[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Christoph Junghans]

commit:     271a9f98674f3e5d3f989553e2d3eb0df445c800
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Mon Jul 18 16:38:42 2016 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Mon Jul 18 19:40:29 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=271a9f98

sci-physics/espresso: version bump

Package-Manager: portage-2.2.28

 sci-physics/espresso/Manifest              |   1 +
 sci-physics/espresso/espresso-3.3.1.ebuild | 133 +++++++++++++++++++++++++++++
 2 files changed, 134 insertions(+)

diff --git a/sci-physics/espresso/Manifest b/sci-physics/espresso/Manifest
index 638d0ca..73ae97c 100644
--- a/sci-physics/espresso/Manifest
+++ b/sci-physics/espresso/Manifest
@@ -1 +1,2 @@
 DIST espresso-3.3.0.tar.gz 18952622 SHA256 64ea2684e4fc0d31c11969e49ec74c25138b4f74686f67b93c7e1103833ff08f SHA512 90edbbdc8d7f7247b5179fce0fad796a9488f82a1754519918c6588c932050675397d36e0167aae770db9803b6c22f7d14d23c04cf307d10802afd3d5d5edc20 WHIRLPOOL 3e9547f2da6676edf3de415fa848301f2959c3dfeef1c3f461b4e1eb202224ead7635748b47d42edb9f661dc5d672f38168e15ab6c55a9c9d7f102ae11f8574e
+DIST espresso-3.3.1.tar.gz 18986557 SHA256 8576fc1fe59e04dec4fa0d354b7ec52365622860099624f36bddbb2b472c0c70 SHA512 3fc6e681e625f2cf98ac0aa3b1c16fbe17b9f9aa8f79f2e89926501cbb68621d171d6c6a22f42f9f60298ee31520ca712ace57d57738d2cf76f7ae2f7c0436b1 WHIRLPOOL 7075cbb8fba944cda8290a3f27650fcdd2b466495c6d4697ae3074c60ded86e08ea4ea0d9336c8ca859f7b3303cd496dba2972c9c8205a7b3cafbe36fcfc8a40

diff --git a/sci-physics/espresso/espresso-3.3.1.ebuild b/sci-physics/espresso/espresso-3.3.1.ebuild
new file mode 100644
index 0000000..7495405
--- /dev/null
+++ b/sci-physics/espresso/espresso-3.3.1.ebuild
@@ -0,0 +1,133 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit python-single-r1 savedconfig
+
+DESCRIPTION="Extensible Simulation Package for Research on Soft matter"
+HOMEPAGE="http://espressomd.org"
+
+if [[ ${PV} = 9999 ]]; then
+	EGIT_REPO_URI="git://github.com/espressomd/espresso.git https://github.com/espressomd/espresso.git"
+	EGIT_BRANCH="master"
+	inherit autotools git-r3
+	KEYWORDS=""
+else
+	SRC_URI="mirror://nongnu/${PN}md/${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE="X cuda doc examples +fftw mpi packages python test -tk"
+
+REQUIRED_USE="
+	python? ( ${PYTHON_REQUIRED_USE} )
+	tk? ( X )"
+
+RESTRICT="tk? ( test )"
+
+RDEPEND="
+	python? (
+		${PYTHON_DEPS}
+		dev-python/cython[${PYTHON_USEDEP}]
+		dev-python/numpy[${PYTHON_USEDEP}]
+	)
+	dev-lang/tcl:0=
+	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
+	fftw? ( sci-libs/fftw:3.0 )
+	mpi? ( virtual/mpi )
+	packages? ( dev-tcltk/tcllib )
+	tk? ( >=dev-lang/tk-8.4.18-r1:0= )
+	X? ( x11-libs/libX11 )"
+
+DEPEND="${RDEPEND}
+	doc? (
+		app-doc/doxygen[dot]
+		dev-texlive/texlive-latexextra
+		virtual/latex-base )"
+
+DOCS=( AUTHORS NEWS README ChangeLog )
+
+pkg_setup() {
+	use python && python-single-r1_pkg_setup
+}
+
+src_prepare() {
+	use cuda && cuda_src_prepare
+	default
+}
+
+src_configure() {
+	[[ ${PV} = 9999 ]] && eautoreconf
+	CXX=$(usex mpi "mpic++" "$(tc-getCXX)") econf \
+		$(use_with fftw) \
+		$(use_with cuda) \
+		$(use_with python python-interface) \
+		$(use_with mpi) \
+		$(use_with tk) \
+		$(use_with X x)
+	restore_config myconfig.hpp
+}
+
+src_compile() {
+	default
+	use doc && emake doxygen
+	[[ ${PV} = 9999 ]] && use doc && emake ug dg tutorials
+}
+
+src_install() {
+	local i
+
+	default
+
+	insinto /usr/share/${PN}
+	doins myconfig-sample.hpp
+
+	save_config src/core/myconfig-final.hpp
+
+	if use doc; then
+		if [[ ${PV} = 9999 ]] ; then
+			newdoc doc/dg/dg.pdf developer_guide.pdf
+			newdoc doc/ug/ug.pdf user_guide.pdf
+			for i in doc/tutorials/*/[0-9]*.pdf; do
+				newdoc "${i}" "tutorial_${i##*/}"
+			done
+		else
+			newdoc "${S}"/doc/ug/ug.pdf user_guide.pdf
+			for i in "${S}"/doc/tutorials/*/[0-9]*.pdf; do
+				newdoc "${i}" "tutorial_${i##*/}"
+			done
+		fi
+		dodoc -r doc/doxygen/html
+	fi
+
+	if use examples; then
+		insinto /usr/share/${PN}/examples
+		doins -r samples/*
+	fi
+
+	if use packages; then
+		insinto /usr/share/${PN}/packages
+		doins -r packages/*
+	fi
+}
+
+pkg_postinst() {
+	echo
+	elog "Please read and cite:"
+	elog "ESPResSo, Comput. Phys. Commun. 174(9) ,704, 2006."
+	elog "http://dx.doi.org/10.1016/j.cpc.2005.10.005"
+	echo
+	elog "If you need more features, change"
+	elog "/etc/portage/savedconfig/${CATEGORY}/${PF}"
+	elog "and reemerge with USE=savedconfig"
+	echo
+	elog "For a full feature list see:"
+	elog "/usr/share/${PN}/myconfig-sample.h"
+	echo
+}

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Christoph Junghans]

commit:     ddc965faf13b5bb5d69e206f4ad4c3167076ec49
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Jul 19 16:57:58 2016 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Jul 19 16:58:17 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ddc965fa

sci-physics/espresso: added live ebuild

Package-Manager: portage-2.2.28

 sci-physics/espresso/espresso-9999.ebuild | 139 ++++++++++++++++++++++++++++++
 1 file changed, 139 insertions(+)

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
new file mode 100644
index 0000000..01c45af
--- /dev/null
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -0,0 +1,139 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+CMAKE_MAKEFILE_GENERATOR="ninja"
+
+inherit cmake-utils python-single-r1 savedconfig
+
+DESCRIPTION="Extensible Simulation Package for Research on Soft matter"
+HOMEPAGE="http://espressomd.org"
+
+if [[ ${PV} = 9999 ]]; then
+	EGIT_REPO_URI="git://github.com/espressomd/espresso.git https://github.com/espressomd/espresso.git"
+	EGIT_BRANCH="master"
+	inherit git-r3
+	KEYWORDS=""
+else
+	SRC_URI="mirror://nongnu/${PN}md/${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE="cuda doc examples +fftw +hdf5 packages python test -tk"
+
+REQUIRED_USE=" python? ( ${PYTHON_REQUIRED_USE} )"
+
+RDEPEND="
+	python? (
+		${PYTHON_DEPS}
+		>dev-python/cython-0.22[${PYTHON_USEDEP}]
+		dev-python/numpy[${PYTHON_USEDEP}]
+	)
+	dev-lang/tcl:0=
+	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
+	fftw? ( sci-libs/fftw:3.0 )
+	dev-libs/boost:=[mpi]
+	virtual/mpi
+	hdf5? ( sci-libs/hdf5 )
+	packages? ( dev-tcltk/tcllib )
+	tk? ( >=dev-lang/tk-8.4.18-r1:0= )"
+
+DEPEND="${RDEPEND}
+	doc? (
+		app-doc/doxygen[dot]
+		dev-texlive/texlive-latexextra
+		virtual/latex-base )"
+
+DOCS=( AUTHORS NEWS README ChangeLog )
+
+pkg_setup() {
+	use python && python-single-r1_pkg_setup
+}
+
+src_prepare() {
+	use cuda && cuda_src_prepare
+	cmake-utils_src_prepare
+}
+
+src_configure() {
+	mycmakeargs=(
+		-DWITH_CUDA=$(usex cuda)
+		-DWITH_PYTHON=$(usex python)
+		-DWITH_TESTS=$(usex test)
+		-DWITH_H5MD=$(usex hdf5)
+		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw)
+		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
+		-DCMAKE_SKIP_RPATH=YES
+	)
+	cmake-utils_src_configure
+}
+
+src_compile() {
+	cmake-utils_src_compile
+	use doc && cmake-utils_src_make doxygen
+	[[ ${PV} = 9999 ]] && use doc && cmake-utils_src_make ug dg tutorials
+}
+
+src_install() {
+	local i
+
+	#https://github.com/espressomd/espresso/issues/733
+	#cmake-utils_src_install
+	dobin ${CMAKE_BUILD_DIR}/Espresso
+	dolib.so "${CMAKE_BUILD_DIR}"/src/core/{,*}/lib*.so
+	if use python; then
+		insinto $(python_get_sitedir)/${PN}md
+		doins -r "${CMAKE_BUILD_DIR}"/src/python/espressomd
+	fi
+
+	insinto /usr/share/${PN}/
+	doins ${CMAKE_BUILD_DIR}/myconfig-sample.hpp
+
+	save_config ${CMAKE_BUILD_DIR}/src/core/myconfig-final.hpp
+
+	if use doc; then
+		if [[ ${PV} = 9999 ]] ; then
+			newdoc ${CMAKE_BUILD_DIR}/doc/dg/dg.pdf developer_guide.pdf
+			newdoc ${CMAKE_BUILD_DIR}/doc/ug/ug.pdf user_guide.pdf
+			for i in ${CMAKE_BUILD_DIR}/doc/tutorials/*/*/[0-9]*.pdf; do
+				newdoc "${i}" "tutorial_${i##*/}"
+			done
+		else
+			newdoc "${S}"/doc/ug/ug.pdf user_guide.pdf
+			for i in "${S}"/doc/tutorials/*/*/[0-9]*.pdf; do
+				newdoc "${i}" "tutorial_${i##*/}"
+			done
+		fi
+		dodoc -r ${CMAKE_BUILD_DIR}/doc/doxygen/html
+	fi
+
+	if use examples; then
+		insinto /usr/share/${PN}/examples
+		doins -r samples/*
+	fi
+
+	if use packages; then
+		insinto /usr/share/${PN}/packages
+		doins -r packages/*
+	fi
+}
+
+pkg_postinst() {
+	echo
+	elog "Please read and cite:"
+	elog "ESPResSo, Comput. Phys. Commun. 174(9) ,704, 2006."
+	elog "http://dx.doi.org/10.1016/j.cpc.2005.10.005"
+	echo
+	elog "If you need more features, change"
+	elog "/etc/portage/savedconfig/${CATEGORY}/${PF}"
+	elog "and reemerge with USE=savedconfig"
+	echo
+	elog "For a full feature list see:"
+	elog "/usr/share/${PN}/myconfig-sample.h"
+	echo
+}

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Christoph Junghans]

commit:     48013638ebb8cafa036106d6ed9c62db6e5fde77
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Fri Jul 22 20:30:05 2016 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Fri Jul 22 20:30:11 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=48013638

sci-physics/espresso: live ebuild update

Installed fixed in espressomd/espresso#749
Package-Manager: portage-2.2.28

 sci-physics/espresso/espresso-9999.ebuild | 12 +++---------
 1 file changed, 3 insertions(+), 9 deletions(-)

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index 01c45af..66a0214 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -69,6 +69,7 @@ src_configure() {
 		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw)
 		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
 		-DCMAKE_SKIP_RPATH=YES
+		-DLIBDIR=$(get_libdir)
 	)
 	cmake-utils_src_configure
 }
@@ -82,14 +83,7 @@ src_compile() {
 src_install() {
 	local i
 
-	#https://github.com/espressomd/espresso/issues/733
-	#cmake-utils_src_install
-	dobin ${CMAKE_BUILD_DIR}/Espresso
-	dolib.so "${CMAKE_BUILD_DIR}"/src/core/{,*}/lib*.so
-	if use python; then
-		insinto $(python_get_sitedir)/${PN}md
-		doins -r "${CMAKE_BUILD_DIR}"/src/python/espressomd
-	fi
+	cmake-utils_src_install
 
 	insinto /usr/share/${PN}/
 	doins ${CMAKE_BUILD_DIR}/myconfig-sample.hpp
@@ -134,6 +128,6 @@ pkg_postinst() {
 	elog "and reemerge with USE=savedconfig"
 	echo
 	elog "For a full feature list see:"
-	elog "/usr/share/${PN}/myconfig-sample.h"
+	elog "/usr/share/${PN}/myconfig-sample.hpp"
 	echo
 }

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Christoph Junghans]

commit:     951bafca9ed6046b5584a6d7a9b44de579fff99d
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Wed Aug  3 18:00:08 2016 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Wed Aug  3 18:00:25 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=951bafca

sci-physics/espresso: live ebuild update

Package-Manager: portage-2.2.28

 sci-physics/espresso/espresso-9999.ebuild | 50 +++++++++++++++----------------
 sci-physics/espresso/metadata.xml         |  2 +-
 2 files changed, 25 insertions(+), 27 deletions(-)

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index 66a0214..6b906a0 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -24,24 +24,25 @@ fi
 
 LICENSE="GPL-3"
 SLOT="0"
-IUSE="cuda doc examples +fftw +hdf5 packages python test -tk"
+IUSE="cuda doc examples +fftw +hdf5 packages +python tcl test"
 
-REQUIRED_USE=" python? ( ${PYTHON_REQUIRED_USE} )"
+REQUIRED_USE="
+	packages? ( tcl )
+	|| ( python tcl )
+	${PYTHON_REQUIRED_USE}"
 
 RDEPEND="
+	${PYTHON_DEPS}
 	python? (
-		${PYTHON_DEPS}
 		>dev-python/cython-0.22[${PYTHON_USEDEP}]
 		dev-python/numpy[${PYTHON_USEDEP}]
 	)
-	dev-lang/tcl:0=
+	tcl? ( dev-lang/tcl:0= )
 	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
 	fftw? ( sci-libs/fftw:3.0 )
 	dev-libs/boost:=[mpi]
-	virtual/mpi
 	hdf5? ( sci-libs/hdf5 )
-	packages? ( dev-tcltk/tcllib )
-	tk? ( >=dev-lang/tk-8.4.18-r1:0= )"
+	packages? ( dev-tcltk/tcllib )"
 
 DEPEND="${RDEPEND}
 	doc? (
@@ -51,10 +52,6 @@ DEPEND="${RDEPEND}
 
 DOCS=( AUTHORS NEWS README ChangeLog )
 
-pkg_setup() {
-	use python && python-single-r1_pkg_setup
-}
-
 src_prepare() {
 	use cuda && cuda_src_prepare
 	cmake-utils_src_prepare
@@ -63,9 +60,12 @@ src_prepare() {
 src_configure() {
 	mycmakeargs=(
 		-DWITH_CUDA=$(usex cuda)
+		-DPYTHON_EXECUTABLE="${PYTHON}"
 		-DWITH_PYTHON=$(usex python)
+		-DWITH_TCL=$(usex tcl)
 		-DWITH_TESTS=$(usex test)
-		-DWITH_H5MD=$(usex hdf5)
+		-DWITH_SCAFACOS=ON
+		-DINSTALL_PYPRESSO=OFF
 		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw)
 		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
 		-DCMAKE_SKIP_RPATH=YES
@@ -81,7 +81,7 @@ src_compile() {
 }
 
 src_install() {
-	local i
+	local i docdir="${S}"
 
 	cmake-utils_src_install
 
@@ -91,24 +91,22 @@ src_install() {
 	save_config ${CMAKE_BUILD_DIR}/src/core/myconfig-final.hpp
 
 	if use doc; then
-		if [[ ${PV} = 9999 ]] ; then
-			newdoc ${CMAKE_BUILD_DIR}/doc/dg/dg.pdf developer_guide.pdf
-			newdoc ${CMAKE_BUILD_DIR}/doc/ug/ug.pdf user_guide.pdf
-			for i in ${CMAKE_BUILD_DIR}/doc/tutorials/*/*/[0-9]*.pdf; do
-				newdoc "${i}" "tutorial_${i##*/}"
-			done
-		else
-			newdoc "${S}"/doc/ug/ug.pdf user_guide.pdf
-			for i in "${S}"/doc/tutorials/*/*/[0-9]*.pdf; do
-				newdoc "${i}" "tutorial_${i##*/}"
+		[[ ${PV} = 9999 ]] && docdir="${CMAKE_BUILD_DIR}"
+		newdoc "${docdir}"/doc/dg/dg.pdf developer_guide.pdf
+		newdoc "${docdir}"/doc/ug/ug.pdf user_guide.pdf
+		for j in $(usev python) $(usev tcl); do
+			for i in "${docdir}/doc/tutorials/${j}"/*/[0-9]*.pdf; do
+		  		newdoc "${i}" "${j}_tutorial_${i##*/}"
 			done
-		fi
+		done
 		dodoc -r ${CMAKE_BUILD_DIR}/doc/doxygen/html
 	fi
 
 	if use examples; then
-		insinto /usr/share/${PN}/examples
-		doins -r samples/*
+		for i in $(usev python) $(usev tcl); do
+			insinto "/usr/share/${PN}/examples/${i}"
+			doins -r samples/${i}/.
+		done
 	fi
 
 	if use packages; then

diff --git a/sci-physics/espresso/metadata.xml b/sci-physics/espresso/metadata.xml
index 13db459..3d99b65 100644
--- a/sci-physics/espresso/metadata.xml
+++ b/sci-physics/espresso/metadata.xml
@@ -12,6 +12,6 @@
   <use>
     <flag name="cuda">Enable cuda support</flag>
     <flag name="examples">Installs the examples</flag>
-    <flag name="packages">Installs extra subpackages</flag>
+    <flag name="packages">Installs extra TCL subpackages</flag>
   </use>
 </pkgmetadata>

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Christoph Junghans]

commit:     d80d2bcc2ae5878a1608c6094f1164ad86519c1e
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Sep  6 21:25:06 2016 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Sep  6 21:25:06 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d80d2bcc

sci-physics/espresso: add support for python3

Package-Manager: portage-2.2.28

 sci-physics/espresso/espresso-9999.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index 6b906a0..caba652 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -4,7 +4,7 @@
 
 EAPI=6
 
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python{2_7,3_3,3_4} )
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
 inherit cmake-utils python-single-r1 savedconfig

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Christoph Junghans]

commit:     f6a0d3a162bfd5d496af1db2f7d7c76b616345f8
Author:     Christoph Junghans <junghans <AT> gentoo <DOT> org>
AuthorDate: Mon Nov 14 01:56:40 2016 +0000
Commit:     Christoph Junghans <junghans <AT> gentoo <DOT> org>
CommitDate: Mon Nov 14 01:56:40 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f6a0d3a1

sci-physics/espresso: update metadata

Package-Manager: portage-2.3.0

 sci-physics/espresso/metadata.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-physics/espresso/metadata.xml b/sci-physics/espresso/metadata.xml
index 3d99b65..76b9c10 100644
--- a/sci-physics/espresso/metadata.xml
+++ b/sci-physics/espresso/metadata.xml
@@ -2,7 +2,7 @@
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <maintainer type="person">
-    <email>ottxor@gentoo.org</email>
+    <email>junghans@gentoo.org</email>
     <name>Christoph Junghans</name>
   </maintainer>
   <maintainer type="project">

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Christoph Junghans]

commit:     2a73c4db0593360558c423674a37a147dfecb6e2
Author:     Christoph Junghans <junghans <AT> gentoo <DOT> org>
AuthorDate: Wed Nov 16 20:53:01 2016 +0000
Commit:     Christoph Junghans <junghans <AT> gentoo <DOT> org>
CommitDate: Wed Nov 16 20:53:38 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2a73c4db

sci-physics/espresso: fix deps

Package-Manager: portage-2.3.0

 sci-physics/espresso/espresso-9999.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index 48c5e8d..6a10134 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -41,7 +41,7 @@ RDEPEND="
 	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
 	fftw? ( sci-libs/fftw:3.0 )
 	dev-libs/boost:=[mpi]
-	hdf5? ( sci-libs/hdf5 )
+	hdf5? ( sci-libs/hdf5:= )
 	packages? ( dev-tcltk/tcllib )"
 
 DEPEND="${RDEPEND}

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Tobias Klausmann]

commit:     3958d0e342333de4972e34ade8cb60b20e8180e4
Author:     Tobias Klausmann <klausman <AT> gentoo <DOT> org>
AuthorDate: Mon Mar  6 13:47:48 2017 +0000
Commit:     Tobias Klausmann <klausman <AT> gentoo <DOT> org>
CommitDate: Mon Mar  6 13:47:48 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3958d0e3

sci-physics/espresso: Fix whitespace and drop CVS header

Package-Manager: Portage-2.3.4, Repoman-2.3.2

 sci-physics/espresso/espresso-4.0_pre20170228.ebuild | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/sci-physics/espresso/espresso-4.0_pre20170228.ebuild b/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
index 252f74e2e5c..dc6d46c9b7c 100644
--- a/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
+++ b/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
@@ -1,6 +1,5 @@
 # Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Id$
 
 EAPI=6
 
@@ -91,7 +90,7 @@ src_install() {
 		newdoc "${docdir}"/doc/dg/dg.pdf developer_guide.pdf
 		newdoc "${docdir}"/doc/ug/ug.pdf user_guide.pdf
 		for i in "${docdir}/doc/tutorials/python"/*/[0-9]*.pdf; do
-		 	newdoc "${i}" "tutorial_${i##*/}"
+			newdoc "${i}" "tutorial_${i##*/}"
 		done
 		dodoc -r ${CMAKE_BUILD_DIR}/doc/doxygen/html
 	fi

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Pacho Ramos]

commit:     49310e382d287d466243732e6f4b2307869de878
Author:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Thu Jun 15 17:24:13 2017 +0000
Commit:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Thu Jun 15 17:24:13 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=49310e38

sci-physics/espresso: Support newer python

Package-Manager: Portage-2.3.6, Repoman-2.3.2

 sci-physics/espresso/espresso-4.0_pre20170228.ebuild | 2 +-
 sci-physics/espresso/espresso-9999.ebuild            | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-physics/espresso/espresso-4.0_pre20170228.ebuild b/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
index dc6d46c9b7c..ac559653418 100644
--- a/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
+++ b/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=6
 
-PYTHON_COMPAT=( python{2_7,3_4} )
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
 inherit cmake-utils python-single-r1 savedconfig

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index 6bdb32dbb78..2fa536f63bd 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
-PYTHON_COMPAT=( python{2_7,3_4} )
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
 inherit cmake-utils python-single-r1 savedconfig

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Christoph Junghans]

commit:     118d8d3cc94dd0553de0fc287b7a155982368f74
Author:     Christoph Junghans <junghans <AT> gentoo <DOT> org>
AuthorDate: Mon Jul 17 14:52:35 2017 +0000
Commit:     Christoph Junghans <junghans <AT> gentoo <DOT> org>
CommitDate: Mon Jul 17 14:57:53 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=118d8d3c

sci-physics/espresso: remove old (bug #595124, #625338)

Package-Manager: Portage-2.3.6, Repoman-2.3.1

 sci-physics/espresso/Manifest              |   2 -
 sci-physics/espresso/espresso-3.3.0.ebuild | 135 -----------------------------
 sci-physics/espresso/espresso-3.3.1.ebuild | 132 ----------------------------
 3 files changed, 269 deletions(-)

diff --git a/sci-physics/espresso/Manifest b/sci-physics/espresso/Manifest
index 0b243949f69..65391c63a9d 100644
--- a/sci-physics/espresso/Manifest
+++ b/sci-physics/espresso/Manifest
@@ -1,3 +1 @@
-DIST espresso-3.3.0.tar.gz 18952622 SHA256 64ea2684e4fc0d31c11969e49ec74c25138b4f74686f67b93c7e1103833ff08f SHA512 90edbbdc8d7f7247b5179fce0fad796a9488f82a1754519918c6588c932050675397d36e0167aae770db9803b6c22f7d14d23c04cf307d10802afd3d5d5edc20 WHIRLPOOL 3e9547f2da6676edf3de415fa848301f2959c3dfeef1c3f461b4e1eb202224ead7635748b47d42edb9f661dc5d672f38168e15ab6c55a9c9d7f102ae11f8574e
-DIST espresso-3.3.1.tar.gz 18986557 SHA256 8576fc1fe59e04dec4fa0d354b7ec52365622860099624f36bddbb2b472c0c70 SHA512 3fc6e681e625f2cf98ac0aa3b1c16fbe17b9f9aa8f79f2e89926501cbb68621d171d6c6a22f42f9f60298ee31520ca712ace57d57738d2cf76f7ae2f7c0436b1 WHIRLPOOL 7075cbb8fba944cda8290a3f27650fcdd2b466495c6d4697ae3074c60ded86e08ea4ea0d9336c8ca859f7b3303cd496dba2972c9c8205a7b3cafbe36fcfc8a40
 DIST espresso-4.0_pre20170228.tar.gz 23621395 SHA256 01e6770949db7bfad9dba3776a644dd0c0758e3781edf23363d7d2671ee14b01 SHA512 7d35648d447af3282a76d9d68cfe681734ec18794a38b09e0ae9233f63b62450c643643bcec999ea9c7d4ba070d4fc6f8dc64db8145f536ae017a67ff2d0e0e2 WHIRLPOOL 02ef0d937726a1abe3f8df4f19ed62008b69494304cf4d569d74936d834bcb20e4a0bd5d6edff009c74c8e16f6b14f9c794ff209c8e39e6d8eed785e5356d6d6

diff --git a/sci-physics/espresso/espresso-3.3.0.ebuild b/sci-physics/espresso/espresso-3.3.0.ebuild
deleted file mode 100644
index 85a3ab47bca..00000000000
--- a/sci-physics/espresso/espresso-3.3.0.ebuild
+++ /dev/null
@@ -1,135 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit autotools-utils python-single-r1 savedconfig
-
-DESCRIPTION="Extensible Simulation Package for Research on Soft matter"
-HOMEPAGE="http://espressomd.org"
-
-if [[ ${PV} = 9999 ]]; then
-	EGIT_REPO_URI="git://git.savannah.nongnu.org/espressomd.git"
-	EGIT_BRANCH="master"
-	AUTOTOOLS_AUTORECONF=1
-	inherit git-r3
-	KEYWORDS=""
-else
-	SRC_URI="mirror://nongnu/${PN}md/${P}.tar.gz"
-	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
-fi
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE="X cuda doc examples +fftw mpi packages python test -tk"
-
-REQUIRED_USE="
-	python? ( ${PYTHON_REQUIRED_USE} )
-	tk? ( X )"
-
-RESTRICT="tk? ( test )"
-
-RDEPEND="
-	python? (
-		${PYTHON_DEPS}
-		dev-python/cython[${PYTHON_USEDEP}]
-		dev-python/numpy[${PYTHON_USEDEP}]
-	)
-	dev-lang/tcl:0=
-	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
-	fftw? ( sci-libs/fftw:3.0 )
-	mpi? ( virtual/mpi )
-	packages? ( dev-tcltk/tcllib )
-	tk? ( >=dev-lang/tk-8.4.18-r1:0= )
-	X? ( x11-libs/libX11 )"
-
-DEPEND="${RDEPEND}
-	doc? (
-		app-doc/doxygen[dot]
-		dev-texlive/texlive-latexextra
-		virtual/latex-base )"
-
-DOCS=( AUTHORS NEWS README ChangeLog )
-PATCHES=( "${FILESDIR}/${P}-cython-0.22.patch" )
-
-pkg_setup() {
-	use python && python-single-r1_pkg_setup
-}
-
-src_prepare() {
-	use cuda && cuda_src_prepare
-	autotools-utils_src_prepare
-}
-
-src_configure() {
-	myeconfargs=(
-		$(use_with fftw) \
-		$(use_with cuda) \
-		$(use_with python python-interface) \
-		$(use_with mpi) \
-		$(use_with tk) \
-		$(use_with X x)
-	)
-	CXX=$(usex mpi "mpic++" "$(tc-getCXX)") autotools-utils_src_configure
-	restore_config myconfig.hpp
-}
-
-src_compile() {
-	autotools-utils_src_compile
-	use doc && autotools-utils_src_compile doxygen
-	[[ ${PV} = 9999 ]] && use doc && autotools-utils_src_compile ug dg tutorials
-}
-
-src_install() {
-	local i
-
-	autotools-utils_src_install
-
-	insinto /usr/share/${PN}
-	doins ${AUTOTOOLS_BUILD_DIR}/myconfig-sample.hpp
-
-	save_config ${AUTOTOOLS_BUILD_DIR}/src/core/myconfig-final.hpp
-
-	if use doc; then
-		if [[ ${PV} = 9999 ]] ; then
-			newdoc "${AUTOTOOLS_BUILD_DIR}"/doc/dg/dg.pdf developer_guide.pdf
-			newdoc "${AUTOTOOLS_BUILD_DIR}"/doc/ug/ug.pdf user_guide.pdf
-			for i in "${AUTOTOOLS_BUILD_DIR}"/doc/tutorials/*/[0-9]*.pdf; do
-				newdoc "${i}" "tutorial_${i##*/}"
-			done
-		else
-			newdoc "${S}"/doc/ug/ug.pdf user_guide.pdf
-			for i in "${S}"/doc/tutorials/*/[0-9]*.pdf; do
-				newdoc "${i}" "tutorial_${i##*/}"
-			done
-		fi
-		dohtml -r "${AUTOTOOLS_BUILD_DIR}"/doc/doxygen/html/*
-	fi
-
-	if use examples; then
-		insinto /usr/share/${PN}/examples
-		doins -r samples/*
-	fi
-
-	if use packages; then
-		insinto /usr/share/${PN}/packages
-		doins -r packages/*
-	fi
-}
-
-pkg_postinst() {
-	echo
-	elog "Please read and cite:"
-	elog "ESPResSo, Comput. Phys. Commun. 174(9) ,704, 2006."
-	elog "http://dx.doi.org/10.1016/j.cpc.2005.10.005"
-	echo
-	elog "If you need more features, change"
-	elog "/etc/portage/savedconfig/${CATEGORY}/${PF}"
-	elog "and reemerge with USE=savedconfig"
-	echo
-	elog "For a full feature list see:"
-	elog "/usr/share/${PN}/myconfig-sample.h"
-	echo
-}

diff --git a/sci-physics/espresso/espresso-3.3.1.ebuild b/sci-physics/espresso/espresso-3.3.1.ebuild
deleted file mode 100644
index f33992f7523..00000000000
--- a/sci-physics/espresso/espresso-3.3.1.ebuild
+++ /dev/null
@@ -1,132 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit python-single-r1 savedconfig
-
-DESCRIPTION="Extensible Simulation Package for Research on Soft matter"
-HOMEPAGE="http://espressomd.org"
-
-if [[ ${PV} = 9999 ]]; then
-	EGIT_REPO_URI="git://github.com/espressomd/espresso.git https://github.com/espressomd/espresso.git"
-	EGIT_BRANCH="master"
-	inherit autotools git-r3
-	KEYWORDS=""
-else
-	SRC_URI="mirror://nongnu/${PN}md/${P}.tar.gz"
-	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
-fi
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE="X cuda doc examples +fftw mpi packages python test -tk"
-
-REQUIRED_USE="
-	python? ( ${PYTHON_REQUIRED_USE} )
-	tk? ( X )"
-
-RESTRICT="tk? ( test )"
-
-RDEPEND="
-	python? (
-		${PYTHON_DEPS}
-		dev-python/cython[${PYTHON_USEDEP}]
-		dev-python/numpy[${PYTHON_USEDEP}]
-	)
-	dev-lang/tcl:0=
-	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
-	fftw? ( sci-libs/fftw:3.0 )
-	mpi? ( virtual/mpi )
-	packages? ( dev-tcltk/tcllib )
-	tk? ( >=dev-lang/tk-8.4.18-r1:0= )
-	X? ( x11-libs/libX11 )"
-
-DEPEND="${RDEPEND}
-	doc? (
-		app-doc/doxygen[dot]
-		dev-texlive/texlive-latexextra
-		virtual/latex-base )"
-
-DOCS=( AUTHORS NEWS README ChangeLog )
-
-pkg_setup() {
-	use python && python-single-r1_pkg_setup
-}
-
-src_prepare() {
-	use cuda && cuda_src_prepare
-	default
-}
-
-src_configure() {
-	[[ ${PV} = 9999 ]] && eautoreconf
-	CXX=$(usex mpi "mpic++" "$(tc-getCXX)") econf \
-		$(use_with fftw) \
-		$(use_with cuda) \
-		$(use_with python python-interface) \
-		$(use_with mpi) \
-		$(use_with tk) \
-		$(use_with X x)
-	restore_config myconfig.hpp
-}
-
-src_compile() {
-	default
-	use doc && emake doxygen
-	[[ ${PV} = 9999 ]] && use doc && emake ug dg tutorials
-}
-
-src_install() {
-	local i
-
-	default
-
-	insinto /usr/share/${PN}
-	doins myconfig-sample.hpp
-
-	save_config src/core/myconfig-final.hpp
-
-	if use doc; then
-		if [[ ${PV} = 9999 ]] ; then
-			newdoc doc/dg/dg.pdf developer_guide.pdf
-			newdoc doc/ug/ug.pdf user_guide.pdf
-			for i in doc/tutorials/*/[0-9]*.pdf; do
-				newdoc "${i}" "tutorial_${i##*/}"
-			done
-		else
-			newdoc "${S}"/doc/ug/ug.pdf user_guide.pdf
-			for i in "${S}"/doc/tutorials/*/[0-9]*.pdf; do
-				newdoc "${i}" "tutorial_${i##*/}"
-			done
-		fi
-		dodoc -r doc/doxygen/html
-	fi
-
-	if use examples; then
-		insinto /usr/share/${PN}/examples
-		doins -r samples/*
-	fi
-
-	if use packages; then
-		insinto /usr/share/${PN}/packages
-		doins -r packages/*
-	fi
-}
-
-pkg_postinst() {
-	echo
-	elog "Please read and cite:"
-	elog "ESPResSo, Comput. Phys. Commun. 174(9) ,704, 2006."
-	elog "http://dx.doi.org/10.1016/j.cpc.2005.10.005"
-	echo
-	elog "If you need more features, change"
-	elog "/etc/portage/savedconfig/${CATEGORY}/${PF}"
-	elog "and reemerge with USE=savedconfig"
-	echo
-	elog "For a full feature list see:"
-	elog "/usr/share/${PN}/myconfig-sample.h"
-	echo
-}

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Michał Górny]

commit:     72a5dae9b0123719371a586f58ddddfafd03a70d
Author:     David Hicks <david <AT> hicks <DOT> id <DOT> au>
AuthorDate: Sat Jul 29 19:12:58 2017 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Sun Jul 30 10:04:30 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=72a5dae9

sci-physics/espresso: use HTTPS for GitHub and doc links

Package-Manager: Portage-2.3.6, Repoman-2.3.3

 sci-physics/espresso/espresso-4.0_pre20170228.ebuild | 4 ++--
 sci-physics/espresso/espresso-9999.ebuild            | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-physics/espresso/espresso-4.0_pre20170228.ebuild b/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
index ac559653418..6177a3fe03f 100644
--- a/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
+++ b/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
@@ -12,7 +12,7 @@ DESCRIPTION="Extensible Simulation Package for Research on Soft matter"
 HOMEPAGE="http://espressomd.org"
 
 if [[ ${PV} = 9999 ]]; then
-	EGIT_REPO_URI="git://github.com/espressomd/espresso.git https://github.com/espressomd/espresso.git"
+	EGIT_REPO_URI="https://github.com/${PN}md/${PN}.git"
 	EGIT_BRANCH="master"
 	inherit git-r3
 	KEYWORDS=""
@@ -105,7 +105,7 @@ pkg_postinst() {
 	echo
 	elog "Please read and cite:"
 	elog "ESPResSo, Comput. Phys. Commun. 174(9) ,704, 2006."
-	elog "http://dx.doi.org/10.1016/j.cpc.2005.10.005"
+	elog "https://dx.doi.org/10.1016/j.cpc.2005.10.005"
 	echo
 	elog "If you need more features, change"
 	elog "/etc/portage/savedconfig/${CATEGORY}/${PF}"

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index 2fa536f63bd..b841b4d4bc5 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -12,7 +12,7 @@ DESCRIPTION="Extensible Simulation Package for Research on Soft matter"
 HOMEPAGE="http://espressomd.org"
 
 if [[ ${PV} = 9999 ]]; then
-	EGIT_REPO_URI="git://github.com/espressomd/espresso.git https://github.com/espressomd/espresso.git"
+	EGIT_REPO_URI="https://github.com/${PN}md/${PN}.git"
 	EGIT_BRANCH="master"
 	inherit git-r3
 	KEYWORDS=""
@@ -118,7 +118,7 @@ pkg_postinst() {
 	echo
 	elog "Please read and cite:"
 	elog "ESPResSo, Comput. Phys. Commun. 174(9) ,704, 2006."
-	elog "http://dx.doi.org/10.1016/j.cpc.2005.10.005"
+	elog "https://dx.doi.org/10.1016/j.cpc.2005.10.005"
 	echo
 	elog "If you need more features, change"
 	elog "/etc/portage/savedconfig/${CATEGORY}/${PF}"

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Christoph Junghans]

commit:     87ad744e3f351ce03906019a1025fa52454125af
Author:     Christoph Junghans <junghans <AT> gentoo <DOT> org>
AuthorDate: Fri Sep  7 15:27:06 2018 +0000
Commit:     Christoph Junghans <junghans <AT> gentoo <DOT> org>
CommitDate: Fri Sep  7 15:27:30 2018 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=87ad744e

sci-physics/espresso: version bump

Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sci-physics/espresso/Manifest                      |  1 +
 ...{espresso-9999.ebuild => espresso-4.0.0.ebuild} | 41 +++++++---------------
 sci-physics/espresso/espresso-9999.ebuild          | 41 +++++++---------------
 sci-physics/espresso/metadata.xml                  |  1 -
 4 files changed, 25 insertions(+), 59 deletions(-)

diff --git a/sci-physics/espresso/Manifest b/sci-physics/espresso/Manifest
index d5d5ca9efc6..2b8aa0ed6e9 100644
--- a/sci-physics/espresso/Manifest
+++ b/sci-physics/espresso/Manifest
@@ -1 +1,2 @@
+DIST espresso-4.0.0.tar.gz 25767191 BLAKE2B 995678496fe35b957c4a5775f79f6656efbb5f717a43e90f8c5fa406aba7847cd34b00db3f313e5a7b0a11a96b521e8182bdd58129ad68ea4881c9496e3977e5 SHA512 53eb311e8bb7db5aed32dcd3adfd5e1c63e6ae42a22cea41844edfa857fee03ffd717c0739dd46a6cdf8ca7a4c4b0952a036b208fccc4e61de3f383910e7d019
 DIST espresso-4.0_pre20170228.tar.gz 23621395 BLAKE2B 6381e519c59986e50ff74fb3d81cd157f4761e1c46ea96b384487fd079b9c6f881dfa70df8f62e275fdd57bda6a4c714002630cebb02c232029186c3adbb692f SHA512 7d35648d447af3282a76d9d68cfe681734ec18794a38b09e0ae9233f63b62450c643643bcec999ea9c7d4ba070d4fc6f8dc64db8145f536ae017a67ff2d0e0e2

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-4.0.0.ebuild
similarity index 73%
copy from sci-physics/espresso/espresso-9999.ebuild
copy to sci-physics/espresso/espresso-4.0.0.ebuild
index b841b4d4bc5..953909c3dd7 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-4.0.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -13,35 +13,29 @@ HOMEPAGE="http://espressomd.org"
 
 if [[ ${PV} = 9999 ]]; then
 	EGIT_REPO_URI="https://github.com/${PN}md/${PN}.git"
-	EGIT_BRANCH="master"
+	EGIT_BRANCH="python"
 	inherit git-r3
 	KEYWORDS=""
 else
-	SRC_URI="mirror://nongnu/${PN}md/${P}.tar.gz"
+	SRC_URI="https://github.com/${PN}md/${PN}/releases/download/${PV}/${P}.tar.gz"
 	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
 fi
 
 LICENSE="GPL-3"
 SLOT="0"
-IUSE="cuda doc examples +fftw +hdf5 packages +python tcl test"
+IUSE="cuda doc examples +fftw +hdf5 test"
 
 REQUIRED_USE="
-	packages? ( tcl )
-	|| ( python tcl )
 	${PYTHON_REQUIRED_USE}"
 
 RDEPEND="
 	${PYTHON_DEPS}
-	python? (
-		>dev-python/cython-0.22[${PYTHON_USEDEP}]
-		dev-python/numpy[${PYTHON_USEDEP}]
-	)
-	tcl? ( dev-lang/tcl:0= )
+	>=dev-python/cython-0.26.1[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
 	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
 	fftw? ( sci-libs/fftw:3.0 )
 	dev-libs/boost:=[mpi]
-	hdf5? ( sci-libs/hdf5:= )
-	packages? ( dev-tcltk/tcllib )"
+	hdf5? ( sci-libs/hdf5:=[mpi] )"
 
 DEPEND="${RDEPEND}
 	doc? (
@@ -60,12 +54,10 @@ src_configure() {
 	mycmakeargs=(
 		-DWITH_CUDA=$(usex cuda)
 		-DPYTHON_EXECUTABLE="${PYTHON}"
-		-DWITH_PYTHON=$(usex python)
-		-DWITH_TCL=$(usex tcl)
 		-DWITH_TESTS=$(usex test)
-		-DWITH_SCAFACOS=ON
 		-DINSTALL_PYPRESSO=OFF
 		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw)
+		-DWITH_HDF5=$(usex hdf5)
 		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
 		-DCMAKE_SKIP_RPATH=YES
 		-DLIBDIR=$(get_libdir)
@@ -93,24 +85,15 @@ src_install() {
 		[[ ${PV} = 9999 ]] && docdir="${CMAKE_BUILD_DIR}"
 		newdoc "${docdir}"/doc/dg/dg.pdf developer_guide.pdf
 		newdoc "${docdir}"/doc/ug/ug.pdf user_guide.pdf
-		for j in $(usev python) $(usev tcl); do
-			for i in "${docdir}/doc/tutorials/${j}"/*/[0-9]*.pdf; do
-		  		newdoc "${i}" "${j}_tutorial_${i##*/}"
-			done
+		for i in "${docdir}/doc/tutorials/python"/*/[0-9]*.pdf; do
+			newdoc "${i}" "tutorial_${i##*/}"
 		done
 		dodoc -r ${CMAKE_BUILD_DIR}/doc/doxygen/html
 	fi
 
 	if use examples; then
-		for i in $(usev python) $(usev tcl); do
-			insinto "/usr/share/${PN}/examples/${i}"
-			doins -r samples/${i}/.
-		done
-	fi
-
-	if use packages; then
-		insinto /usr/share/${PN}/packages
-		doins -r packages/*
+		insinto "/usr/share/${PN}/examples/python"
+		doins -r samples/${i}/.
 	fi
 }
 

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index b841b4d4bc5..953909c3dd7 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -13,35 +13,29 @@ HOMEPAGE="http://espressomd.org"
 
 if [[ ${PV} = 9999 ]]; then
 	EGIT_REPO_URI="https://github.com/${PN}md/${PN}.git"
-	EGIT_BRANCH="master"
+	EGIT_BRANCH="python"
 	inherit git-r3
 	KEYWORDS=""
 else
-	SRC_URI="mirror://nongnu/${PN}md/${P}.tar.gz"
+	SRC_URI="https://github.com/${PN}md/${PN}/releases/download/${PV}/${P}.tar.gz"
 	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
 fi
 
 LICENSE="GPL-3"
 SLOT="0"
-IUSE="cuda doc examples +fftw +hdf5 packages +python tcl test"
+IUSE="cuda doc examples +fftw +hdf5 test"
 
 REQUIRED_USE="
-	packages? ( tcl )
-	|| ( python tcl )
 	${PYTHON_REQUIRED_USE}"
 
 RDEPEND="
 	${PYTHON_DEPS}
-	python? (
-		>dev-python/cython-0.22[${PYTHON_USEDEP}]
-		dev-python/numpy[${PYTHON_USEDEP}]
-	)
-	tcl? ( dev-lang/tcl:0= )
+	>=dev-python/cython-0.26.1[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
 	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
 	fftw? ( sci-libs/fftw:3.0 )
 	dev-libs/boost:=[mpi]
-	hdf5? ( sci-libs/hdf5:= )
-	packages? ( dev-tcltk/tcllib )"
+	hdf5? ( sci-libs/hdf5:=[mpi] )"
 
 DEPEND="${RDEPEND}
 	doc? (
@@ -60,12 +54,10 @@ src_configure() {
 	mycmakeargs=(
 		-DWITH_CUDA=$(usex cuda)
 		-DPYTHON_EXECUTABLE="${PYTHON}"
-		-DWITH_PYTHON=$(usex python)
-		-DWITH_TCL=$(usex tcl)
 		-DWITH_TESTS=$(usex test)
-		-DWITH_SCAFACOS=ON
 		-DINSTALL_PYPRESSO=OFF
 		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw)
+		-DWITH_HDF5=$(usex hdf5)
 		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
 		-DCMAKE_SKIP_RPATH=YES
 		-DLIBDIR=$(get_libdir)
@@ -93,24 +85,15 @@ src_install() {
 		[[ ${PV} = 9999 ]] && docdir="${CMAKE_BUILD_DIR}"
 		newdoc "${docdir}"/doc/dg/dg.pdf developer_guide.pdf
 		newdoc "${docdir}"/doc/ug/ug.pdf user_guide.pdf
-		for j in $(usev python) $(usev tcl); do
-			for i in "${docdir}/doc/tutorials/${j}"/*/[0-9]*.pdf; do
-		  		newdoc "${i}" "${j}_tutorial_${i##*/}"
-			done
+		for i in "${docdir}/doc/tutorials/python"/*/[0-9]*.pdf; do
+			newdoc "${i}" "tutorial_${i##*/}"
 		done
 		dodoc -r ${CMAKE_BUILD_DIR}/doc/doxygen/html
 	fi
 
 	if use examples; then
-		for i in $(usev python) $(usev tcl); do
-			insinto "/usr/share/${PN}/examples/${i}"
-			doins -r samples/${i}/.
-		done
-	fi
-
-	if use packages; then
-		insinto /usr/share/${PN}/packages
-		doins -r packages/*
+		insinto "/usr/share/${PN}/examples/python"
+		doins -r samples/${i}/.
 	fi
 }
 

diff --git a/sci-physics/espresso/metadata.xml b/sci-physics/espresso/metadata.xml
index f162adc22dc..87ef8dd6f08 100644
--- a/sci-physics/espresso/metadata.xml
+++ b/sci-physics/espresso/metadata.xml
@@ -12,7 +12,6 @@
   <use>
     <flag name="cuda">Enable cuda support</flag>
     <flag name="examples">Installs the examples</flag>
-    <flag name="packages">Installs extra TCL subpackages</flag>
   </use>
   <upstream>
     <remote-id type="github">espressomd/espresso</remote-id>

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Michał Górny]

commit:     c366d2e26eebaecef660b88afb6f76b4a3ef721c
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Thu Jan 16 06:58:28 2020 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Thu Jan 16 07:02:54 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c366d2e2

sci-physics/espresso: Remove Python 2

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 sci-physics/espresso/espresso-4.0.0-r1.ebuild        | 2 +-
 sci-physics/espresso/espresso-4.0_pre20170228.ebuild | 2 +-
 sci-physics/espresso/espresso-9999.ebuild            | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-physics/espresso/espresso-4.0.0-r1.ebuild b/sci-physics/espresso/espresso-4.0.0-r1.ebuild
index b969b400a5e..00b53caa2ef 100644
--- a/sci-physics/espresso/espresso-4.0.0-r1.ebuild
+++ b/sci-physics/espresso/espresso-4.0.0-r1.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=6
 
-PYTHON_COMPAT=( python{2_7,3_6} )
+PYTHON_COMPAT=( python3_6 )
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
 inherit cmake-utils python-single-r1 savedconfig

diff --git a/sci-physics/espresso/espresso-4.0_pre20170228.ebuild b/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
index 4d969a356a2..5755eba6cdf 100644
--- a/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
+++ b/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=6
 
-PYTHON_COMPAT=( python{2_7,3_6} )
+PYTHON_COMPAT=( python3_6 )
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
 inherit cmake-utils python-single-r1 savedconfig

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index 51c609793c3..b9d14d3937e 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=6
 
-PYTHON_COMPAT=( python{2_7,3_6} )
+PYTHON_COMPAT=( python3_6 )
 CMAKE_MAKEFILE_GENERATOR="ninja"
 
 inherit cmake-utils python-single-r1 savedconfig

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Michał Górny]

commit:     588795db94366812e38da84d817d8a00bd7835ed
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Fri Feb  7 19:10:07 2020 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Sun Feb  9 16:35:36 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=588795db

sci-physics/espresso: Switch to PYTHON_MULTI_USEDEP API

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 .../espresso/{espresso-4.0.0-r1.ebuild => espresso-4.0.0-r2.ebuild} | 6 ++++--
 sci-physics/espresso/espresso-4.0_pre20170228.ebuild                | 6 ++++--
 sci-physics/espresso/espresso-9999.ebuild                           | 6 ++++--
 3 files changed, 12 insertions(+), 6 deletions(-)

diff --git a/sci-physics/espresso/espresso-4.0.0-r1.ebuild b/sci-physics/espresso/espresso-4.0.0-r2.ebuild
similarity index 95%
rename from sci-physics/espresso/espresso-4.0.0-r1.ebuild
rename to sci-physics/espresso/espresso-4.0.0-r2.ebuild
index 00b53caa2ef..0afbf393e9a 100644
--- a/sci-physics/espresso/espresso-4.0.0-r1.ebuild
+++ b/sci-physics/espresso/espresso-4.0.0-r2.ebuild
@@ -31,8 +31,10 @@ REQUIRED_USE="
 
 RDEPEND="
 	${PYTHON_DEPS}
-	>=dev-python/cython-0.26.1[${PYTHON_USEDEP}]
-	dev-python/numpy[${PYTHON_USEDEP}]
+	$(python_gen_cond_dep '
+		>=dev-python/cython-0.26.1[${PYTHON_MULTI_USEDEP}]
+		dev-python/numpy[${PYTHON_MULTI_USEDEP}]
+	')
 	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
 	fftw? ( sci-libs/fftw:3.0 )
 	dev-libs/boost:=[mpi]

diff --git a/sci-physics/espresso/espresso-4.0_pre20170228.ebuild b/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
index 5755eba6cdf..e7c540b1629 100644
--- a/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
+++ b/sci-physics/espresso/espresso-4.0_pre20170228.ebuild
@@ -33,8 +33,10 @@ REQUIRED_USE="
 
 RDEPEND="
 	${PYTHON_DEPS}
-	>dev-python/cython-0.22[${PYTHON_USEDEP}]
-	dev-python/numpy[${PYTHON_USEDEP}]
+	$(python_gen_cond_dep '
+		>dev-python/cython-0.22[${PYTHON_MULTI_USEDEP}]
+		dev-python/numpy[${PYTHON_MULTI_USEDEP}]
+	')
 	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
 	fftw? ( sci-libs/fftw:3.0 )
 	dev-libs/boost:=[mpi]

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index b9d14d3937e..fcc6fbc9926 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -31,8 +31,10 @@ REQUIRED_USE="
 
 RDEPEND="
 	${PYTHON_DEPS}
-	>=dev-python/cython-0.26.1[${PYTHON_USEDEP}]
-	dev-python/numpy[${PYTHON_USEDEP}]
+	$(python_gen_cond_dep '
+		>=dev-python/cython-0.26.1[${PYTHON_MULTI_USEDEP}]
+		dev-python/numpy[${PYTHON_MULTI_USEDEP}]
+	')
 	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
 	fftw? ( sci-libs/fftw:3.0 )
 	dev-libs/boost:=[mpi]

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Christoph Junghans]

commit:     93533be3232554ddc1b0546ea1f1bde62c348bc7
Author:     Christoph Junghans <junghans <AT> gentoo <DOT> org>
AuthorDate: Sun Aug 16 15:21:58 2020 +0000
Commit:     Christoph Junghans <junghans <AT> gentoo <DOT> org>
CommitDate: Sun Aug 16 15:22:19 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=93533be3

sci-physics/espresso: version bump

Closes: https://bugs.gentoo.org/737416
Package-Manager: Portage-2.3.103, Repoman-2.3.23
Signed-off-by: Christoph Junghans <junghans <AT> gentoo.org>

 sci-physics/espresso/Manifest                      |  1 +
 ...{espresso-9999.ebuild => espresso-4.1.3.ebuild} | 31 +++++++++++-----------
 sci-physics/espresso/espresso-9999.ebuild          | 31 +++++++++++-----------
 sci-physics/espresso/metadata.xml                  |  4 ---
 4 files changed, 33 insertions(+), 34 deletions(-)

diff --git a/sci-physics/espresso/Manifest b/sci-physics/espresso/Manifest
index 2b8aa0ed6e9..a4941b7d188 100644
--- a/sci-physics/espresso/Manifest
+++ b/sci-physics/espresso/Manifest
@@ -1,2 +1,3 @@
 DIST espresso-4.0.0.tar.gz 25767191 BLAKE2B 995678496fe35b957c4a5775f79f6656efbb5f717a43e90f8c5fa406aba7847cd34b00db3f313e5a7b0a11a96b521e8182bdd58129ad68ea4881c9496e3977e5 SHA512 53eb311e8bb7db5aed32dcd3adfd5e1c63e6ae42a22cea41844edfa857fee03ffd717c0739dd46a6cdf8ca7a4c4b0952a036b208fccc4e61de3f383910e7d019
 DIST espresso-4.0_pre20170228.tar.gz 23621395 BLAKE2B 6381e519c59986e50ff74fb3d81cd157f4761e1c46ea96b384487fd079b9c6f881dfa70df8f62e275fdd57bda6a4c714002630cebb02c232029186c3adbb692f SHA512 7d35648d447af3282a76d9d68cfe681734ec18794a38b09e0ae9233f63b62450c643643bcec999ea9c7d4ba070d4fc6f8dc64db8145f536ae017a67ff2d0e0e2
+DIST espresso-4.1.3.tar.gz 16947336 BLAKE2B 14d3513eda87f62a8473a0cac0c273b3590bf78ed48b96e76d10c106713f7bbd7d37de951bd3d9210062b34c02bd83a68f3aaf1ca8215ed1dcde590e4e99b113 SHA512 1fe82683eddb7bfd9bae6e446b0f42a50087d755995963905cd419473ad17b204f20049d0cf4af9264898dd6fee36f02744b38fa45cd0e33086374cf2aebd934

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-4.1.3.ebuild
similarity index 79%
copy from sci-physics/espresso/espresso-9999.ebuild
copy to sci-physics/espresso/espresso-4.1.3.ebuild
index fcc6fbc9926..ef5f6578edc 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-4.1.3.ebuild
@@ -1,12 +1,12 @@
 # Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-PYTHON_COMPAT=( python3_6 )
-CMAKE_MAKEFILE_GENERATOR="ninja"
+PYTHON_COMPAT=( python3_{6,7,8,9} )
+CMAKE_MAKEFILE_GENERATOR="emake"
 
-inherit cmake-utils python-single-r1 savedconfig
+inherit cmake python-single-r1 savedconfig
 
 DESCRIPTION="Extensible Simulation Package for Research on Soft matter"
 HOMEPAGE="http://espressomd.org"
@@ -48,9 +48,11 @@ DEPEND="${RDEPEND}
 
 DOCS=( AUTHORS NEWS README ChangeLog )
 
+S="${WORKDIR}/${PN}"
+
 src_prepare() {
 	use cuda && cuda_src_prepare
-	cmake-utils_src_prepare
+	cmake_src_prepare
 }
 
 src_configure() {
@@ -63,35 +65,34 @@ src_configure() {
 		-DWITH_HDF5=$(usex hdf5)
 		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
 		-DCMAKE_SKIP_RPATH=YES
-		-DLIBDIR=$(get_libdir)
 	)
-	cmake-utils_src_configure
+	cmake_src_configure
 }
 
 src_compile() {
-	cmake-utils_src_compile
-	use doc && cmake-utils_src_make doxygen
-	[[ ${PV} = 9999 ]] && use doc && cmake-utils_src_make ug dg tutorials
+	cmake_src_compile
+	use doc && cmake_build doxygen
+	[[ ${PV} = 9999 ]] && use doc && cmake_build ug dg tutorials
 }
 
 src_install() {
 	local i docdir="${S}"
 
-	cmake-utils_src_install
+	cmake_src_install
 
 	insinto /usr/share/${PN}/
-	doins ${CMAKE_BUILD_DIR}/myconfig-sample.hpp
+	doins "${BUILD_DIR}/myconfig-sample.hpp"
 
-	save_config ${CMAKE_BUILD_DIR}/src/core/myconfig-final.hpp
+	save_config "${BUILD_DIR}/src/config/myconfig-final.hpp"
 
 	if use doc; then
-		[[ ${PV} = 9999 ]] && docdir="${CMAKE_BUILD_DIR}"
+		[[ ${PV} = 9999 ]] && docdir="${BUILD_DIR}"
 		newdoc "${docdir}"/doc/dg/dg.pdf developer_guide.pdf
 		newdoc "${docdir}"/doc/ug/ug.pdf user_guide.pdf
 		for i in "${docdir}/doc/tutorials/python"/*/[0-9]*.pdf; do
 			newdoc "${i}" "tutorial_${i##*/}"
 		done
-		dodoc -r ${CMAKE_BUILD_DIR}/doc/doxygen/html
+		dodoc -r "${BUILD_DIR}/doc/doxygen/html"
 	fi
 
 	if use examples; then

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index fcc6fbc9926..ef5f6578edc 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -1,12 +1,12 @@
 # Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-PYTHON_COMPAT=( python3_6 )
-CMAKE_MAKEFILE_GENERATOR="ninja"
+PYTHON_COMPAT=( python3_{6,7,8,9} )
+CMAKE_MAKEFILE_GENERATOR="emake"
 
-inherit cmake-utils python-single-r1 savedconfig
+inherit cmake python-single-r1 savedconfig
 
 DESCRIPTION="Extensible Simulation Package for Research on Soft matter"
 HOMEPAGE="http://espressomd.org"
@@ -48,9 +48,11 @@ DEPEND="${RDEPEND}
 
 DOCS=( AUTHORS NEWS README ChangeLog )
 
+S="${WORKDIR}/${PN}"
+
 src_prepare() {
 	use cuda && cuda_src_prepare
-	cmake-utils_src_prepare
+	cmake_src_prepare
 }
 
 src_configure() {
@@ -63,35 +65,34 @@ src_configure() {
 		-DWITH_HDF5=$(usex hdf5)
 		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
 		-DCMAKE_SKIP_RPATH=YES
-		-DLIBDIR=$(get_libdir)
 	)
-	cmake-utils_src_configure
+	cmake_src_configure
 }
 
 src_compile() {
-	cmake-utils_src_compile
-	use doc && cmake-utils_src_make doxygen
-	[[ ${PV} = 9999 ]] && use doc && cmake-utils_src_make ug dg tutorials
+	cmake_src_compile
+	use doc && cmake_build doxygen
+	[[ ${PV} = 9999 ]] && use doc && cmake_build ug dg tutorials
 }
 
 src_install() {
 	local i docdir="${S}"
 
-	cmake-utils_src_install
+	cmake_src_install
 
 	insinto /usr/share/${PN}/
-	doins ${CMAKE_BUILD_DIR}/myconfig-sample.hpp
+	doins "${BUILD_DIR}/myconfig-sample.hpp"
 
-	save_config ${CMAKE_BUILD_DIR}/src/core/myconfig-final.hpp
+	save_config "${BUILD_DIR}/src/config/myconfig-final.hpp"
 
 	if use doc; then
-		[[ ${PV} = 9999 ]] && docdir="${CMAKE_BUILD_DIR}"
+		[[ ${PV} = 9999 ]] && docdir="${BUILD_DIR}"
 		newdoc "${docdir}"/doc/dg/dg.pdf developer_guide.pdf
 		newdoc "${docdir}"/doc/ug/ug.pdf user_guide.pdf
 		for i in "${docdir}/doc/tutorials/python"/*/[0-9]*.pdf; do
 			newdoc "${i}" "tutorial_${i##*/}"
 		done
-		dodoc -r ${CMAKE_BUILD_DIR}/doc/doxygen/html
+		dodoc -r "${BUILD_DIR}/doc/doxygen/html"
 	fi
 
 	if use examples; then

diff --git a/sci-physics/espresso/metadata.xml b/sci-physics/espresso/metadata.xml
index 87ef8dd6f08..37615e72f9b 100644
--- a/sci-physics/espresso/metadata.xml
+++ b/sci-physics/espresso/metadata.xml
@@ -1,10 +1,6 @@
 <?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-  <maintainer type="person">
-    <email>junghans@gentoo.org</email>
-    <name>Christoph Junghans</name>
-  </maintainer>
   <maintainer type="project">
     <email>sci-physics@gentoo.org</email>
     <name>Gentoo Physics Project</name>

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Fabian Groffen]

commit:     a90ac558bb4731140fd89d9f8d309d05775ba765
Author:     Fabian Groffen <grobian <AT> gentoo <DOT> org>
AuthorDate: Wed Jan  6 15:19:35 2021 +0000
Commit:     Fabian Groffen <grobian <AT> gentoo <DOT> org>
CommitDate: Wed Jan  6 15:19:35 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a90ac558

sci-physics/espresso: drop x86-macos

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Fabian Groffen <grobian <AT> gentoo.org>

 sci-physics/espresso/espresso-4.1.3.ebuild | 4 ++--
 sci-physics/espresso/espresso-9999.ebuild  | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-physics/espresso/espresso-4.1.3.ebuild b/sci-physics/espresso/espresso-4.1.3.ebuild
index ef5f6578edc..926982e17eb 100644
--- a/sci-physics/espresso/espresso-4.1.3.ebuild
+++ b/sci-physics/espresso/espresso-4.1.3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -18,7 +18,7 @@ if [[ ${PV} = 9999 ]]; then
 	KEYWORDS=""
 else
 	SRC_URI="https://github.com/${PN}md/${PN}/releases/download/${PV}/${P}.tar.gz"
-	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
+	KEYWORDS="~amd64 ~x86 ~amd64-linux"
 fi
 
 LICENSE="GPL-3"

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index ef5f6578edc..926982e17eb 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -18,7 +18,7 @@ if [[ ${PV} = 9999 ]]; then
 	KEYWORDS=""
 else
 	SRC_URI="https://github.com/${PN}md/${PN}/releases/download/${PV}/${P}.tar.gz"
-	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
+	KEYWORDS="~amd64 ~x86 ~amd64-linux"
 fi
 
 LICENSE="GPL-3"

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Sam James]

commit:     efc046af4b3479a93b8c237dce7a78c9115fbfbc
Author:     Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 14 23:22:11 2021 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Mon Feb 15 00:31:58 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=efc046af

sci-physics/espresso: fix double KEYWORDS

Double KEYWORDS lines break tools like ekeyword and Nattka.
As per PMS, blank/empty KEYWORDS is implied by not defining
the variable.

See: https://projects.gentoo.org/qa/policy-guide/ebuild-format.html#pg0105
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Sam James <sam <AT> gentoo.org>

 sci-physics/espresso/espresso-4.1.3.ebuild | 1 -
 sci-physics/espresso/espresso-9999.ebuild  | 1 -
 2 files changed, 2 deletions(-)

diff --git a/sci-physics/espresso/espresso-4.1.3.ebuild b/sci-physics/espresso/espresso-4.1.3.ebuild
index 66c2b9a4c69..1ef336f2ab4 100644
--- a/sci-physics/espresso/espresso-4.1.3.ebuild
+++ b/sci-physics/espresso/espresso-4.1.3.ebuild
@@ -15,7 +15,6 @@ if [[ ${PV} = 9999 ]]; then
 	EGIT_REPO_URI="https://github.com/${PN}md/${PN}.git"
 	EGIT_BRANCH="python"
 	inherit git-r3
-	KEYWORDS=""
 else
 	SRC_URI="https://github.com/${PN}md/${PN}/releases/download/${PV}/${P}.tar.gz"
 	KEYWORDS="~amd64 ~x86 ~amd64-linux"

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index 66c2b9a4c69..1ef336f2ab4 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -15,7 +15,6 @@ if [[ ${PV} = 9999 ]]; then
 	EGIT_REPO_URI="https://github.com/${PN}md/${PN}.git"
 	EGIT_BRANCH="python"
 	inherit git-r3
-	KEYWORDS=""
 else
 	SRC_URI="https://github.com/${PN}md/${PN}/releases/download/${PV}/${P}.tar.gz"
 	KEYWORDS="~amd64 ~x86 ~amd64-linux"

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[David Seifert]

commit:     5d48bc3167868ca93664326e445f8ac58650a1fd
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Jul 17 18:17:08 2021 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Jul 17 18:17:08 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5d48bc31

sci-physics/espresso: PYTHON_MULTI_USEDEP -> PYTHON_USEDEP

Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-physics/espresso/espresso-4.1.3.ebuild | 6 +++---
 sci-physics/espresso/espresso-9999.ebuild  | 6 +++---
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/sci-physics/espresso/espresso-4.1.3.ebuild b/sci-physics/espresso/espresso-4.1.3.ebuild
index a60bb434ef8..19e9be04e85 100644
--- a/sci-physics/espresso/espresso-4.1.3.ebuild
+++ b/sci-physics/espresso/espresso-4.1.3.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{7,8,9} )
+PYTHON_COMPAT=( python3_{8,9} )
 CMAKE_MAKEFILE_GENERATOR="emake"
 
 inherit cmake cuda python-single-r1 savedconfig
@@ -31,8 +31,8 @@ REQUIRED_USE="
 RDEPEND="
 	${PYTHON_DEPS}
 	$(python_gen_cond_dep '
-		>=dev-python/cython-0.26.1[${PYTHON_MULTI_USEDEP}]
-		dev-python/numpy[${PYTHON_MULTI_USEDEP}]
+		>=dev-python/cython-0.26.1[${PYTHON_USEDEP}]
+		dev-python/numpy[${PYTHON_USEDEP}]
 	')
 	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
 	fftw? ( sci-libs/fftw:3.0 )

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index a60bb434ef8..19e9be04e85 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{7,8,9} )
+PYTHON_COMPAT=( python3_{8,9} )
 CMAKE_MAKEFILE_GENERATOR="emake"
 
 inherit cmake cuda python-single-r1 savedconfig
@@ -31,8 +31,8 @@ REQUIRED_USE="
 RDEPEND="
 	${PYTHON_DEPS}
 	$(python_gen_cond_dep '
-		>=dev-python/cython-0.26.1[${PYTHON_MULTI_USEDEP}]
-		dev-python/numpy[${PYTHON_MULTI_USEDEP}]
+		>=dev-python/cython-0.26.1[${PYTHON_USEDEP}]
+		dev-python/numpy[${PYTHON_USEDEP}]
 	')
 	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
 	fftw? ( sci-libs/fftw:3.0 )

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Eli Schwartz]

commit:     74d3bc3916a6fefac6f5a1f810b855b7046696bb
Author:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Wed Sep  3 05:32:25 2025 +0000
Commit:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Mon Sep  8 17:21:19 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=74d3bc39

sci-physics/espresso: fix multitude of extremely severe runtime / test issues

At the heart of this issue is that tests were disabled, via a wholly
bogus and clearly unresearched claim that a dep isn't packaged. No such
dep exists -- the "dep" is a source code file inside the package
sources. It "does not exist" because cmake does not build tests when
running ctest. This is evidenced by loads of other C++ tests not running
at all because... they weren't built.

To fix this, patch the cmake files to expose a target for building
tests.

Next step: for absolutely unfathomable reasons, the package set up
-DCMAKE_SKIP_RPATH=YES, which exists solely to break the software into a
million pieces, as libraries are installed to site-packages and none of
the code can find the dependencies. This cmake option is seriously
advanced low-level debugging, using it at all is a huge red flag.

And the cherry on top is that using it also breaks running tests! Tests
cannot run if test programs cannot find the just-built libraries which
aren't in ld.so.conf. To work around *this*, the ebuild -- in the same
commit adding the bogus RESTRICT=test -- added an LD_PRELOAD of one out
of the four ${BUILD_DIR} libraries loaded by test code. This is *totally
insane*, as the correct solution is either rpath or LD_LIBRARY_PATH, and
LD_PRELOAD injects code into programs such as `mkdir -p "${BUILD_DIR}"`
which in case it wasn't completely obvious, DOES NOT WORK.
```
 *   environment, line  276:  Called die
 * The specific snippet of code:
*** The MPI_Type_free() function was called before MPI_INIT was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[localhost:00084] Local abort before MPI_INIT completed completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
*** The MPI_Type_free() function was called before MPI_INIT was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[localhost:00085] Local abort before MPI_INIT completed completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!
 *       mkdir -p "${BUILD_DIR}" || die
```

Again, there was no reason to ever assume this could work, and the fact
that it was even possible to think it might be a good idea should have
been worrying: it implied that the installed software might not run
without injecting libraries. Indeed, it didn't run.

Since we are massively renovating the testsuite already, add a couple
needed bdeps, some backport patches fixing issues with the tests, and
skip the final remaining test failures. Additionally, it seems numpy
needs to be pinned to 1.* as indicated by some test fails.

Bug: https://github.com/espressomd/espresso/issues/5166
Bug: https://bugs.gentoo.org/811186
Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>

 sci-physics/espresso/espresso-4.2.0.ebuild | 44 ++++++++++++++++++++++++++----
 1 file changed, 38 insertions(+), 6 deletions(-)

diff --git a/sci-physics/espresso/espresso-4.2.0.ebuild b/sci-physics/espresso/espresso-4.2.0.ebuild
index e5a5919f291c..9ccffbce0805 100644
--- a/sci-physics/espresso/espresso-4.2.0.ebuild
+++ b/sci-physics/espresso/espresso-4.2.0.ebuild
@@ -24,9 +24,6 @@ LICENSE="GPL-3"
 SLOT="0"
 IUSE="cuda doc examples +fftw +hdf5 test"
 
-# unittest_decorators not packaged
-RESTRICT="test"
-
 REQUIRED_USE="
 	${PYTHON_REQUIRED_USE}"
 
@@ -34,7 +31,7 @@ RDEPEND="
 	${PYTHON_DEPS}
 	$(python_gen_cond_dep '
 		>=dev-python/cython-0.26.1[${PYTHON_USEDEP}]
-		dev-python/numpy[${PYTHON_USEDEP}]
+		<dev-python/numpy-2[${PYTHON_USEDEP}]
 	')
 	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
 	fftw? ( sci-libs/fftw:3.0 )
@@ -48,6 +45,11 @@ DEPEND="${RDEPEND}
 		dev-texlive/texlive-latexextra
 		virtual/latex-base
 	)
+	test? (
+		$(python_gen_cond_dep '
+			dev-python/scipy[${PYTHON_USEDEP}]
+		')
+	)
 "
 
 DOCS=( AUTHORS NEWS Readme.md ChangeLog )
@@ -57,11 +59,19 @@ PATCHES=(
 	# https://github.com/espressomd/espresso/pull/4655
 	# boost 1.81
 	"${FILESDIR}"/${P}-boost1.81.patch
+	"${FILESDIR}"/0001-allow-building-test-deps-without-running-ctest-indir.patch
+	"${FILESDIR}"/${P}-test-deprecations.patch
+	"${FILESDIR}"/${P}-test-rounding.patch
 )
 
 src_prepare() {
 	use cuda && cuda_src_prepare
 	cmake_src_prepare
+
+	# These produce tests that aren't run by "make check", but ctest picks
+	# them up by default, against upstream's intention.
+	cd testsuite || die
+	cmake_comment_add_subdirectory cmake scripts
 }
 
 src_configure() {
@@ -73,7 +83,6 @@ src_configure() {
 		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw)
 		-DWITH_HDF5=$(usex hdf5)
 		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
-		-DCMAKE_SKIP_RPATH=YES
 	)
 	cmake_src_configure
 }
@@ -85,7 +94,30 @@ src_compile() {
 }
 
 src_test() {
-	LD_PRELOAD="${BUILD_DIR}/src/core/Espresso_core.so" cmake_src_test
+	CMAKE_SKIP_TESTS=(
+		# These 13 tests fail with
+		# "The MPI_Type_free() function was called before MPI_INIT was invoked."
+		#
+		# I do not know why. But, we didn't used to run any tests at all,
+		# so, baby steps.
+		SingleReaction_test
+		reaction_methods_utils_test
+		rotation_test
+		grid_test
+		Lattice_test
+		lb_exceptions
+		thermostats_test
+		bonded_interactions_map_test
+		ObjectHandle_test
+		AutoParameters_test
+		Accumulators_test
+		Constraints_test
+		Actors_test
+	)
+
+	# testsuite uses exclude_from_all, and lists all targets as deps for their custom rule
+	cmake_build check
+	cmake_src_test
 }
 
 src_install() {

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Eli Schwartz]

commit:     765e3354b7e89fbd8364bd8fdc02fc98fdb3cf8c
Author:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Thu Sep  4 06:34:24 2025 +0000
Commit:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Mon Sep  8 17:21:11 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=765e3354

sci-physics/espresso: stop forcing cmake makefile generator

It was added in 4.1.3 alongside an upstream PR fixing it. But the live
ebuild wasn't updated days later when the fix was merged, so it survived
for half a decade despite being long unnecessary (and slow).

Bug: https://github.com/espressomd/espresso/issues/3861
Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>

 sci-physics/espresso/espresso-4.2.0.ebuild | 1 -
 sci-physics/espresso/espresso-9999.ebuild  | 1 -
 2 files changed, 2 deletions(-)

diff --git a/sci-physics/espresso/espresso-4.2.0.ebuild b/sci-physics/espresso/espresso-4.2.0.ebuild
index a01671812af7..e5a5919f291c 100644
--- a/sci-physics/espresso/espresso-4.2.0.ebuild
+++ b/sci-physics/espresso/espresso-4.2.0.ebuild
@@ -4,7 +4,6 @@
 EAPI=7
 
 PYTHON_COMPAT=( python3_{9..11} )
-CMAKE_MAKEFILE_GENERATOR="emake"
 
 inherit cmake cuda python-single-r1 savedconfig
 

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index 9eb97391dd4c..4288c6995c8f 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -4,7 +4,6 @@
 EAPI=7
 
 PYTHON_COMPAT=( python3_{9..11} )
-CMAKE_MAKEFILE_GENERATOR="emake"
 
 inherit cmake cuda python-single-r1 savedconfig
 

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Eli Schwartz]

commit:     6293165a1afe11606450c6938be3eee97a7d4bf0
Author:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Thu Sep  4 00:57:36 2025 +0000
Commit:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Mon Sep  8 17:22:23 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6293165a

sci-physics/espresso: enable py3.12

Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>

 sci-physics/espresso/espresso-4.2.0.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-physics/espresso/espresso-4.2.0.ebuild b/sci-physics/espresso/espresso-4.2.0.ebuild
index 9ccffbce0805..2017daccad09 100644
--- a/sci-physics/espresso/espresso-4.2.0.ebuild
+++ b/sci-physics/espresso/espresso-4.2.0.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{9..12} )
 
 inherit cmake cuda python-single-r1 savedconfig
 

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Eli Schwartz]

commit:     342877170224f32a66341ed262dfec3c20fc990d
Author:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Tue Sep  9 18:02:37 2025 +0000
Commit:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Tue Sep  9 20:52:39 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=34287717

sci-physics/espresso: fix USE="-test" restrict

Fixes: 74d3bc3916a6fefac6f5a1f810b855b7046696bb
Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>

 sci-physics/espresso/espresso-4.2.0.ebuild | 1 +
 1 file changed, 1 insertion(+)

diff --git a/sci-physics/espresso/espresso-4.2.0.ebuild b/sci-physics/espresso/espresso-4.2.0.ebuild
index 2017daccad09..73c846fd7f1a 100644
--- a/sci-physics/espresso/espresso-4.2.0.ebuild
+++ b/sci-physics/espresso/espresso-4.2.0.ebuild
@@ -23,6 +23,7 @@ S="${WORKDIR}/${PN}"
 LICENSE="GPL-3"
 SLOT="0"
 IUSE="cuda doc examples +fftw +hdf5 test"
+RESTRICT="!test? ( test )"
 
 REQUIRED_USE="
 	${PYTHON_REQUIRED_USE}"

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Eli Schwartz]

commit:     2999a4ed11a7d01eecdf64b0321fcfcbeb924abb
Author:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Tue Sep  9 05:09:45 2025 +0000
Commit:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Tue Sep  9 20:52:39 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2999a4ed

sci-physics/espresso: add 4.2.2

Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>

 sci-physics/espresso/Manifest              |   1 +
 sci-physics/espresso/espresso-4.2.2.ebuild | 154 +++++++++++++++++++++++++++++
 2 files changed, 155 insertions(+)

diff --git a/sci-physics/espresso/Manifest b/sci-physics/espresso/Manifest
index 8fc3c5ca8d45..d69858c4c98e 100644
--- a/sci-physics/espresso/Manifest
+++ b/sci-physics/espresso/Manifest
@@ -1 +1,2 @@
 DIST espresso-4.2.0.tar.gz 14000445 BLAKE2B 79de0e364cd932e534b0e1ee9433ae90e4deeb1ade262aa6877a30c8656f03155ca77b8feafdd5607f83e36ee4f47ad7ec28be353bc3358216a9c9f8c0902323 SHA512 b80afb1bef57911fd79b88378a5b2e31b07a18d415fe17fcd5ed28fb448eeca5922f98af8df42117e9e869645765d55ecfb3aae615fa6a53c915f7d8a63081c5
+DIST espresso-4.2.2.tar.gz 13463564 BLAKE2B c67d41f975c16bae701602a410e10ec787618d3f7a800b9c4d6cc2c3757091fd3ab5d108b239ccf5961590f1206b9a042be06700e54bdf900cb10292aece2434 SHA512 874137d11d6403c9a4c944ecb847ca2e83cc13d9299672028d5c889d8c8c055d77ce02edda341b5b749166a4cacc65b9947b659fe3c02684087328c024a32487

diff --git a/sci-physics/espresso/espresso-4.2.2.ebuild b/sci-physics/espresso/espresso-4.2.2.ebuild
new file mode 100644
index 000000000000..faa88fa89fb1
--- /dev/null
+++ b/sci-physics/espresso/espresso-4.2.2.ebuild
@@ -0,0 +1,154 @@
+# Copyright 1999-2025 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{9..12} )
+
+inherit cmake cuda python-single-r1 savedconfig
+
+DESCRIPTION="Extensible Simulation Package for Research on Soft matter"
+HOMEPAGE="https://espressomd.org"
+
+if [[ ${PV} = 9999 ]]; then
+	EGIT_REPO_URI="https://github.com/${PN}md/${PN}.git"
+	EGIT_BRANCH="python"
+	inherit git-r3
+else
+	SRC_URI="https://github.com/${PN}md/${PN}/releases/download/${PV}/${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86 ~amd64-linux"
+	S="${WORKDIR}/${PN}"
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE="cuda doc examples +fftw +hdf5 test"
+RESTRICT="!test? ( test )"
+
+REQUIRED_USE="
+	${PYTHON_REQUIRED_USE}"
+
+RDEPEND="
+	${PYTHON_DEPS}
+	$(python_gen_cond_dep '
+		>=dev-python/cython-0.26.1[${PYTHON_USEDEP}]
+		<dev-python/numpy-2[${PYTHON_USEDEP}]
+	')
+	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
+	fftw? ( sci-libs/fftw:3.0 )
+	dev-libs/boost:=[mpi]
+	hdf5? ( <sci-libs/hdf5-1.13:=[mpi] )
+"
+
+DEPEND="${RDEPEND}
+	doc? (
+		app-text/doxygen[dot]
+		dev-texlive/texlive-latexextra
+		virtual/latex-base
+	)
+	test? (
+		$(python_gen_cond_dep '
+			dev-python/scipy[${PYTHON_USEDEP}]
+		')
+	)
+"
+
+DOCS=( AUTHORS NEWS Readme.md ChangeLog )
+
+PATCHES=(
+	"${FILESDIR}/${PN}-4.2.0-fix-disable-test.patch"
+	"${FILESDIR}"/0001-allow-building-test-deps-without-running-ctest-indir.patch
+)
+
+src_prepare() {
+	use cuda && cuda_src_prepare
+	cmake_src_prepare
+
+	# These produce tests that aren't run by "make check", but ctest picks
+	# them up by default, against upstream's intention.
+	cd testsuite || die
+	cmake_comment_add_subdirectory cmake scripts
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DWITH_CUDA=$(usex cuda)
+		-DPYTHON_EXECUTABLE="${PYTHON}"
+		-DWITH_TESTS=$(usex test)
+		-DINSTALL_PYPRESSO=OFF
+		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw)
+		-DWITH_HDF5=$(usex hdf5)
+		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
+	)
+	cmake_src_configure
+}
+
+src_compile() {
+	cmake_src_compile
+	use doc && cmake_build doxygen
+	[[ ${PV} = 9999 ]] && use doc && cmake_build ug dg tutorials
+}
+
+src_test() {
+	CMAKE_SKIP_TESTS=(
+		# These 13 tests fail with
+		# "The MPI_Type_free() function was called before MPI_INIT was invoked."
+		#
+		# I do not know why. But, we didn't used to run any tests at all,
+		# so, baby steps.
+		SingleReaction_test
+		reaction_methods_utils_test
+		rotation_test
+		grid_test
+		Lattice_test
+		lb_exceptions
+		thermostats_test
+		bonded_interactions_map_test
+		ObjectHandle_test
+		AutoParameters_test
+		Accumulators_test
+		Constraints_test
+		Actors_test
+	)
+
+	# testsuite uses exclude_from_all, and lists all targets as deps for their custom rule
+	cmake_build check
+	cmake_src_test
+}
+
+src_install() {
+	local i docdir="${S}"
+
+	cmake_src_install
+
+	python_optimize
+
+	insinto /usr/share/${PN}/
+	doins "${BUILD_DIR}/myconfig-sample.hpp"
+
+	save_config "${BUILD_DIR}/src/config/myconfig-final.hpp"
+
+	if use doc; then
+		dodoc -r "${BUILD_DIR}/doc/doxygen/html"
+	fi
+
+	if use examples; then
+		insinto "/usr/share/${PN}/examples/python"
+		doins -r samples/${i}/.
+	fi
+}
+
+pkg_postinst() {
+	echo
+	elog "Please read and cite:"
+	elog "ESPResSo, Comput. Phys. Commun. 174(9) ,704, 2006."
+	elog "https://dx.doi.org/10.1016/j.cpc.2005.10.005"
+	echo
+	elog "If you need more features, change"
+	elog "/etc/portage/savedconfig/${CATEGORY}/${PF}"
+	elog "and reemerge with USE=savedconfig"
+	echo
+	elog "For a full feature list see:"
+	elog "/usr/share/${PN}/myconfig-sample.hpp"
+	echo
+}

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Eli Schwartz]

commit:     6b59ebad8cde801478b8e0bfc0dd431bd23ee828
Author:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Tue Sep  9 18:15:35 2025 +0000
Commit:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Tue Sep  9 20:52:40 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6b59ebad

sci-physics/espresso: update EAPI 7 -> 8

The upstream project does a wonky. Our buildtype "Gentoo" (eapi 7) is
ignored, and results in RelWithDebInfo using stock cmake flags as the
eclass doesn't erase "foreign" buildtype flags, namely -O3 -DNDEBUG,
which in turn masks a boost assert in a single unittest.  The -9999
ebuild somehow passes this test. Today is not my day for bisecting this.

Bug: https://bugs.gentoo.org/962537
Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>

 sci-physics/espresso/espresso-4.2.2.ebuild | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/sci-physics/espresso/espresso-4.2.2.ebuild b/sci-physics/espresso/espresso-4.2.2.ebuild
index 392c61bed0bf..750ce49e0798 100644
--- a/sci-physics/espresso/espresso-4.2.2.ebuild
+++ b/sci-physics/espresso/espresso-4.2.2.ebuild
@@ -1,11 +1,11 @@
 # Copyright 1999-2025 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
 PYTHON_COMPAT=( python3_{9..12} )
 
-inherit cmake cuda python-single-r1 savedconfig
+inherit cmake cuda flag-o-matic python-single-r1 savedconfig
 
 DESCRIPTION="Extensible Simulation Package for Research on Soft matter"
 HOMEPAGE="https://espressomd.org"
@@ -74,6 +74,10 @@ src_prepare() {
 }
 
 src_configure() {
+	# cmake.eclass for EAPI 8 finally, correctly, wipes out -DNDEBUG, leading
+	# to test fails. Fixed in git.
+	append-cppflags -DBOOST_DISABLE_ASSERTS
+
 	local mycmakeargs=(
 		-DWITH_CUDA=$(usex cuda)
 		-DPYTHON_EXECUTABLE="${PYTHON}"

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Eli Schwartz]

commit:     3ae01f5b433dddcd664aad1f715d420cfe0ce9ed
Author:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Tue Sep  9 19:10:02 2025 +0000
Commit:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Tue Sep  9 20:52:40 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3ae01f5b

sci-physics/espresso: enable py3.13

Formerly blocked on numpy-2, passes tests on 3.13 as soon as numpy
supports it.

Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>

 sci-physics/espresso/espresso-4.2.2.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-physics/espresso/espresso-4.2.2.ebuild b/sci-physics/espresso/espresso-4.2.2.ebuild
index 750ce49e0798..29083159233b 100644
--- a/sci-physics/espresso/espresso-4.2.2.ebuild
+++ b/sci-physics/espresso/espresso-4.2.2.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{9..12} )
+PYTHON_COMPAT=( python3_{11..13} )
 
 inherit cmake cuda flag-o-matic python-single-r1 savedconfig
 

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Eli Schwartz]

commit:     3cb8cca70e5cdb8a072b695e885423c36d5c7ede
Author:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Tue Sep  9 19:29:50 2025 +0000
Commit:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Tue Sep  9 20:52:40 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3cb8cca7

sci-physics/espresso: rm unused CMakeList.txt false positive for cmake4

The h5xx project is header-only C++ wrappers for hdf5. It is included as
a submodule in order to pass the submodule via target_include_directories()
in the main project; the submodule's own CMakeLists.txt is never
processed at all.

Closes: https://bugs.gentoo.org/962537
Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>

 sci-physics/espresso/espresso-4.2.2.ebuild | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/sci-physics/espresso/espresso-4.2.2.ebuild b/sci-physics/espresso/espresso-4.2.2.ebuild
index 29083159233b..2cf9fe0854aa 100644
--- a/sci-physics/espresso/espresso-4.2.2.ebuild
+++ b/sci-physics/espresso/espresso-4.2.2.ebuild
@@ -63,6 +63,14 @@ PATCHES=(
 	"${FILESDIR}"/${P}-numpy-2.x.patch
 )
 
+src_unpack() {
+	default
+
+	# vendored, cmake4 false positive. Used solely as a directory of *.hpp
+	rm "${S}"/libs/h5xx/CMakeLists.txt || die
+	rm -r "${S}"/libs/h5xx/example || die
+}
+
 src_prepare() {
 	use cuda && cuda_src_prepare
 	cmake_src_prepare

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Eli Schwartz]

commit:     57d676558268fd53454cc4a8a601eae7203a2124
Author:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Tue Sep  9 20:50:34 2025 +0000
Commit:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Tue Sep  9 20:52:41 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=57d67655

sci-physics/espresso: remove test skips

Seems to have been fixed by 4.2.2.

Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>

 sci-physics/espresso/espresso-4.2.2.ebuild | 21 ---------------------
 1 file changed, 21 deletions(-)

diff --git a/sci-physics/espresso/espresso-4.2.2.ebuild b/sci-physics/espresso/espresso-4.2.2.ebuild
index 2cf9fe0854aa..f2c44d2d7c77 100644
--- a/sci-physics/espresso/espresso-4.2.2.ebuild
+++ b/sci-physics/espresso/espresso-4.2.2.ebuild
@@ -105,27 +105,6 @@ src_compile() {
 }
 
 src_test() {
-	CMAKE_SKIP_TESTS=(
-		# These 13 tests fail with
-		# "The MPI_Type_free() function was called before MPI_INIT was invoked."
-		#
-		# I do not know why. But, we didn't used to run any tests at all,
-		# so, baby steps.
-		SingleReaction_test
-		reaction_methods_utils_test
-		rotation_test
-		grid_test
-		Lattice_test
-		lb_exceptions
-		thermostats_test
-		bonded_interactions_map_test
-		ObjectHandle_test
-		AutoParameters_test
-		Accumulators_test
-		Constraints_test
-		Actors_test
-	)
-
 	# testsuite uses exclude_from_all, and lists all targets as deps for their custom rule
 	cmake_build check
 	cmake_src_test

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Eli Schwartz]

commit:     988f19e3d5b0775a9376372b2d964bc475b4e472
Author:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Tue Sep  9 19:42:55 2025 +0000
Commit:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Tue Sep  9 20:52:41 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=988f19e3

sci-physics/espresso: sync live

Propagate various fixes from 4.2.2

- patches are just backports, skipped
- boost asserts are fixed upstream

Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>

 sci-physics/espresso/espresso-9999.ebuild | 27 +++++++++++++++++++--------
 1 file changed, 19 insertions(+), 8 deletions(-)

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index 4288c6995c8f..e1d0bca5727e 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -1,9 +1,9 @@
 # Copyright 1999-2025 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
-PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_COMPAT=( python3_{11..13} )
 
 inherit cmake cuda python-single-r1 savedconfig
 
@@ -17,15 +17,13 @@ if [[ ${PV} = 9999 ]]; then
 else
 	SRC_URI="https://github.com/${PN}md/${PN}/releases/download/${PV}/${P}.tar.gz"
 	KEYWORDS="~amd64 ~x86 ~amd64-linux"
+	S="${WORKDIR}/${PN}"
 fi
-S="${WORKDIR}/${PN}"
 
 LICENSE="GPL-3"
 SLOT="0"
 IUSE="cuda doc examples +fftw +hdf5 test"
-
-# unittest_decorators not packaged
-RESTRICT="test"
+RESTRICT="!test? ( test )"
 
 REQUIRED_USE="
 	${PYTHON_REQUIRED_USE}"
@@ -48,6 +46,11 @@ DEPEND="${RDEPEND}
 		dev-texlive/texlive-latexextra
 		virtual/latex-base
 	)
+	test? (
+		$(python_gen_cond_dep '
+			dev-python/scipy[${PYTHON_USEDEP}]
+		')
+	)
 "
 
 DOCS=( AUTHORS NEWS Readme.md ChangeLog )
@@ -55,6 +58,11 @@ DOCS=( AUTHORS NEWS Readme.md ChangeLog )
 src_prepare() {
 	use cuda && cuda_src_prepare
 	cmake_src_prepare
+
+	# These produce tests that aren't run by "make check", but ctest picks
+	# them up by default, against upstream's intention.
+	cd testsuite || die
+	cmake_comment_add_subdirectory cmake scripts
 }
 
 src_configure() {
@@ -66,7 +74,6 @@ src_configure() {
 		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw)
 		-DWITH_HDF5=$(usex hdf5)
 		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
-		-DCMAKE_SKIP_RPATH=YES
 	)
 	cmake_src_configure
 }
@@ -78,7 +85,9 @@ src_compile() {
 }
 
 src_test() {
-	LD_PRELOAD="${BUILD_DIR}/src/core/Espresso_core.so" cmake_src_test
+	# testsuite uses exclude_from_all, and lists all targets as deps for their custom rule
+	cmake_build check
+	cmake_src_test
 }
 
 src_install() {
@@ -86,6 +95,8 @@ src_install() {
 
 	cmake_src_install
 
+	python_optimize
+
 	insinto /usr/share/${PN}/
 	doins "${BUILD_DIR}/myconfig-sample.hpp"
 

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Eli Schwartz]

commit:     8a3427d00508de17ff7f621f57077a96494235bb
Author:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Tue Sep  9 21:38:46 2025 +0000
Commit:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Wed Sep 10 03:18:46 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8a3427d0

sci-physics/espresso: remove redundant DISABLE_FIND_PACKAGE

Fixes: 87ad744e3f351ce03906019a1025fa52454125af
Closes: https://bugs.gentoo.org/836000
Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>

 sci-physics/espresso/espresso-4.2.0.ebuild | 1 -
 sci-physics/espresso/espresso-4.2.2.ebuild | 1 -
 sci-physics/espresso/espresso-9999.ebuild  | 1 -
 3 files changed, 3 deletions(-)

diff --git a/sci-physics/espresso/espresso-4.2.0.ebuild b/sci-physics/espresso/espresso-4.2.0.ebuild
index 73c846fd7f1a..7a22abf93c3d 100644
--- a/sci-physics/espresso/espresso-4.2.0.ebuild
+++ b/sci-physics/espresso/espresso-4.2.0.ebuild
@@ -83,7 +83,6 @@ src_configure() {
 		-DINSTALL_PYPRESSO=OFF
 		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw)
 		-DWITH_HDF5=$(usex hdf5)
-		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
 	)
 	cmake_src_configure
 }

diff --git a/sci-physics/espresso/espresso-4.2.2.ebuild b/sci-physics/espresso/espresso-4.2.2.ebuild
index f2c44d2d7c77..6035862228ba 100644
--- a/sci-physics/espresso/espresso-4.2.2.ebuild
+++ b/sci-physics/espresso/espresso-4.2.2.ebuild
@@ -93,7 +93,6 @@ src_configure() {
 		-DINSTALL_PYPRESSO=OFF
 		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw)
 		-DWITH_HDF5=$(usex hdf5)
-		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
 	)
 	cmake_src_configure
 }

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index e1d0bca5727e..8a705d3ce706 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -73,7 +73,6 @@ src_configure() {
 		-DINSTALL_PYPRESSO=OFF
 		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw)
 		-DWITH_HDF5=$(usex hdf5)
-		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
 	)
 	cmake_src_configure
 }

[gentoo-commits] repo/gentoo:master commit in: sci-physics/espresso/

[Eli Schwartz]

commit:     86be76aee2bb150b0ae69acab515c46be67bd58d
Author:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 11 01:26:04 2025 +0000
Commit:     Eli Schwartz <eschwartz <AT> gentoo <DOT> org>
CommitDate: Thu Sep 11 05:52:39 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=86be76ae

sci-physics/espresso: widen allowed hdf5 in live ebuild

It supports hdf5 >= 1.13 now, and exhanges it for not supporting "hdf5
built with cmake".

Bug: https://bugs.gentoo.org/927149
Signed-off-by: Eli Schwartz <eschwartz <AT> gentoo.org>

 sci-physics/espresso/espresso-9999.ebuild | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/sci-physics/espresso/espresso-9999.ebuild b/sci-physics/espresso/espresso-9999.ebuild
index 25f731d8180d..cc0a5e754d5a 100644
--- a/sci-physics/espresso/espresso-9999.ebuild
+++ b/sci-physics/espresso/espresso-9999.ebuild
@@ -28,6 +28,7 @@ RESTRICT="!test? ( test )"
 REQUIRED_USE="
 	${PYTHON_REQUIRED_USE}"
 
+# cmake built hdf5 fails to detect, -r1 switched to cmake
 RDEPEND="
 	${PYTHON_DEPS}
 	$(python_gen_cond_dep '
@@ -37,7 +38,7 @@ RDEPEND="
 	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
 	fftw? ( sci-libs/fftw:3.0 )
 	dev-libs/boost:=[mpi]
-	hdf5? ( <sci-libs/hdf5-1.13:=[mpi] )
+	hdf5? ( <sci-libs/hdf5-1.14.6-r1:=[mpi] )
 "
 
 DEPEND="${RDEPEND}