From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 908D21580E0 for ; Sun, 01 Jun 2025 04:13:22 +0000 (UTC) Received: from lists.gentoo.org (bobolink.gentoo.org [140.211.166.189]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) (Authenticated sender: relay-lists.gentoo.org@gentoo.org) by smtp.gentoo.org (Postfix) with ESMTPSA id 7B80434311C for ; Sun, 01 Jun 2025 04:13:22 +0000 (UTC) Received: from bobolink.gentoo.org (localhost [127.0.0.1]) by bobolink.gentoo.org (Postfix) with ESMTP id 6E2C511047E; Sun, 01 Jun 2025 04:13:14 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by bobolink.gentoo.org (Postfix) with ESMTPS id 6467611047E for ; Sun, 01 Jun 2025 04:13:14 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 175F13430A1 for ; Sun, 01 Jun 2025 04:13:14 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 742A324B9 for ; Sun, 01 Jun 2025 04:13:11 +0000 (UTC) From: "Sam James" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Sam James" Message-ID: <1748751136.d1a90b841d806c0f18eb46747fa5a9052ac9dece.sam@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: dev-lang/R/ X-VCS-Repository: repo/gentoo X-VCS-Files: dev-lang/R/Manifest dev-lang/R/R-4.4.2.ebuild X-VCS-Directories: dev-lang/R/ X-VCS-Committer: sam X-VCS-Committer-Name: Sam James X-VCS-Revision: d1a90b841d806c0f18eb46747fa5a9052ac9dece X-VCS-Branch: master Date: Sun, 01 Jun 2025 04:13:11 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: c1f63e8c-cfba-4ce5-b8b4-e809a0658c20 X-Archives-Hash: e49b152a01267fee6342a2205243b203 commit: d1a90b841d806c0f18eb46747fa5a9052ac9dece Author: Alfred Wingate protonmail com> AuthorDate: Thu May 29 16:00:54 2025 +0000 Commit: Sam James gentoo org> CommitDate: Sun Jun 1 04:12:16 2025 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d1a90b84 dev-lang/R: drop 4.4.2 Signed-off-by: Alfred Wingate protonmail.com> Part-of: https://github.com/gentoo/gentoo/pull/42337 Closes: https://github.com/gentoo/gentoo/pull/42337 Signed-off-by: Sam James gentoo.org> dev-lang/R/Manifest | 1 - dev-lang/R/R-4.4.2.ebuild | 251 ---------------------------------------------- 2 files changed, 252 deletions(-) diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest index fe02aeb44df8..bad70ecc4607 100644 --- a/dev-lang/R/Manifest +++ b/dev-lang/R/Manifest @@ -1,5 +1,4 @@ DIST R-4.4.1.tar.gz 37353459 BLAKE2B 2c44fcab719cc2a2cef4566fd4e6c22386f02827a41045ffa074ca2a6883089275354644bce47c9978ef5c96e7b9b21576e946500746c27dc00946ef3cde4fce SHA512 cc30172227b7d89a9d6e9d65c8622b2042bcbbf3f1b5e36c7460f60958a1a0589980a1867ec9989df2589c1618233f3382d4732700b147361ace3be6680b5643 -DIST R-4.4.2.tar.gz 37582785 BLAKE2B bda7e3d49c63095830d12d77bb91946c2e7b657895f3388b892ca29091dc6c23b42a6b7822910d6889f69715c3ad58f8031ab7a811f34efe0b352232e5135175 SHA512 b29d82242f70487f52849a5726610c03dffa4e54f1a32a9f3f76784fcf61f91d5c40cddee1029eeb9c9837ff26f382f348e8518dd68c84e9fc2192b981013d9a DIST R-4.4.3.tar.gz 40234425 BLAKE2B 2a7efdf1841c7bae66a0e8aef07b9e79dec9d2f1b4c32f12640eaf84f99b05ca2846eaf10a5d03e0a7fb6d0a4f00ab16cd84a618ebef7bec29c31bc04458f0db SHA512 2a1d1e5ee2e18c928e2b3e58df372083b4bbd0822863a8441404999209035436e236c8ffe3970827fbf3d765157365800ebb0bb46f361c6abe473ddec30be06f DIST R-4.5.0.tar.gz 40466335 BLAKE2B 29ebfab54139320a7da30dfc976e5e210c3536c7be13014210e0ea51529a688962ec0f5298fe82989174ecd1fcec3146aad9c29de3882e8e5bbe0dbeb187c880 SHA512 e32de0115f32c3e44f3a003deae6b35fa0ae1ed951f8a74d815e8a417de0e84547c2ec5386cf965208cc1c81e5d43a3706a15af929d295056201f2ffe6b9d84b DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06 diff --git a/dev-lang/R/R-4.4.2.ebuild b/dev-lang/R/R-4.4.2.ebuild deleted file mode 100644 index 3ef5f0bae607..000000000000 --- a/dev-lang/R/R-4.4.2.ebuild +++ /dev/null @@ -1,251 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs - -# latest git commit for R bash completion: -# https://github.com/deepayan/rcompletion -BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6 - -DESCRIPTION="Language and environment for statistical computing and graphics" -HOMEPAGE="https://www.r-project.org/" -SRC_URI=" - https://cran.r-project.org/src/base/R-4/${P}.tar.gz - https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion" - -LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64 ~arm64 ~hppa ~loong ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos" -IUSE="cairo doc icu java jpeg +libdeflate lto minimal nls openmp perl png prefix profile readline test tiff tk X" - -REQUIRED_USE=" - png? ( || ( cairo X ) ) - jpeg? ( || ( cairo X ) ) - tiff? ( || ( cairo X ) )" -RESTRICT=" - minimal? ( test ) - !test? ( test )" - -# At least one package installation in the test suite requires TeX, -# and will fail without it (bug #718056). -DEPEND=" - app-arch/bzip2 - app-arch/xz-utils - app-text/ghostscript-gpl - dev-libs/libpcre2:= - >=dev-libs/tre-0.8.0_p20210321[approx] - net-misc/curl - sys-libs/zlib[minizip] - sys-apps/coreutils - sys-libs/timezone-data - virtual/blas - virtual/lapack - cairo? ( - x11-libs/cairo:=[X=] - x11-libs/pango:= - ) - icu? ( dev-libs/icu:= ) - jpeg? ( media-libs/libjpeg-turbo:= ) - kernel_linux? ( net-libs/libtirpc:= ) - libdeflate? ( app-arch/libdeflate ) - perl? ( dev-lang/perl ) - png? ( media-libs/libpng:= ) - readline? ( sys-libs/readline:= ) - tiff? ( media-libs/tiff:= ) - tk? ( dev-lang/tk:= ) - X? ( - x11-libs/libX11 - x11-libs/libXmu - x11-libs/libXt - )" -RDEPEND="${DEPEND} - java? ( >=virtual/jre-1.8:* )" -BDEPEND=" - sys-apps/which - virtual/pkgconfig - doc? ( - virtual/latex-base - dev-texlive/texlive-fontsrecommended - ) - test? ( virtual/latex-base )" - -PATCHES=( - "${FILESDIR}"/R-4.3.0-parallel.patch - "${FILESDIR}"/R-4.3.0-no-LDFLAGS-in-libR-pkg-config.patch - "${FILESDIR}"/R-4.3.0-no-gzip-doc.patch -) - -# false positive, the linking step fails (as it should) -QA_CONFIG_IMPL_DECL_SKIP=( iconvlist ) - -pkg_pretend() { - [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp -} - -pkg_setup() { - if [[ ${MERGE_TYPE} != binary ]] && use openmp; then - tc-check-openmp - FORTRAN_NEED_OPENMP=1 - fi - - fortran-2_pkg_setup - - # avoid using existing R installation - unset R_HOME -} - -src_prepare() { - default - - # fix packages.html for doc (gentoo bug #205103) - sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ - -i src/library/tools/R/Rd.R || die - - # fix Rscript path when installed (gentoo bug #221061) - sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \ - -i src/unix/Makefile.in || die "sed unix Makefile failed" - - # fix HTML links to manual (gentoo bug #273957) - sed -e 's:\.\./manual/:manual/:g' \ - -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" - - use perl && - export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" - - # don't search /usr/local - sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die - - # Fix for Darwin (macOS) - if use prefix; then - if [[ ${CHOST} == *-darwin* ]] ; then - sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ - -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ - -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ - -e "/SHLIB_EXT/s/\.so/.dylib/" \ - -i configure.ac || die - # sort of "undo" 2.14.1-rmath-shared.patch - sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \ - -i src/nmath/standalone/Makefile.in || die - else - append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib" - fi - fi - - AT_M4DIR=m4 eautoreconf -} - -src_configure() { - # bug #944066 (try reomving after 4.4.2) - append-cflags -std=gnu17 - - filter-ldflags -Wl,-Bdirect -Bdirect - - econf \ - --enable-byte-compiled-packages \ - --enable-R-shlib \ - --disable-R-framework \ - --disable-R-static-lib \ - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ - --with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" \ - rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ - --with-system-tre \ - --without-aqua \ - --without-newAccelerate \ - $(use_enable java) \ - $(use_enable lto lto R) \ - $(use_enable nls) \ - $(use_enable openmp) \ - $(use_enable profile R-profiling) \ - $(use_enable profile memory-profiling) \ - $(use_with cairo) \ - $(use_with icu ICU) \ - $(use_with jpeg jpeglib) \ - $(use_with libdeflate libdeflate-compression) \ - $(use_with !minimal recommended-packages) \ - $(use_with png libpng) \ - $(use_with readline) \ - $(use_with tiff libtiff) \ - $(use_with tk tcltk) \ - $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \ - $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \ - $(use_with X x) -} - -src_compile() { - export VARTEXFONTS="${T}"/fonts - emake AR="$(tc-getAR)" - emake -C src/nmath/standalone shared AR="$(tc-getAR)" - use doc && emake info pdf -} - -src_install() { - default - emake -C src/nmath/standalone DESTDIR="${D}" install - - if use doc; then - emake DESTDIR="${D}" install-info install-pdf - dosym ../manual /usr/share/doc/${PF}/html/manual - fi - - newenvd - 99R <<-_EOF_ - LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib" - R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}" - _EOF_ - - newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN} - # The buildsystem has a different understanding of install_names than - # we require. Since it builds modules like shared objects (wrong), many - # objects (all modules) get an incorrect install_name. Fixing the build - # system here is not really trivial. - if [[ ${CHOST} == *-darwin* ]] ; then - local mod - pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die - for mod in $(find . -name "*.dylib") ; do - mod=${mod#./} - install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}" - done - popd >/dev/null || die - fi - - # Users are encouraged to access some of the the R documentation - # interactively, through functions like "contributors()" that - # tries to open the "AUTHORS" file. Other files can be accessed - # by name with RShowDoc(), and the documentation for e.g. license() - # and RShowDoc() suggests a few of these names. Here we try to - # collect as many names as possible that a user might actually - # try to view through R, because if we don't decompress them, - # then R doesn't know what to do with 'em. Bug #556706. - local INTERACTIVE_DOCS=( - AUTHORS - COPYING - FAQ - NEWS - THANKS - ) - - # Other data sources that are shipped as "documentation," but which - # need to be accessible via their original unmolested filenames. - local INTERACTIVE_DATA=( - BioC_mirrors.csv - CRAN_mirrors.csv - KEYWORDS.db - NEWS.rds - ) - - local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" ) - for f in "${NOCOMPRESS_DOCS[@]}"; do - docompress -x /usr/share/doc/${PF}/${f} - done - - # Finally, an extra copy of this started showing up at some point... - rm "${ED}"/usr/$(get_libdir)/R/COPYING || die -} - -pkg_postinst() { - if use java; then - einfo "Re-initializing java paths for ${P}" - R CMD javareconf - fi -}