecher <jlec@gentoo.org> qrna-2.0.3c-r1.ebuild:
+ Move to EAPI=4
*qrna-2.0.3c-r1 (10 Mar 2010)
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/qrna: qrna-2.0.3c-r1.ebuild ChangeLog
@ 2012-11-10 12:06 Agostino Sarubbo (ago)
0 siblings, 0 replies; 4+ messages in thread
From: Agostino Sarubbo (ago) @ 2012-11-10 12:06 UTC (permalink / raw
To: gentoo-commits
ago 12/11/10 12:06:37
Modified: qrna-2.0.3c-r1.ebuild ChangeLog
Log:
Stable for amd64, wrt bug #441020
(Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
Revision Changes Path
1.3 sci-biology/qrna/qrna-2.0.3c-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?r1=1.2&r2=1.3
Index: qrna-2.0.3c-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- qrna-2.0.3c-r1.ebuild 9 Nov 2012 14:14:49 -0000 1.2
+++ qrna-2.0.3c-r1.ebuild 10 Nov 2012 12:06:37 -0000 1.3
@@ -1,6 +1,6 @@
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.2 2012/11/09 14:14:49 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.3 2012/11/10 12:06:37 ago Exp $
EAPI=4
@@ -12,7 +12,7 @@
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86"
+KEYWORDS="amd64 ~ppc ~x86"
IUSE=""
RDEPEND="
1.23 sci-biology/qrna/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.23&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.23&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?r1=1.22&r2=1.23
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v
retrieving revision 1.22
retrieving revision 1.23
diff -u -r1.22 -r1.23
--- ChangeLog 9 Nov 2012 14:14:49 -0000 1.22
+++ ChangeLog 10 Nov 2012 12:06:37 -0000 1.23
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/qrna
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.22 2012/11/09 14:14:49 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.23 2012/11/10 12:06:37 ago Exp $
+
+ 10 Nov 2012; <ago@gentoo.org> qrna-2.0.3c-r1.ebuild:
+ Stable for amd64, wrt bug #441020
09 Nov 2012; Justin Lecher <jlec@gentoo.org> qrna-2.0.3c-r1.ebuild:
Move to EAPI=4
^ permalink raw reply [flat|nested] 4+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-biology/qrna: qrna-2.0.3c-r1.ebuild ChangeLog
@ 2012-12-06 4:15 PaweA Hajdan (phajdan.jr)
0 siblings, 0 replies; 4+ messages in thread
From: PaweA Hajdan (phajdan.jr) @ 2012-12-06 4:15 UTC (permalink / raw
To: gentoo-commits
phajdan.jr 12/12/06 04:15:42
Modified: qrna-2.0.3c-r1.ebuild ChangeLog
Log:
x86 stable wrt bug #441020
(Portage version: 2.1.11.31/cvs/Linux i686, signed Manifest commit with key 30427902)
Revision Changes Path
1.4 sci-biology/qrna/qrna-2.0.3c-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild?r1=1.3&r2=1.4
Index: qrna-2.0.3c-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- qrna-2.0.3c-r1.ebuild 10 Nov 2012 12:06:37 -0000 1.3
+++ qrna-2.0.3c-r1.ebuild 6 Dec 2012 04:15:42 -0000 1.4
@@ -1,6 +1,6 @@
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.3 2012/11/10 12:06:37 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c-r1.ebuild,v 1.4 2012/12/06 04:15:42 phajdan.jr Exp $
EAPI=4
@@ -12,7 +12,7 @@
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="amd64 ~ppc ~x86"
+KEYWORDS="amd64 ~ppc x86"
IUSE=""
RDEPEND="
1.24 sci-biology/qrna/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.24&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?rev=1.24&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/qrna/ChangeLog?r1=1.23&r2=1.24
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v
retrieving revision 1.23
retrieving revision 1.24
diff -u -r1.23 -r1.24
--- ChangeLog 10 Nov 2012 12:06:37 -0000 1.23
+++ ChangeLog 6 Dec 2012 04:15:42 -0000 1.24
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/qrna
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.23 2012/11/10 12:06:37 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.24 2012/12/06 04:15:42 phajdan.jr Exp $
+
+ 06 Dec 2012; Pawel Hajdan jr <phajdan.jr@gentoo.org> qrna-2.0.3c-r1.ebuild:
+ x86 stable wrt bug #441020
10 Nov 2012; <ago@gentoo.org> qrna-2.0.3c-r1.ebuild:
Stable for amd64, wrt bug #441020
^ permalink raw reply [flat|nested] 4+ messages in thread
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2012-12-06 4:15 [gentoo-commits] gentoo-x86 commit in sci-biology/qrna: qrna-2.0.3c-r1.ebuild ChangeLog PaweA Hajdan (phajdan.jr)
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2012-11-10 12:06 Agostino Sarubbo (ago)
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2010-03-10 21:13 Justin Lecher (jlec)
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