[gentoo-commits] gentoo-x86 commit in sci-biology/bwa: ChangeLog bwa-0.5.9.ebuild

[gentoo-commits] gentoo-x86 commit in sci-biology/bwa: ChangeLog bwa-0.5.9.ebuild

[Justin Lecher (jlec)]

jlec        11/05/01 09:19:52

  Modified:             ChangeLog
  Added:                bwa-0.5.9.ebuild
  Log:
  Version BUmp, #354925
  
  (Portage version: 2.2.0_alpha30/cvs/Linux x86_64)

Revision  Changes    Path
1.10                 sci-biology/bwa/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.10&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.10&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?r1=1.9&r2=1.10

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- ChangeLog	9 Oct 2010 20:15:55 -0000	1.9
+++ ChangeLog	1 May 2011 09:19:52 -0000	1.10
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/bwa
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.9 2010/10/09 20:15:55 weaver Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.10 2011/05/01 09:19:52 jlec Exp $
+
+*bwa-0.5.9 (01 May 2011)
+
+  01 May 2011; Justin Lecher <jlec@gentoo.org> +bwa-0.5.9.ebuild:
+  Version BUmp, #354925
 
 *bwa-0.5.8a (09 Oct 2010)
 



1.1                  sci-biology/bwa/bwa-0.5.9.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.5.9.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.5.9.ebuild?rev=1.1&content-type=text/plain

Index: bwa-0.5.9.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.5.9.ebuild,v 1.1 2011/05/01 09:19:52 jlec Exp $

EAPI=2

inherit flag-o-matic toolchain-funcs

DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
HOMEPAGE="http://bio-bwa.sourceforge.net/"
SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2"

LICENSE="GPL-3"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86 ~x64-macos"

src_prepare() {
	sed -e "s/\$(CC) \$(CFLAGS)/\$(CC) \$(LDFLAGS) \$(CFLAGS)/" \
		-i "${S}"/Makefile || die #336348
	append-flags -pthread
}

src_compile() {
	emake -e CC="$(tc-getCC)" || die
}

src_install() {
	dobin bwa || die
	doman bwa.1 || die
	exeinto /usr/share/${PN}
	doexe solid2fastq.pl || die
	doexe qualfa2fq.pl || die
	dodoc ChangeLog NEWS || die
}