[gentoo-commits] gentoo-x86 commit in sci-biology/biopython: ChangeLog biopython-1.56.ebuild

[gentoo-commits] gentoo-x86 commit in sci-biology/biopython: ChangeLog biopython-1.56.ebuild

[Arfrever Frehtes Taifersar Arahesis (arfrever)]

arfrever    10/12/13 21:29:03

  Modified:             ChangeLog
  Added:                biopython-1.56.ebuild
  Log:
  Version bump.
  
  (Portage version: 2.2.0_alpha8/cvs/Linux x86_64)

Revision  Changes    Path
1.53                 sci-biology/biopython/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.53&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.53&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.52&r2=1.53

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v
retrieving revision 1.52
retrieving revision 1.53
diff -u -r1.52 -r1.53
--- ChangeLog	31 Oct 2010 17:47:54 -0000	1.52
+++ ChangeLog	13 Dec 2010 21:29:02 -0000	1.53
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/biopython
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.52 2010/10/31 17:47:54 armin76 Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.53 2010/12/13 21:29:02 arfrever Exp $
+
+*biopython-1.56 (13 Dec 2010)
+
+  13 Dec 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
+  -biopython-1.53.ebuild, -biopython-1.54.ebuild, +biopython-1.56.ebuild:
+  Version bump.
 
   31 Oct 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.55.ebuild:
   alpha/sparc stable wrt #341519



1.1                  sci-biology/biopython/biopython-1.56.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.56.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.56.ebuild?rev=1.1&content-type=text/plain

Index: biopython-1.56.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.56.ebuild,v 1.1 2010/12/13 21:29:02 arfrever Exp $

EAPI="3"
PYTHON_DEPEND="2"
SUPPORT_PYTHON_ABIS="1"
RESTRICT_PYTHON_ABIS="3.* *-jython"

inherit distutils eutils

DESCRIPTION="Biopython - Python modules for computational molecular biology"
HOMEPAGE="http://www.biopython.org http://pypi.python.org/pypi/biopython"
SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"

LICENSE="as-is"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~ppc ~sparc ~x86"
IUSE="mysql postgres"

RDEPEND="dev-python/numpy
	>=dev-python/reportlab-2.0
	mysql? ( dev-python/mysql-python )
	postgres? ( dev-python/psycopg )"
DEPEND="${RDEPEND}
	sys-devel/flex"

PYTHON_CFLAGS=("2.* + -fno-strict-aliasing")

DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1"
DOCS="CONTRIB DEPRECATED NEWS README"
PYTHON_MODNAME="Bio BioSQL"

src_prepare() {
	distutils_src_prepare
	epatch "${FILESDIR}/${PN}-1.51-flex.patch"
}

src_test() {
	testing() {
		cd Tests
		PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py
	}
	python_execute_function --nonfatal -s testing
}

src_install() {
	distutils_src_install

	insinto /usr/share/doc/${PF}
	doins -r Doc/* || die "Installation of documentation failed"
	insinto /usr/share/${PN}
	cp -r --preserve=mode Scripts Tests "${ED}usr/share/${PN}" || die "Installation of shared files failed"
}

[gentoo-commits] gentoo-x86 commit in sci-biology/biopython: ChangeLog biopython-1.56.ebuild

[Markos Chandras (hwoarang)]

hwoarang    11/06/23 14:55:47

  Modified:             ChangeLog
  Removed:              biopython-1.56.ebuild
  Log:
  Remove old ebuilds. Requested by Arfrever
  
  (Portage version: 2.1.9.49/cvs/Linux x86_64)

Revision  Changes    Path
1.65                 sci-biology/biopython/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.65&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.65&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.64&r2=1.65

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v
retrieving revision 1.64
retrieving revision 1.65
diff -u -r1.64 -r1.65
--- ChangeLog	28 May 2011 13:52:36 -0000	1.64
+++ ChangeLog	23 Jun 2011 14:55:47 -0000	1.65
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/biopython
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.64 2011/05/28 13:52:36 ranger Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.65 2011/06/23 14:55:47 hwoarang Exp $
+
+  23 Jun 2011; Markos Chandras <hwoarang@gentoo.org> -biopython-1.56.ebuild:
+  Remove old ebuilds. Requested by Arfrever
 
   28 May 2011; Brent Baude <ranger@gentoo.org> biopython-1.57.ebuild:
   Marking biopython-1.57 ppc for bug 365877