From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 2F6A4158287 for ; Sun, 18 May 2025 08:27:57 +0000 (UTC) Received: from lists.gentoo.org (bobolink.gentoo.org [140.211.166.189]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) (Authenticated sender: relay-lists.gentoo.org@gentoo.org) by smtp.gentoo.org (Postfix) with ESMTPSA id 107AC3432FE for ; Sun, 18 May 2025 08:27:57 +0000 (UTC) Received: from bobolink.gentoo.org (localhost [127.0.0.1]) by bobolink.gentoo.org (Postfix) with ESMTP id 0F8811103DD; Sun, 18 May 2025 08:27:56 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by bobolink.gentoo.org (Postfix) with ESMTPS id 090201103DD for ; Sun, 18 May 2025 08:27:56 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id ABE403432FE for ; Sun, 18 May 2025 08:27:55 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 4592217F6 for ; Sun, 18 May 2025 08:27:54 +0000 (UTC) From: "David Seifert" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "David Seifert" Message-ID: <1747556864.aa34c5e1502a28fc8fb1e3c78fcbeae48269ff84.soap@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/bamtools/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/bamtools/Manifest sci-biology/bamtools/bamtools-2.5.3.ebuild X-VCS-Directories: sci-biology/bamtools/ X-VCS-Committer: soap X-VCS-Committer-Name: David Seifert X-VCS-Revision: aa34c5e1502a28fc8fb1e3c78fcbeae48269ff84 X-VCS-Branch: master Date: Sun, 18 May 2025 08:27:54 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 56c33124-71c3-48f0-a261-4605686acf5c X-Archives-Hash: 9ee8e6e74127d89d85dd44c10e14bd89 commit: aa34c5e1502a28fc8fb1e3c78fcbeae48269ff84 Author: David Seifert gentoo org> AuthorDate: Sun May 18 08:27:44 2025 +0000 Commit: David Seifert gentoo org> CommitDate: Sun May 18 08:27:44 2025 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=aa34c5e1 sci-biology/bamtools: add 2.5.3 Signed-off-by: David Seifert gentoo.org> sci-biology/bamtools/Manifest | 1 + sci-biology/bamtools/bamtools-2.5.3.ebuild | 33 ++++++++++++++++++++++++++++++ 2 files changed, 34 insertions(+) diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest index 5076fcaf1834..4fac261c0913 100644 --- a/sci-biology/bamtools/Manifest +++ b/sci-biology/bamtools/Manifest @@ -1 +1,2 @@ DIST bamtools-2.5.2.tar.gz 245729 BLAKE2B 5034ea1ec16b205488e421461ed74d8a98eae87eb7fc061e5928ad15512497a5338c9dbacbde51009c940acd55c25fccc2f3be2840d2821a8755a2a0b0370944 SHA512 540a4664abfbd1304600c17d47424c312a46e4238b0f0868f4037ddcc54c4487424e3d7820153084b3b512be8a4603e3ec5377a73311a617061460de1bfe49ef +DIST bamtools-2.5.3.tar.gz 245648 BLAKE2B f387dd1dbae87ba22e811f81afd144d1c0fab02cd3c61f0442a3383a4f91d019a3ec8f0765e8d2ab8727bb9f1b3b22f4a2aff424a7c0aaa93396eb7afe0e9ba7 SHA512 bde9d98048d9f30d7f3c4e75db97e610ab58148dedadd09a36ad2421a6357b24510abda2451452d1fb9b40e22e1b8fe6f4e4c6ee1c529c426055a050a24b52d8 diff --git a/sci-biology/bamtools/bamtools-2.5.3.ebuild b/sci-biology/bamtools/bamtools-2.5.3.ebuild new file mode 100644 index 000000000000..7a9dd5b7532d --- /dev/null +++ b/sci-biology/bamtools/bamtools-2.5.3.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2025 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit cmake + +DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files" +HOMEPAGE="https://github.com/pezmaster31/bamtools" + +if [[ ${PV} == *9999 ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/pezmaster31/bamtools.git" +else + SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64 ~x86" +fi + +LICENSE="MIT" +SLOT="0/${PV}" # no stable ABI yet + +RDEPEND=" + >=dev-libs/jsoncpp-1.8.0:= + sys-libs/zlib:=" +DEPEND="${RDEPEND}" +BDEPEND="virtual/pkgconfig" + +src_prepare() { + # delete bundled libs, just to be safe + rm -rf src/third_party/{gtest-1.6.0,jsoncpp} || die + + cmake_src_prepare +}