From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 5401F1581EC for ; Sat, 23 Nov 2024 17:31:17 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 95D3FE07F1; Sat, 23 Nov 2024 17:31:16 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 7564BE07F1 for ; Sat, 23 Nov 2024 17:31:16 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 5C95733BE12 for ; Sat, 23 Nov 2024 17:31:15 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id EB6DA11DF for ; Sat, 23 Nov 2024 17:31:13 +0000 (UTC) From: "Andreas Sturmlechner" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andreas Sturmlechner" Message-ID: <1732383048.241d794514f48b754fa7ec9eada7c0cefcb925a7.asturm@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-chemistry/pymol/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-chemistry/pymol/Manifest sci-chemistry/pymol/pymol-3.0.0.ebuild X-VCS-Directories: sci-chemistry/pymol/ X-VCS-Committer: asturm X-VCS-Committer-Name: Andreas Sturmlechner X-VCS-Revision: 241d794514f48b754fa7ec9eada7c0cefcb925a7 X-VCS-Branch: master Date: Sat, 23 Nov 2024 17:31:13 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 351fd4ba-4cfb-4516-a7ed-f76b477241de X-Archives-Hash: 8cd18636f3dae200915b5019cb0eecd0 commit: 241d794514f48b754fa7ec9eada7c0cefcb925a7 Author: Andreas Sturmlechner gentoo org> AuthorDate: Sat Nov 23 14:02:02 2024 +0000 Commit: Andreas Sturmlechner gentoo org> CommitDate: Sat Nov 23 17:30:48 2024 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=241d7945 sci-chemistry/pymol: drop 3.0.0 Signed-off-by: Andreas Sturmlechner gentoo.org> sci-chemistry/pymol/Manifest | 1 - sci-chemistry/pymol/pymol-3.0.0.ebuild | 115 --------------------------------- 2 files changed, 116 deletions(-) diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest index 2ef25b2b27fa..7b6fd1d91c5d 100644 --- a/sci-chemistry/pymol/Manifest +++ b/sci-chemistry/pymol/Manifest @@ -1,2 +1 @@ -DIST pymol-1.8.4.0.png.xz 19528 BLAKE2B f3d23d4cedca3d8bb96b20646a548da4be570697e3346a11b01c5c3599b536ba4697be08472dfa8a4f6533167defc1a37a1de332931a73857319cb28fd42cd2b SHA512 40bb0d3f226476f6e047b5361956aad955232a97641474765eaa5204f0539aee3810e0266213618a45364f9f31f6eb18380b17e0c79f64065f7b62a9016caa7c DIST pymol-3.0.0.tar.gz 29510174 BLAKE2B b67818e408045e386e44a203f29cd94a0ce34ec706776d29f78f1720bdc5c79d88f3b3e178882295b5a636d97fe70ff49eb1b021a9a6b96f0f4216bc392219d1 SHA512 eab05a46220339a05d8d4facdce6bfa08c6fc8a858a7b228236ef6c4054207059ef0f53a26bedebe4084a74b510015937fb4477f99612b21412cd75bf0c376a2 diff --git a/sci-chemistry/pymol/pymol-3.0.0.ebuild b/sci-chemistry/pymol/pymol-3.0.0.ebuild deleted file mode 100644 index bb34934cd2fd..000000000000 --- a/sci-chemistry/pymol/pymol-3.0.0.ebuild +++ /dev/null @@ -1,115 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..12} ) -DISTUTILS_USE_PEP517="setuptools" -DISTUTILS_EXT=1 - -inherit desktop flag-o-matic xdg distutils-r1 - -DESCRIPTION="A Python-extensible molecular graphics system" -HOMEPAGE="https://www.pymol.org/" -SRC_URI=" - https://dev.gentoo.org/~pacho/${PN}/${PN}-1.8.4.0.png.xz - https://github.com/schrodinger/pymol-open-source/archive/v${PV}.tar.gz -> ${P}.tar.gz - " - -S="${WORKDIR}"/${PN}-open-source-${PV} - -LICENSE="BitstreamVera BSD freedist HPND OFL-1.0 public-domain UoI-NCSA" #844991 -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" -IUSE="+netcdf web" - -DEPEND=" - dev-cpp/msgpack-cxx - dev-libs/mmtf-cpp - dev-python/numpy[${PYTHON_USEDEP}] - sys-libs/zlib - media-libs/freetype:2 - media-libs/glew:0= - media-libs/glm - media-libs/libpng:0= - netcdf? ( sci-libs/netcdf:0= ) -" -RDEPEND=" - ${DEPEND} - media-video/mpeg-tools - dev-python/pyopengl[${PYTHON_USEDEP}] - dev-python/pyqt5[opengl,${PYTHON_USEDEP}] - dev-python/pmw[${PYTHON_USEDEP}] - sci-chemistry/chemical-mime-data -" - -PATCHES=( - "${FILESDIR}/${PN}-2.5.0-format-security.patch" -) - -python_prepare_all() { - sed \ - -e "s:\"/usr:\"${EPREFIX}/usr:g" \ - -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \ - -i setup.py || die - - sed \ - -e "s:/opt/local:${EPREFIX}/usr:g" \ - -e '/ext_comp_args/s:\[.*\]:[]:g' \ - -i setup.py || die - sed \ - -e "s:\['msgpackc'\]:\['msgpack'\]:g" \ - -i setup.py || die - - append-cxxflags -std=c++17 - - distutils-r1_python_prepare_all -} - -python_configure_all() { - # -Werror=odr - # https://bugs.gentoo.org/933235 - # https://github.com/schrodinger/pymol-open-source/issues/395 - filter-lto - - use !netcdf && DISTUTILS_ARGS=( --no-vmd-plugins ) -} - -python_install() { - distutils-r1_python_install \ - --pymol-path="${EPREFIX}/usr/share/pymol" - - sed \ - -e '1i#!/usr/bin/env python' \ - "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die - python_doscript "${T}"/${PN} -} - -python_install_all() { - distutils-r1_python_install_all - - # Move data to correct location - dodir /usr/share/pymol - mv "${D}/$(python_get_sitedir)"/pymol/pymol_path/* "${ED}/usr/share/pymol" || die - - # These environment variables should not go in the wrapper script, or else - # it will be impossible to use the PyMOL libraries from Python. - cat >> "${T}"/20pymol <<- EOF || die - PYMOL_PATH="${EPREFIX}/usr/share/pymol" - PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" - PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" - EOF - - doenvd "${T}"/20pymol - - newicon "${WORKDIR}"/${PN}-1.8.4.0.png ${PN}.png - make_desktop_entry "${PN} %u" PyMol ${PN} \ - "Graphics;Education;Science;Chemistry;" \ - "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;" - - if ! use web; then - rm -rf "${D}/$(python_get_sitedir)/web" || die - fi - - rm -f "${ED}"/usr/share/${PN}/LICENSE || die -}