From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 582E01581C1 for ; Wed, 10 Jul 2024 12:45:35 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id B87F8E2B22; Wed, 10 Jul 2024 12:45:34 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 9CF01E2B21 for ; Wed, 10 Jul 2024 12:45:34 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id B465533BE19 for ; Wed, 10 Jul 2024 12:45:33 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 4C81F1E0F for ; Wed, 10 Jul 2024 12:45:32 +0000 (UTC) From: "Michał Górny" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Michał Górny" Message-ID: <1720615529.3ff91e0e7be1cf2b9dbdbd864dcfc6e7f95ecdb6.mgorny@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: dev-python/xarray/ X-VCS-Repository: repo/gentoo X-VCS-Files: dev-python/xarray/xarray-2024.6.0-r1.ebuild X-VCS-Directories: dev-python/xarray/ X-VCS-Committer: mgorny X-VCS-Committer-Name: Michał Górny X-VCS-Revision: 3ff91e0e7be1cf2b9dbdbd864dcfc6e7f95ecdb6 X-VCS-Branch: master Date: Wed, 10 Jul 2024 12:45:32 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: cca20ef9-488e-4eac-868e-aa14efd345f8 X-Archives-Hash: e41903ca2d79d1d27d6f72d51766f1c2 commit: 3ff91e0e7be1cf2b9dbdbd864dcfc6e7f95ecdb6 Author: Michał Górny gentoo org> AuthorDate: Wed Jul 10 12:35:59 2024 +0000 Commit: Michał Górny gentoo org> CommitDate: Wed Jul 10 12:45:29 2024 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3ff91e0e dev-python/xarray: Fix testing against dev-python/netcdf4 Add the optional test dep on dev-python/netcdf4, with appropriate USE flags. Deselect tests that are failing. Signed-off-by: Michał Górny gentoo.org> dev-python/xarray/xarray-2024.6.0-r1.ebuild | 108 ++++++++++++++++++++++++++++ 1 file changed, 108 insertions(+) diff --git a/dev-python/xarray/xarray-2024.6.0-r1.ebuild b/dev-python/xarray/xarray-2024.6.0-r1.ebuild new file mode 100644 index 000000000000..78b8d5d2f3e6 --- /dev/null +++ b/dev-python/xarray/xarray-2024.6.0-r1.ebuild @@ -0,0 +1,108 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=setuptools +PYTHON_COMPAT=( python3_{10..12} ) + +inherit distutils-r1 pypi + +DESCRIPTION="N-D labeled arrays and datasets in Python" +HOMEPAGE=" + https://xarray.pydata.org/ + https://github.com/pydata/xarray/ + https://pypi.org/project/xarray/ +" + +LICENSE="Apache-2.0" +SLOT="0" +KEYWORDS="~amd64 ~arm64 ~x86" +IUSE="big-endian" + +RDEPEND=" + >=dev-python/numpy-1.23[${PYTHON_USEDEP}] + >=dev-python/pandas-2.0[${PYTHON_USEDEP}] + >=dev-python/packaging-23.1[${PYTHON_USEDEP}] +" +# note: most of the test dependencies are optional +BDEPEND=" + dev-python/setuptools-scm[${PYTHON_USEDEP}] + test? ( + dev-python/bottleneck[${PYTHON_USEDEP}] + dev-python/cftime[${PYTHON_USEDEP}] + dev-python/hypothesis[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/netcdf4[bzip2,szip,${PYTHON_USEDEP}] + dev-python/toolz[${PYTHON_USEDEP}] + !hppa? ( >=dev-python/scipy-1.4[${PYTHON_USEDEP}] ) + ) +" + +EPYTEST_XDIST=1 +distutils_enable_tests pytest + +python_test() { + local EPYTEST_DESELECT=( + # TODO: these fail with filter errors even if netcdf4 is built + # with blosc/zstd support + 'xarray/tests/test_backends.py::TestNetCDF4Data::test_compression_encoding[zstd]' + 'xarray/tests/test_backends.py::TestNetCDF4Data::test_compression_encoding[blosc_lz]' + 'xarray/tests/test_backends.py::TestNetCDF4Data::test_compression_encoding[blosc_lz4]' + 'xarray/tests/test_backends.py::TestNetCDF4Data::test_compression_encoding[blosc_lz4hc]' + 'xarray/tests/test_backends.py::TestNetCDF4Data::test_compression_encoding[blosc_zlib]' + 'xarray/tests/test_backends.py::TestNetCDF4Data::test_compression_encoding[blosc_zstd]' + ) + + if ! has_version ">=dev-python/scipy-1.4[${PYTHON_USEDEP}]" ; then + EPYTEST_DESELECT+=( + 'xarray/tests/test_missing.py::test_interpolate_na_2d[coords1]' + ) + + if ! has_version "dev-python/scipy[${PYTHON_USEDEP}]" ; then + EPYTEST_DESELECT+=( + xarray/tests/test_calendar_ops.py::test_interp_calendar + ) + fi + fi + + if use big-endian ; then + EPYTEST_DESELECT+=( + # Appears to be a numpy issue in display? See bug #916460. + 'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:12:43.145224193-ns-int64-20-True]' + 'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1970-09-21T00:12:44.145224808-ns-float64-1e+30-True]' + 'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:12:43.145225216-ns-float64--9.223372036854776e+18-True]' + 'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:12:43.145224193-ns-int64-None-False]' + 'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:12:43.145225-us-int64-None-False]' + 'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1970-01-01T00:00:01.000001-us-int64-None-False]' + 'xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:21:52.901038080-ns-float32-20.0-True]' + ) + fi + + if [[ ${ABI} != *64* ]]; then + EPYTEST_DESELECT+=( + # these tests hardcode object sizes for 64-bit arches + # https://github.com/pydata/xarray/issues/9127 + xarray/tests/test_dataarray.py::TestDataArray::test_repr_multiindex + xarray/tests/test_dataarray.py::TestDataArray::test_repr_multiindex_long + xarray/tests/test_dataset.py::TestDataset::test_repr_multiindex + xarray/tests/test_formatting.py::test_array_repr_dtypes_unix + ) + fi + + if has_version ">=dev-python/numpy-2[${PYTHON_USEDEP}]"; then + EPYTEST_DESELECT+=( + xarray/tests/test_dataset.py::TestDataset::test_polyfit_warnings + # https://github.com/pandas-dev/pandas/issues/56996 + xarray/tests/test_backends.py::test_use_cftime_false_standard_calendar_in_range + # TODO + 'xarray/tests/test_dtypes.py::test_maybe_promote[q-expected19]' + 'xarray/tests/test_dtypes.py::test_maybe_promote[Q-expected20]' + 'xarray/tests/test_conventions.py::TestCFEncodedDataStore::test_roundtrip_mask_and_scale[dtype0-create_unsigned_masked_scaled_data-create_encoded_unsigned_masked_scaled_data]' + 'xarray/tests/test_conventions.py::TestCFEncodedDataStore::test_roundtrip_mask_and_scale[dtype1-create_unsigned_masked_scaled_data-create_encoded_unsigned_masked_scaled_data]' + ) + fi + + local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1 + epytest +}