From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id A9EAF15813A for ; Fri, 10 Jan 2025 14:43:34 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 8EBC7E07E2; Fri, 10 Jan 2025 14:43:33 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 74A02E07E2 for ; Fri, 10 Jan 2025 14:43:33 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 74031341C4B for ; Fri, 10 Jan 2025 14:43:32 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id D2F341DEA for ; Fri, 10 Jan 2025 14:43:30 +0000 (UTC) From: "Alexander Puck Neuwirth" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Alexander Puck Neuwirth" Message-ID: <1736520184.a7dc4f526211f342d5c6b48523f7daaf8ad1d32a.alexander@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: profiles/ X-VCS-Repository: proj/sci X-VCS-Files: profiles/package.mask X-VCS-Directories: profiles/ X-VCS-Committer: alexander X-VCS-Committer-Name: Alexander Puck Neuwirth X-VCS-Revision: a7dc4f526211f342d5c6b48523f7daaf8ad1d32a X-VCS-Branch: master Date: Fri, 10 Jan 2025 14:43:30 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 1bf2d055-e879-442a-a8ab-8a2790523d32 X-Archives-Hash: 2a49578b8caf3eea583202ab748e9adc commit: a7dc4f526211f342d5c6b48523f7daaf8ad1d32a Author: Alexander Puck Neuwirth neuwirth-informatik de> AuthorDate: Fri Jan 10 10:07:49 2025 +0000 Commit: Alexander Puck Neuwirth neuwirth-informatik de> CommitDate: Fri Jan 10 14:43:04 2025 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a7dc4f52 profiles: mask failing biology packages Signed-off-by: Alexander Puck Neuwirth neuwirth-informatik.de> profiles/package.mask | 24 ++++++++++++++++++++++-- 1 file changed, 22 insertions(+), 2 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 5770f4680..4be8ad7af 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -30,12 +30,32 @@ #--- END OF EXAMPLES --- +# Alexander Puck Neuwirth (2025-01-10) +# Download server is gone since about 2014. +sci-biology/vague-bin + +# Alexander Puck Neuwirth (2025-01-10) +# Missing packages org.ejml.simple and org.slf4j. +sci-misc/stanford-parser + +# Alexander Puck Neuwirth (2025-01-10) +# Upstream binary files removed. +sci-biology/NGSEPcore-bin + +# Alexander Puck Neuwirth (2025-01-10) +# Needs sci-biology/bam-readcount. +sci-biology/VarScan + +# Alexander Puck Neuwirth (2025-01-10) +# Compilation fails. +sci-biology/bam-readcount + # Alexander Puck Neuwirth (2024-11-26) -# Depends on removed version of vtk +# Depends on removed version of vtk. sci-biology/ants # Alexander Puck Neuwirth (2024-11-26) -# Depends on masked sci-biology/ants +# Depends on masked sci-biology/ants. sci-biology/samri # Nowa Ammerlaan (2024-07-18)