[gentoo-commits] gentoo-x86 commit in dev-perl/Bio-SamTools: Bio-SamTools-1.330.0.ebuild ChangeLog

[gentoo-commits] gentoo-x86 commit in dev-perl/Bio-SamTools: Bio-SamTools-1.330.0.ebuild ChangeLog

[Robin H. Johnson (robbat2)]

robbat2     12/02/29 08:57:25

  Modified:             ChangeLog
  Added:                Bio-SamTools-1.330.0.ebuild
  Log:
  Version bump via perl-bump experimental tool.
  
  (Portage version: 2.2.0_alpha89/cvs/Linux x86_64)

Revision  Changes    Path
1.6                  dev-perl/Bio-SamTools/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.6&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.6&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?r1=1.5&r2=1.6

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v
retrieving revision 1.5
retrieving revision 1.6
diff -p -w -b -B -u -u -r1.5 -r1.6
--- ChangeLog	25 Sep 2011 11:52:27 -0000	1.5
+++ ChangeLog	29 Feb 2012 08:57:25 -0000	1.6
@@ -1,6 +1,12 @@
 # ChangeLog for dev-perl/Bio-SamTools
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.5 2011/09/25 11:52:27 tove Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.6 2012/02/29 08:57:25 robbat2 Exp $
+
+*Bio-SamTools-1.330.0 (29 Feb 2012)
+
+  29 Feb 2012; Robin H. Johnson <robbat2@gentoo.org>
+  +Bio-SamTools-1.330.0.ebuild:
+  Version bump via perl-bump experimental tool.
 
 *Bio-SamTools-1.310.0 (25 Sep 2011)
 



1.1                  dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild?rev=1.1&content-type=text/plain

Index: Bio-SamTools-1.330.0.ebuild
===================================================================
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild,v 1.1 2012/02/29 08:57:25 robbat2 Exp $

EAPI=4

MODULE_AUTHOR=LDS
MODULE_VERSION=1.33
inherit perl-module

DESCRIPTION="Read SAM/BAM database files"

SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""

RDEPEND="sci-biology/bioperl
	>=sci-biology/samtools-0.1.16"
DEPEND="${RDEPEND}
	virtual/perl-ExtUtils-CBuilder
	virtual/perl-Module-Build
"

SRC_TEST=do

src_prepare() {
	sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \
		-e 's|my $LibFile    = "libbam.a";|my $LibFile    = "libbam.so";|' Build.PL || die
	sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \
		-e 's|#include "khash.h"|#include "bam/khash.h"|' \
		-e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die
	perl-module_src_prepare
}