From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id AD4561584AD for ; Tue, 06 May 2025 13:53:29 +0000 (UTC) Received: from lists.gentoo.org (bobolink.gentoo.org [140.211.166.189]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) (Authenticated sender: relay-lists.gentoo.org@gentoo.org) by smtp.gentoo.org (Postfix) with ESMTPSA id 9B211343121 for ; Tue, 06 May 2025 13:53:29 +0000 (UTC) Received: from bobolink.gentoo.org (localhost [127.0.0.1]) by bobolink.gentoo.org (Postfix) with ESMTP id 5F8FB1104BC; Tue, 06 May 2025 13:53:04 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by bobolink.gentoo.org (Postfix) with ESMTPS id 4F13E1104B9 for ; Tue, 06 May 2025 13:53:04 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 07B0B3430F5 for ; Tue, 06 May 2025 13:53:04 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 4F6522822 for ; Tue, 06 May 2025 13:53:00 +0000 (UTC) From: "Alexander Puck Neuwirth" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Alexander Puck Neuwirth" Message-ID: <1746539530.c3475d9f4afad55d57ce8c09e8051281784f7950.alexander@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ngs/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/ngs/metadata.xml sci-biology/ngs/ngs-2.11.2.ebuild X-VCS-Directories: sci-biology/ngs/ X-VCS-Committer: alexander X-VCS-Committer-Name: Alexander Puck Neuwirth X-VCS-Revision: c3475d9f4afad55d57ce8c09e8051281784f7950 X-VCS-Branch: master Date: Tue, 06 May 2025 13:53:00 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 8621c0f5-7a14-46d4-a2a8-c3bbad632f85 X-Archives-Hash: bdb01f7475b7e28faa05fc2db01c2405 commit: c3475d9f4afad55d57ce8c09e8051281784f7950 Author: Alexander Puck Neuwirth neuwirth-informatik de> AuthorDate: Mon May 5 23:34:19 2025 +0000 Commit: Alexander Puck Neuwirth neuwirth-informatik de> CommitDate: Tue May 6 13:52:10 2025 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c3475d9f sci-biology/ngs: treeclean Signed-off-by: Alexander Puck Neuwirth neuwirth-informatik.de> sci-biology/ngs/metadata.xml | 15 -------------- sci-biology/ngs/ngs-2.11.2.ebuild | 43 --------------------------------------- 2 files changed, 58 deletions(-) diff --git a/sci-biology/ngs/metadata.xml b/sci-biology/ngs/metadata.xml deleted file mode 100644 index f165e6cbc..000000000 --- a/sci-biology/ngs/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ - - - - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - - - sci-biology@gentoo.org - Gentoo Biology Project - - - ncbi/ngs - - diff --git a/sci-biology/ngs/ngs-2.11.2.ebuild b/sci-biology/ngs/ngs-2.11.2.ebuild deleted file mode 100644 index 0574c5076..000000000 --- a/sci-biology/ngs/ngs-2.11.2.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_10 ) -inherit python-single-r1 java-pkg-2 - -DESCRIPTION="NGS Language Bindings " -HOMEPAGE="https://github.com/ncbi/ngs" -SRC_URI="https://github.com/ncbi/ngs/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="public-domain" -SLOT="0" -KEYWORDS="~amd64" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -DEPEND="${PYTHON_DEPS} - sci-biology/bamtools - virtual/jdk:1.8 -" -RDEPEND="${DEPEND} - virtual/jre:1.8 -" - -src_configure() { - # this is some non-standard configure script - ./configure || die -} - -src_install() { - dodir /usr/include - dodir /etc/profile.d - # Hard way around hard coded paths - find . -type f -exec sed -i \ - -e "s:/usr/local:${ED}/usr:g" \ - -e "s:/etc:${ED}/etc:g" \ - -e "s:/usr/lib:${ED}/usr/lib:g" \ - -e "s:/usr/include:${ED}/usr/include:g" \ - -e "s:setup.py -q install:setup.py install --root="${D}":g" \ - {} \; || die - default -}