From: "Justin Lecher (jlec)" <jlec@gentoo.org>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] gentoo-x86 commit in sci-biology/bwa: ChangeLog bwa-0.5.9.ebuild
Date: Sun, 1 May 2011 09:19:52 +0000 (UTC) [thread overview]
Message-ID: <20110501091952.38AC520054@flycatcher.gentoo.org> (raw)
jlec 11/05/01 09:19:52
Modified: ChangeLog
Added: bwa-0.5.9.ebuild
Log:
Version BUmp, #354925
(Portage version: 2.2.0_alpha30/cvs/Linux x86_64)
Revision Changes Path
1.10 sci-biology/bwa/ChangeLog
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.10&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?rev=1.10&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/ChangeLog?r1=1.9&r2=1.10
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- ChangeLog 9 Oct 2010 20:15:55 -0000 1.9
+++ ChangeLog 1 May 2011 09:19:52 -0000 1.10
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/bwa
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.9 2010/10/09 20:15:55 weaver Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.10 2011/05/01 09:19:52 jlec Exp $
+
+*bwa-0.5.9 (01 May 2011)
+
+ 01 May 2011; Justin Lecher <jlec@gentoo.org> +bwa-0.5.9.ebuild:
+ Version BUmp, #354925
*bwa-0.5.8a (09 Oct 2010)
1.1 sci-biology/bwa/bwa-0.5.9.ebuild
file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.5.9.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/bwa-0.5.9.ebuild?rev=1.1&content-type=text/plain
Index: bwa-0.5.9.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.5.9.ebuild,v 1.1 2011/05/01 09:19:52 jlec Exp $
EAPI=2
inherit flag-o-matic toolchain-funcs
DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
HOMEPAGE="http://bio-bwa.sourceforge.net/"
SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2"
LICENSE="GPL-3"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86 ~x64-macos"
src_prepare() {
sed -e "s/\$(CC) \$(CFLAGS)/\$(CC) \$(LDFLAGS) \$(CFLAGS)/" \
-i "${S}"/Makefile || die #336348
append-flags -pthread
}
src_compile() {
emake -e CC="$(tc-getCC)" || die
}
src_install() {
dobin bwa || die
doman bwa.1 || die
exeinto /usr/share/${PN}
doexe solid2fastq.pl || die
doexe qualfa2fq.pl || die
dodoc ChangeLog NEWS || die
}
reply other threads:[~2011-05-01 9:20 UTC|newest]
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