* [gentoo-commits] gentoo-x86 commit in sci-chemistry/gromacs: ChangeLog gromacs-4.5.5-r1.ebuild
@ 2011-12-19 20:56 Christoph Junghans (ottxor)
0 siblings, 0 replies; 5+ messages in thread
From: Christoph Junghans (ottxor) @ 2011-12-19 20:56 UTC (permalink / raw
To: gentoo-commits
ottxor 11/12/19 20:56:27
Modified: ChangeLog
Added: gromacs-4.5.5-r1.ebuild
Log:
bring back sse2 kernels
(Portage version: 2.2.0_alpha81/cvs/Linux i686)
Revision Changes Path
1.99 sci-chemistry/gromacs/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.99&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.99&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?r1=1.98&r2=1.99
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v
retrieving revision 1.98
retrieving revision 1.99
diff -u -r1.98 -r1.99
--- ChangeLog 14 Dec 2011 16:45:32 -0000 1.98
+++ ChangeLog 19 Dec 2011 20:56:27 -0000 1.99
@@ -1,6 +1,13 @@
# ChangeLog for sci-chemistry/gromacs
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.98 2011/12/14 16:45:32 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.99 2011/12/19 20:56:27 ottxor Exp $
+
+*gromacs-4.5.5-r1 (19 Dec 2011)
+
+ 19 Dec 2011; Christoph Junghans <ottxor@gentoo.org> +gromacs-4.5.5-r1.ebuild,
+ +files/gromacs-4.5.5-cmake-cpp-asm.patch,
+ +files/gromacs-4.5.5-enable-see.patch:
+ bring back sse2 kernels
14 Dec 2011; Agostino Sarubbo <ago@gentoo.org> gromacs-4.5.5.ebuild:
Stable for AMD64, wrt bug #391147
1.1 sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?rev=1.1&content-type=text/plain
Index: gromacs-4.5.5-r1.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild,v 1.1 2011/12/19 20:56:27 ottxor Exp $
EAPI="4"
TEST_PV="4.0.4"
MANUAL_PV="4.5.4"
#to find external blas/lapack
CMAKE_MIN_VERSION="2.8.5-r2"
inherit bash-completion-r1 cmake-utils eutils fortran-2 multilib toolchain-funcs
if [ "${PV%9999}" != "${PV}" ]; then
EGIT_REPO_URI="git://git.gromacs.org/gromacs"
EGIT_BRANCH="release-4-5-patches"
inherit git-2
else
SRC_URI="${SRC_URI} ftp://ftp.gromacs.org/pub/${PN}/${P}.tar.gz"
fi
DESCRIPTION="The ultimate molecular dynamics simulation package"
HOMEPAGE="http://www.gromacs.org/"
SRC_URI="${SRC_URI}
sse2? ( http://dev.gentoo.org/~alexxy/gromacs/0001-Make-stack-non-executable-for-GAS-assembly.patch.gz )
sse2? ( http://dev.gentoo.org/~alexxy/gromacs/0002-Make-stack-non-executable-for-ATT-assembly.patch.gz )
doc? ( ftp://ftp.gromacs.org/pub/manual/manual-${MANUAL_PV}.pdf -> gromacs-manual-${MANUAL_PV}.pdf )
test? ( ftp://ftp.gromacs.org/pub/tests/gmxtest-${TEST_PV}.tgz )"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux"
IUSE="X altivec blas doc -double-precision +fftw fkernels gsl lapack
mpi +single-precision sse2 test +threads xml zsh-completion"
REQUIRED_USE="fkernels? ( !threads )"
CDEPEND="
X? (
x11-libs/libX11
x11-libs/libSM
x11-libs/libICE
)
blas? ( virtual/blas )
fftw? ( sci-libs/fftw:3.0 )
fkernels? ( virtual/fortran )
gsl? ( sci-libs/gsl )
lapack? ( virtual/lapack )
mpi? ( virtual/mpi )
xml? ( dev-libs/libxml2:2 )"
DEPEND="${CDEPEND}
dev-util/pkgconfig"
RDEPEND="${CDEPEND}
app-shells/tcsh"
RESTRICT="test"
pkg_setup() {
use fkernels && fortran-2_pkg_setup
}
src_prepare() {
#add user patches from /etc/portage/patches/sci-chemistry/gromacs
epatch_user
if use mpi && use threads; then
elog "mdrun uses only threads OR mpi, and gromacs favours the"
elog "use of mpi over threads, so a mpi-version of mdrun will"
elog "be compiled. If you want to run mdrun on shared memory"
elog "machines only, you can safely disable mpi"
fi
if use sse2; then
# Add patches for non-exec stack - qa issue
epatch "${WORKDIR}/0001-Make-stack-non-executable-for-GAS-assembly.patch"
epatch "${WORKDIR}/0002-Make-stack-non-executable-for-ATT-assembly.patch"
#alexxy patches, renamve kernel from .s to .S
epatch "${FILESDIR}/${P}-cmake-cpp-asm.patch"
epatch "${FILESDIR}/${P}-enable-see.patch"
fi
GMX_DIRS=""
use single-precision && GMX_DIRS+=" float"
use double-precision && GMX_DIRS+=" double"
#if neither single-precision nor double-precision is enabled
#build at least default (single)
[ -z "$GMX_DIRS" ] && GMX_DIRS+=" float"
for x in ${GMX_DIRS}; do
mkdir -p "${WORKDIR}/${P}_${x}" || die
use test && cp -r "${WORKDIR}"/gmxtest "${WORKDIR}/${P}_${x}"
done
}
src_configure() {
local mycmakeargs_pre=( )
#from gromacs configure
if use fftw; then
mycmakeargs_pre+=("-DGMX_FFT_LIBRARY=fftw3")
else
mycmakeargs_pre+=("-DGMX_FFT_LIBRARY=fftpack")
ewarn "WARNING: The built-in FFTPACK routines are slow."
ewarn "Are you sure you don\'t want to use FFTW?"
ewarn "It is free and much faster..."
fi
if [[ $(gcc-version) == "4.1" ]]; then
eerror "gcc 4.1 is not supported by gromacs"
eerror "please run test suite"
die
fi
#note for gentoo-PREFIX on apple: use --enable-apple-64bit
#note for gentoo-PREFIX on aix, fortran (xlf) is still much faster
if use fkernels; then
ewarn "Fortran kernels are usually not faster than C kernels and assembly"
ewarn "I hope, you know what are you doing..."
fi
if use double-precision ; then
#from gromacs manual
elog
elog "For most simulations single precision is accurate enough. In some"
elog "cases double precision is required to get reasonable results:"
elog
elog "-normal mode analysis, for the conjugate gradient or l-bfgs minimization"
elog " and the calculation and diagonalization of the Hessian "
elog "-calculation of the constraint force between two large groups of atoms"
elog "-energy conservation: this can only be done without temperature coupling and"
elog " without cutoffs"
elog
fi
if use mpi ; then
elog "You have enabled mpi, only mdrun will make use of mpi, that is why"
elog "we configure/compile gromacs twice (with and without mpi) and only"
elog "install mdrun with mpi support. In addtion you will get libgmx and"
elog "libmd with and without mpi support."
fi
#go from slowest to fasterest acceleration
local acce="none"
use fkernels && acce="fortran"
use altivec && acce="altivec"
use ia64 && acce="ia64"
use sse2 && acce="sse"
mycmakeargs_pre+=(
$(cmake-utils_use X GMX_X11)
$(cmake-utils_use blas GMX_EXTERNAL_BLAS)
$(cmake-utils_use gsl GMX_GSL)
$(cmake-utils_use lapack GMX_EXTERNAL_LAPACK)
$(cmake-utils_use threads GMX_THREADS)
$(cmake-utils_use xml GMX_XML)
-DGMX_DEFAULT_SUFFIX=off
-DGMX_ACCELERATION="$acce"
-DGMXLIB="$(get_libdir)"
)
for x in ${GMX_DIRS}; do
einfo "Configuring for ${x} precision"
local suffix=""
#if we build single and double - double is suffixed
use double-precision && use single-precision && \
[ "${x}" = "double" ] && suffix="_d"
local p
[ "${x}" = "double" ] && p="-DGMX_DOUBLE=ON" || p="-DGMX_DOUBLE=OFF"
mycmakeargs=( ${mycmakeargs_pre[@]} ${p} -DGMX_MPI=OFF
-DGMX_BINARY_SUFFIX="${suffix}" -DGMX_LIBS_SUFFIX="${suffix}" )
CMAKE_BUILD_DIR="${WORKDIR}/${P}_${x}" cmake-utils_src_configure
use mpi || continue
einfo "Configuring for ${x} precision with mpi"
mycmakeargs=( ${mycmakeargs_pre[@]} ${p} -DGMX_MPI=ON
-DGMX_BINARY_SUFFIX="_mpi${suffix}" -DGMX_LIBS_SUFFIX="_mpi${suffix}" )
CMAKE_BUILD_DIR="${WORKDIR}/${P}_${x}_mpi" cmake-utils_src_configure
done
}
src_compile() {
for x in ${GMX_DIRS}; do
einfo "Compiling for ${x} precision"
CMAKE_BUILD_DIR="${WORKDIR}/${P}_${x}"\
cmake-utils_src_compile
use mpi || continue
einfo "Compiling for ${x} precision with mpi"
CMAKE_BUILD_DIR="${WORKDIR}/${P}_${x}_mpi"\
cmake-utils_src_compile mdrun
done
}
src_test() {
for x in ${GMX_DIRS}; do
local oldpath="${PATH}"
export PATH="${WORKDIR}/${P}_${x}/src/kernel:${S}-{x}/src/tools:${PATH}"
cd "${WORKDIR}/${P}_${x}"
emake -j1 tests || die "${x} Precision test failed"
export PATH="${oldpath}"
done
}
src_install() {
for x in ${GMX_DIRS}; do
CMAKE_BUILD_DIR="${WORKDIR}/${P}_${x}" \
cmake-utils_src_install
use mpi || continue
#cmake-utils_src_install does not support args
#using cmake-utils_src_compile instead
CMAKE_BUILD_DIR="${WORKDIR}/${P}_${x}_mpi" \
cmake-utils_src_make install-mdrun DESTDIR="${D}"
done
sed -n -e '/^GMXBIN/,/^GMXDATA/p' "${ED}"/usr/bin/GMXRC.bash > "${T}/80gromacs"
echo "VMD_PLUGIN_PATH=${EPREFIX}/usr/$(get_libdir)/vmd/plugins/*/molfile/" >> "${T}/80gromacs"
doenvd "${T}/80gromacs"
rm -f "${ED}"/usr/bin/GMXRC*
newbashcomp "${ED}"/usr/bin/completion.bash ${PN}
if use zsh-completion ; then
insinto /usr/share/zsh/site-functions
newins "${ED}"/usr/bin/completion.zsh _${PN}
fi
rm -f "${ED}"/usr/bin/completion.*
# Fix typos in a couple of files.
sed -e "s:+0f:-f:" -i "${ED}"usr/share/gromacs/tutor/gmxdemo/demo \
|| die "Failed to fixup demo script."
cd "${S}"
dodoc AUTHORS INSTALL* README*
if use doc; then
newdoc "${DISTDIR}/gromacs-manual-${MANUAL_PV}.pdf" "manual-${MANUAL_PV}.pdf"
dohtml -r "${ED}usr/share/gromacs/html/"
fi
rm -rf "${ED}usr/share/gromacs/html/"
}
pkg_postinst() {
env-update && source /etc/profile
einfo
einfo "Please read and cite:"
einfo "Gromacs 4, J. Chem. Theory Comput. 4, 435 (2008). "
einfo "http://dx.doi.org/10.1021/ct700301q"
einfo
einfo $(g_luck)
einfo "For more Gromacs cool quotes (gcq) add g_luck to your .bashrc"
einfo
elog "Gromacs can use sci-chemistry/vmd to read additional file formats"
}
^ permalink raw reply [flat|nested] 5+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/gromacs: ChangeLog gromacs-4.5.5-r1.ebuild
@ 2011-12-26 12:26 Markus Meier (maekke)
0 siblings, 0 replies; 5+ messages in thread
From: Markus Meier (maekke) @ 2011-12-26 12:26 UTC (permalink / raw
To: gentoo-commits
maekke 11/12/26 12:26:52
Modified: ChangeLog gromacs-4.5.5-r1.ebuild
Log:
x86 stable, bug #391147
(Portage version: 2.1.10.41/cvs/Linux x86_64)
Revision Changes Path
1.101 sci-chemistry/gromacs/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.101&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.101&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?r1=1.100&r2=1.101
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v
retrieving revision 1.100
retrieving revision 1.101
diff -u -r1.100 -r1.101
--- ChangeLog 20 Dec 2011 11:51:32 -0000 1.100
+++ ChangeLog 26 Dec 2011 12:26:51 -0000 1.101
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/gromacs
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.100 2011/12/20 11:51:32 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.101 2011/12/26 12:26:51 maekke Exp $
+
+ 26 Dec 2011; Markus Meier <maekke@gentoo.org> gromacs-4.5.5-r1.ebuild:
+ x86 stable, bug #391147
20 Dec 2011; Agostino Sarubbo <ago@gentoo.org> gromacs-4.5.5-r1.ebuild:
Stable for AMD64, wrt bug #391147
1.3 sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?r1=1.2&r2=1.3
Index: gromacs-4.5.5-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- gromacs-4.5.5-r1.ebuild 20 Dec 2011 11:51:32 -0000 1.2
+++ gromacs-4.5.5-r1.ebuild 26 Dec 2011 12:26:51 -0000 1.3
@@ -1,6 +1,6 @@
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild,v 1.2 2011/12/20 11:51:32 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild,v 1.3 2011/12/26 12:26:51 maekke Exp $
EAPI="4"
@@ -30,7 +30,7 @@
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="~alpha amd64 ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~alpha amd64 ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux"
IUSE="X altivec blas doc -double-precision +fftw fkernels gsl lapack
mpi +single-precision sse2 test +threads xml zsh-completion"
REQUIRED_USE="fkernels? ( !threads )"
^ permalink raw reply [flat|nested] 5+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/gromacs: ChangeLog gromacs-4.5.5-r1.ebuild
@ 2012-01-06 2:16 Christoph Junghans (ottxor)
0 siblings, 0 replies; 5+ messages in thread
From: Christoph Junghans (ottxor) @ 2012-01-06 2:16 UTC (permalink / raw
To: gentoo-commits
ottxor 12/01/06 02:16:45
Modified: ChangeLog gromacs-4.5.5-r1.ebuild
Log:
keyword ~x86-macos
(Portage version: 2.2.0_alpha84/cvs/Linux i686)
Revision Changes Path
1.102 sci-chemistry/gromacs/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.102&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.102&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?r1=1.101&r2=1.102
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v
retrieving revision 1.101
retrieving revision 1.102
diff -u -r1.101 -r1.102
--- ChangeLog 26 Dec 2011 12:26:51 -0000 1.101
+++ ChangeLog 6 Jan 2012 02:16:45 -0000 1.102
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/gromacs
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.101 2011/12/26 12:26:51 maekke Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.102 2012/01/06 02:16:45 ottxor Exp $
+
+ 06 Jan 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.5-r1.ebuild:
+ keyword ~x86-macos
26 Dec 2011; Markus Meier <maekke@gentoo.org> gromacs-4.5.5-r1.ebuild:
x86 stable, bug #391147
1.4 sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?rev=1.4&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?rev=1.4&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?r1=1.3&r2=1.4
Index: gromacs-4.5.5-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- gromacs-4.5.5-r1.ebuild 26 Dec 2011 12:26:51 -0000 1.3
+++ gromacs-4.5.5-r1.ebuild 6 Jan 2012 02:16:45 -0000 1.4
@@ -1,6 +1,6 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild,v 1.3 2011/12/26 12:26:51 maekke Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild,v 1.4 2012/01/06 02:16:45 ottxor Exp $
EAPI="4"
@@ -30,7 +30,7 @@
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="~alpha amd64 ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~alpha amd64 ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux ~x86-macos"
IUSE="X altivec blas doc -double-precision +fftw fkernels gsl lapack
mpi +single-precision sse2 test +threads xml zsh-completion"
REQUIRED_USE="fkernels? ( !threads )"
^ permalink raw reply [flat|nested] 5+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/gromacs: ChangeLog gromacs-4.5.5-r1.ebuild
@ 2012-03-08 23:04 Brent Baude (ranger)
0 siblings, 0 replies; 5+ messages in thread
From: Brent Baude (ranger) @ 2012-03-08 23:04 UTC (permalink / raw
To: gentoo-commits
ranger 12/03/08 23:04:42
Modified: ChangeLog gromacs-4.5.5-r1.ebuild
Log:
Marking gromacs-4.5.5-r1 ppc64 for bug 391147
(Portage version: 2.1.10.11/cvs/Linux ppc64)
Revision Changes Path
1.106 sci-chemistry/gromacs/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.106&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.106&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?r1=1.105&r2=1.106
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v
retrieving revision 1.105
retrieving revision 1.106
diff -u -r1.105 -r1.106
--- ChangeLog 6 Feb 2012 03:43:24 -0000 1.105
+++ ChangeLog 8 Mar 2012 23:04:42 -0000 1.106
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/gromacs
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.105 2012/02/06 03:43:24 ottxor Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.106 2012/03/08 23:04:42 ranger Exp $
+
+ 08 Mar 2012; Brent Baude <ranger@gentoo.org> gromacs-4.5.5-r1.ebuild:
+ Marking gromacs-4.5.5-r1 ppc64 for bug 391147
06 Feb 2012; Christoph Junghans <ottxor@gentoo.org> gromacs-4.5.4-r1.ebuild,
gromacs-4.5.5-r1.ebuild:
1.7 sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?rev=1.7&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?rev=1.7&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?r1=1.6&r2=1.7
Index: gromacs-4.5.5-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- gromacs-4.5.5-r1.ebuild 6 Feb 2012 03:43:24 -0000 1.6
+++ gromacs-4.5.5-r1.ebuild 8 Mar 2012 23:04:42 -0000 1.7
@@ -1,6 +1,6 @@
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild,v 1.6 2012/02/06 03:43:24 ottxor Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild,v 1.7 2012/03/08 23:04:42 ranger Exp $
EAPI="4"
@@ -30,7 +30,7 @@
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="amd64 ~ppc64 x86 ~amd64-linux ~x86-linux ~x86-macos"
+KEYWORDS="amd64 ppc64 x86 ~amd64-linux ~x86-linux ~x86-macos"
IUSE="X altivec blas doc -double-precision +fftw fkernels gsl lapack
mpi +single-precision sse2 test +threads xml zsh-completion"
REQUIRED_USE="fkernels? ( !threads )"
^ permalink raw reply [flat|nested] 5+ messages in thread
* [gentoo-commits] gentoo-x86 commit in sci-chemistry/gromacs: ChangeLog gromacs-4.5.5-r1.ebuild
@ 2012-10-19 9:50 Justin Lecher (jlec)
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher (jlec) @ 2012-10-19 9:50 UTC (permalink / raw
To: gentoo-commits
jlec 12/10/19 09:50:26
Modified: ChangeLog gromacs-4.5.5-r1.ebuild
Log:
sci-chemistry/gromacs: Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the updated fortran-2.eclass
(Portage version: 2.2.0_alpha141/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Revision Changes Path
1.110 sci-chemistry/gromacs/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.110&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?rev=1.110&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/ChangeLog?r1=1.109&r2=1.110
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v
retrieving revision 1.109
retrieving revision 1.110
diff -u -r1.109 -r1.110
--- ChangeLog 14 Oct 2012 18:57:51 -0000 1.109
+++ ChangeLog 19 Oct 2012 09:50:26 -0000 1.110
@@ -1,6 +1,10 @@
# ChangeLog for sci-chemistry/gromacs
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.109 2012/10/14 18:57:51 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/ChangeLog,v 1.110 2012/10/19 09:50:26 jlec Exp $
+
+ 19 Oct 2012; Justin Lecher <jlec@gentoo.org> gromacs-4.5.5-r1.ebuild:
+ Remove virtual/fortran and always call fortran-2_pkg_setup as intend by the
+ updated fortran-2.eclass
14 Oct 2012; Justin Lecher <jlec@gentoo.org> gromacs-4.5.5-r1.ebuild:
Prepare for fortran2.eclass update
1.10 sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?rev=1.10&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?rev=1.10&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild?r1=1.9&r2=1.10
Index: gromacs-4.5.5-r1.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- gromacs-4.5.5-r1.ebuild 14 Oct 2012 18:57:51 -0000 1.9
+++ gromacs-4.5.5-r1.ebuild 19 Oct 2012 09:50:26 -0000 1.10
@@ -1,6 +1,6 @@
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild,v 1.9 2012/10/14 18:57:51 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/gromacs/gromacs-4.5.5-r1.ebuild,v 1.10 2012/10/19 09:50:26 jlec Exp $
EAPI="4"
@@ -45,7 +45,6 @@
)
blas? ( virtual/blas )
fftw? ( sci-libs/fftw:3.0 )
- fkernels? ( virtual/fortran )
gsl? ( sci-libs/gsl )
lapack? ( virtual/lapack )
mpi? ( virtual/mpi )
@@ -57,10 +56,6 @@
RESTRICT="test"
-pkg_setup() {
- use fkernels && fortran-2_pkg_setup
-}
-
src_prepare() {
#add user patches from /etc/portage/patches/sci-chemistry/gromacs
epatch_user
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2012-03-08 23:04 [gentoo-commits] gentoo-x86 commit in sci-chemistry/gromacs: ChangeLog gromacs-4.5.5-r1.ebuild Brent Baude (ranger)
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2012-10-19 9:50 Justin Lecher (jlec)
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2011-12-19 20:56 Christoph Junghans (ottxor)
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