From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1QGSos-0008N8-Um for garchives@archives.gentoo.org; Sun, 01 May 2011 09:20:03 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 691251C037; Sun, 1 May 2011 09:19:54 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id 3243C1C037 for ; Sun, 1 May 2011 09:19:54 +0000 (UTC) Received: from flycatcher.gentoo.org (flycatcher.gentoo.org [81.93.255.6]) (using TLSv1 with cipher ADH-CAMELLIA256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 975E71B4036 for ; Sun, 1 May 2011 09:19:53 +0000 (UTC) Received: by flycatcher.gentoo.org (Postfix, from userid 2264) id 38AC520054; Sun, 1 May 2011 09:19:52 +0000 (UTC) From: "Justin Lecher (jlec)" To: gentoo-commits@lists.gentoo.org Reply-To: gentoo-dev@lists.gentoo.org, jlec@gentoo.org Subject: [gentoo-commits] gentoo-x86 commit in sci-biology/bwa: ChangeLog bwa-0.5.9.ebuild X-VCS-Repository: gentoo-x86 X-VCS-Files: ChangeLog bwa-0.5.9.ebuild X-VCS-Directories: sci-biology/bwa X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher Content-Type: text/plain; charset=utf8 Message-Id: <20110501091952.38AC520054@flycatcher.gentoo.org> Date: Sun, 1 May 2011 09:19:52 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: X-Archives-Hash: d20db93d0c1836fa06cfab1ae288db19 jlec 11/05/01 09:19:52 Modified: ChangeLog Added: bwa-0.5.9.ebuild Log: Version BUmp, #354925 =20 (Portage version: 2.2.0_alpha30/cvs/Linux x86_64) Revision Changes Path 1.10 sci-biology/bwa/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/Ch= angeLog?rev=3D1.10&view=3Dmarkup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/Ch= angeLog?rev=3D1.10&content-type=3Dtext/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/Ch= angeLog?r1=3D1.9&r2=3D1.10 Index: ChangeLog =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D RCS file: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v retrieving revision 1.9 retrieving revision 1.10 diff -u -r1.9 -r1.10 --- ChangeLog 9 Oct 2010 20:15:55 -0000 1.9 +++ ChangeLog 1 May 2011 09:19:52 -0000 1.10 @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/bwa -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.9 2010/= 10/09 20:15:55 weaver Exp $ +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.10 2011= /05/01 09:19:52 jlec Exp $ + +*bwa-0.5.9 (01 May 2011) + + 01 May 2011; Justin Lecher +bwa-0.5.9.ebuild: + Version BUmp, #354925 =20 *bwa-0.5.8a (09 Oct 2010) =20 1.1 sci-biology/bwa/bwa-0.5.9.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bw= a-0.5.9.ebuild?rev=3D1.1&view=3Dmarkup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bw= a-0.5.9.ebuild?rev=3D1.1&content-type=3Dtext/plain Index: bwa-0.5.9.ebuild =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D # Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.5.9.ebuild,v 1.1= 2011/05/01 09:19:52 jlec Exp $ EAPI=3D2 inherit flag-o-matic toolchain-funcs DESCRIPTION=3D"Burrows-Wheeler Alignment Tool, a fast short genomic seque= nce aligner" HOMEPAGE=3D"http://bio-bwa.sourceforge.net/" SRC_URI=3D"mirror://sourceforge/bio-bwa/${P}.tar.bz2" LICENSE=3D"GPL-3" SLOT=3D"0" IUSE=3D"" KEYWORDS=3D"~amd64 ~x86 ~x64-macos" src_prepare() { sed -e "s/\$(CC) \$(CFLAGS)/\$(CC) \$(LDFLAGS) \$(CFLAGS)/" \ -i "${S}"/Makefile || die #336348 append-flags -pthread } src_compile() { emake -e CC=3D"$(tc-getCC)" || die } src_install() { dobin bwa || die doman bwa.1 || die exeinto /usr/share/${PN} doexe solid2fastq.pl || die doexe qualfa2fq.pl || die dodoc ChangeLog NEWS || die }