* [gentoo-commits] repo/proj/guru:master commit in: sci-biology/cytoscape-bin/
@ 2024-01-20 22:13 David Roman
0 siblings, 0 replies; 5+ messages in thread
From: David Roman @ 2024-01-20 22:13 UTC (permalink / raw
To: gentoo-commits
commit: 828d4527193e60d8964f0a57c99813b6656182c9
Author: Andrés Becerra <andres.becerra <AT> gmail <DOT> com>
AuthorDate: Sat Jan 20 20:06:50 2024 +0000
Commit: David Roman <davidroman96 <AT> gmail <DOT> com>
CommitDate: Sat Jan 20 20:06:50 2024 +0000
URL: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=828d4527
sci-biology/cytoscape-bin: new package
Signed-off-by: Andrés Becerra <andres.becerra <AT> gmail.com>
sci-biology/cytoscape-bin/Manifest | 1 +
.../cytoscape-bin/cytoscape-bin-3.10.1.ebuild | 41 ++++++++++++++++++++++
sci-biology/cytoscape-bin/metadata.xml | 16 +++++++++
3 files changed, 58 insertions(+)
diff --git a/sci-biology/cytoscape-bin/Manifest b/sci-biology/cytoscape-bin/Manifest
new file mode 100644
index 0000000000..cf3a195ac3
--- /dev/null
+++ b/sci-biology/cytoscape-bin/Manifest
@@ -0,0 +1 @@
+DIST cytoscape-unix-3.10.1.tar.gz 344323313 BLAKE2B ffb27144b9c717762c4b96ea192cbde5a83e0e6264022e59f007a5989d0ba636959e459361ccc36a38ffc5615074e644daef5835cb56040e8f6072e279569c59 SHA512 4b37e72e339a60a5275ab31f112af5b042e190c26d6557c66e9ff5bc0aff547b481548c66696442ea5ef8df4bc3c191ef0f3f675060d033c2535ac954567218e
diff --git a/sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild b/sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild
new file mode 100644
index 0000000000..b64d213453
--- /dev/null
+++ b/sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild
@@ -0,0 +1,41 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI="8"
+
+inherit desktop java-pkg-2
+
+DESCRIPTION="A visualization platform for molecular interaction networks"
+HOMEPAGE="http://www.cytoscape.org/"
+SRC_URI="https://github.com/cytoscape/cytoscape/releases/download/${PV}/cytoscape-unix-${PV}.tar.gz"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+RDEPEND=">=virtual/jre-11-r2"
+
+S="${WORKDIR}"
+
+src_install() {
+ MY_PN="cytoscape"
+ MYW="${WORKDIR}/${MY_PN}-unix-${PV}"
+
+ insinto "/opt/${MY_PN}"
+ doins -r ${MYW}/apps
+ doins -r ${MYW}/framework
+ doins -r ${MYW}/sampleData
+
+ cd ${MYW}
+ sh gen_vmoptions.sh
+ doins Cytoscape.vmoptions
+ exeinto "/opt/${MY_PN}"
+ doexe "${MYW}/${MY_PN}.sh"
+ dosym "${EPREFIX}/opt/${MY_PN}/${MY_PN}.sh" "${EPREFIX}/opt/bin/${MY_PN}"
+
+ exeinto "/opt/${MY_PN}/framework/bin"
+ doexe framework/bin/karaf
+
+ newicon framework/cytoscape_logo_512.png cytoscape_logo.png
+ make_desktop_entry ${MY_PN} CytoScape cytoscape_logo Science
+}
diff --git a/sci-biology/cytoscape-bin/metadata.xml b/sci-biology/cytoscape-bin/metadata.xml
new file mode 100644
index 0000000000..ba5084d0c1
--- /dev/null
+++ b/sci-biology/cytoscape-bin/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>andres.becerra@gmail.com</email>
+ <name>Andrés Becerra Sandoval</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>>Gentoo Biology Project</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>proxy-maint@gentoo.org</email>
+ <name>Proxy Maintainers</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] repo/proj/guru:master commit in: sci-biology/cytoscape-bin/
@ 2024-05-15 12:36 Julien Roy
0 siblings, 0 replies; 5+ messages in thread
From: Julien Roy @ 2024-05-15 12:36 UTC (permalink / raw
To: gentoo-commits
commit: 0b616c1310484ff25374a5a494808ebb17965976
Author: Lucio Sauer <watermanpaint <AT> posteo <DOT> net>
AuthorDate: Wed May 15 02:37:14 2024 +0000
Commit: Julien Roy <julien <AT> jroy <DOT> ca>
CommitDate: Wed May 15 02:37:20 2024 +0000
URL: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=0b616c13
sci-biology/cytoscape-bin: upgrade HOMEPAGE to https
Signed-off-by: Lucio Sauer <watermanpaint <AT> posteo.net>
sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild b/sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild
index caf507912c..458505567a 100644
--- a/sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild
+++ b/sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild
@@ -6,7 +6,7 @@ EAPI="8"
inherit desktop java-pkg-2
DESCRIPTION="A visualization platform for molecular interaction networks"
-HOMEPAGE="http://www.cytoscape.org/"
+HOMEPAGE="https://www.cytoscape.org/"
SRC_URI="https://github.com/cytoscape/cytoscape/releases/download/${PV}/cytoscape-unix-${PV}.tar.gz"
S="${WORKDIR}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] repo/proj/guru:master commit in: sci-biology/cytoscape-bin/
@ 2024-05-15 12:36 Julien Roy
0 siblings, 0 replies; 5+ messages in thread
From: Julien Roy @ 2024-05-15 12:36 UTC (permalink / raw
To: gentoo-commits
commit: 971c5f4e9e34bed5906ce1d002e960574ab89096
Author: Lucio Sauer <watermanpaint <AT> posteo <DOT> net>
AuthorDate: Wed May 15 02:36:26 2024 +0000
Commit: Julien Roy <julien <AT> jroy <DOT> ca>
CommitDate: Wed May 15 02:36:26 2024 +0000
URL: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=971c5f4e
sci-biology/cytoscape-bin: add github upstream metadata
Signed-off-by: Lucio Sauer <watermanpaint <AT> posteo.net>
sci-biology/cytoscape-bin/metadata.xml | 9 +++++++++
1 file changed, 9 insertions(+)
diff --git a/sci-biology/cytoscape-bin/metadata.xml b/sci-biology/cytoscape-bin/metadata.xml
index a471078e75..ca50e48720 100644
--- a/sci-biology/cytoscape-bin/metadata.xml
+++ b/sci-biology/cytoscape-bin/metadata.xml
@@ -5,4 +5,13 @@
<email>andres.becerra@gmail.com</email>
<name>Andrés Becerra Sandoval</name>
</maintainer>
+ <upstream>
+ <bugs-to>
+ https://cytoscape.org/bug-report.html
+ </bugs-to>
+ <changelog>
+ https://cytoscape.org/releasenotes.html
+ </changelog>
+ <remote-id type="github">cytoscape/cytoscape</remote-id>
+ </upstream>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] repo/proj/guru:master commit in: sci-biology/cytoscape-bin/
@ 2024-05-25 13:01 Julien Roy
0 siblings, 0 replies; 5+ messages in thread
From: Julien Roy @ 2024-05-25 13:01 UTC (permalink / raw
To: gentoo-commits
commit: b275387250b86a6212937bebc4b8b3c2cb033a24
Author: Andrés Becerra <andres.becerra <AT> gmail <DOT> com>
AuthorDate: Fri May 24 20:35:21 2024 +0000
Commit: Julien Roy <julien <AT> jroy <DOT> ca>
CommitDate: Fri May 24 20:35:21 2024 +0000
URL: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=b2753872
sci-biology/cytoscape-bin: fix https over http
Signed-off-by: Andrés Becerra <andres.becerra <AT> gmail.com>
sci-biology/cytoscape-bin/Manifest | 2 +-
sci-biology/cytoscape-bin/cytoscape-bin-3.10.2.ebuild | 6 +++---
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-biology/cytoscape-bin/Manifest b/sci-biology/cytoscape-bin/Manifest
index ff8bfb513..c2b056df9 100644
--- a/sci-biology/cytoscape-bin/Manifest
+++ b/sci-biology/cytoscape-bin/Manifest
@@ -1,3 +1,3 @@
DIST cytoscape-unix-3.10.2.tar.gz 342943928 BLAKE2B 8ed32c929cb0d3ef140b4dba3b0cb98eda507cf4d6daac3ec2d7c1fa5707bff1613366d0fb5f0b4c84b12a88bacb08694b1d653e315ac45b3e0d5d70fbf7f77b SHA512 b34f40f82ee8576c37ad2d64319aace8cbb83f9fc1ab9a7463e56163e54a4c5cd78683ccfac55947b93d31cc969f985f8908196b71d753f542e8c2278a229f6f
-EBUILD cytoscape-bin-3.10.2.ebuild 1006 BLAKE2B 6b2c29ecb6a4b829391e88727b36c76512b66dd7d20fab74138e81e6a7a92a9966f7df9f333823a4e3a261bdc51bc43f1b29055b389e8a260c57ec79a6c7bc37 SHA512 8866b8d340ab34458fbd55a612453109ed46651abe971eabe6ea74a8d0813a986a89a663d5b684321554c287a0091006e7816354e0710d2c4eaec08aabebf449
+EBUILD cytoscape-bin-3.10.2.ebuild 1007 BLAKE2B 18908907d00c212ade8ad0da94973edb4c09b52cb05891773b5d669c449f23d55c756713565941fa82a3297dbcdf1cc6e24a6678062ada0228a39d68db085d97 SHA512 22c3708957fc8ca96a08e7870b12a639ecdf46b1dd6bef342b217732c345c36524f51f2f287c4e3c450908080c6382956e9606603a1672d7652404a63ee75940
MISC metadata.xml 486 BLAKE2B 5b3d5ea0a680643513685b19379fa9d250a755fc6dd99c07e35689d1e14918c7d91b659b866ef0dc5631043f3e12a2d6770c320087b882e40a23f5bcbbc5b9fe SHA512 e27f3c8d6443c9f153d6921c242abaf10af9433d8c7c30fff1d0c441547bd19fe8aff1cf02f07ec204285c41d97a981872d9bd07af16ed2faff8280eaf84d967
diff --git a/sci-biology/cytoscape-bin/cytoscape-bin-3.10.2.ebuild b/sci-biology/cytoscape-bin/cytoscape-bin-3.10.2.ebuild
index 57fa16311..b1a1bfb8a 100644
--- a/sci-biology/cytoscape-bin/cytoscape-bin-3.10.2.ebuild
+++ b/sci-biology/cytoscape-bin/cytoscape-bin-3.10.2.ebuild
@@ -6,16 +6,16 @@ EAPI="8"
inherit desktop java-pkg-2
DESCRIPTION="A visualization platform for molecular interaction networks"
-HOMEPAGE="http://www.cytoscape.org/"
+HOMEPAGE="https://www.cytoscape.org/"
SRC_URI="https://github.com/cytoscape/cytoscape/releases/download/${PV}/cytoscape-unix-${PV}.tar.gz"
+S="${WORKDIR}"
+
LICENSE="LGPL-2.1"
SLOT="0"
KEYWORDS="~amd64 ~x86"
RDEPEND=">=virtual/jre-11-r2"
-S="${WORKDIR}"
-
src_install() {
MY_PN="cytoscape"
MYW="${WORKDIR}/${MY_PN}-unix-${PV}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] repo/proj/guru:master commit in: sci-biology/cytoscape-bin/
@ 2024-05-25 13:01 Julien Roy
0 siblings, 0 replies; 5+ messages in thread
From: Julien Roy @ 2024-05-25 13:01 UTC (permalink / raw
To: gentoo-commits
commit: fe4ab769d778e525f41048f07877c22ea35564a3
Author: Andrés Becerra <andres.becerra <AT> gmail <DOT> com>
AuthorDate: Fri May 24 20:21:21 2024 +0000
Commit: Julien Roy <julien <AT> jroy <DOT> ca>
CommitDate: Fri May 24 20:27:06 2024 +0000
URL: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=fe4ab769
sci-biology/cytoscape-bin: add 3.10.2, drop 3.10.1
Signed-off-by: Andrés Becerra <andres.becerra <AT> gmail.com>
sci-biology/cytoscape-bin/Manifest | 4 +++-
.../{cytoscape-bin-3.10.1.ebuild => cytoscape-bin-3.10.2.ebuild} | 8 ++++----
2 files changed, 7 insertions(+), 5 deletions(-)
diff --git a/sci-biology/cytoscape-bin/Manifest b/sci-biology/cytoscape-bin/Manifest
index cf3a195ac..ff8bfb513 100644
--- a/sci-biology/cytoscape-bin/Manifest
+++ b/sci-biology/cytoscape-bin/Manifest
@@ -1 +1,3 @@
-DIST cytoscape-unix-3.10.1.tar.gz 344323313 BLAKE2B ffb27144b9c717762c4b96ea192cbde5a83e0e6264022e59f007a5989d0ba636959e459361ccc36a38ffc5615074e644daef5835cb56040e8f6072e279569c59 SHA512 4b37e72e339a60a5275ab31f112af5b042e190c26d6557c66e9ff5bc0aff547b481548c66696442ea5ef8df4bc3c191ef0f3f675060d033c2535ac954567218e
+DIST cytoscape-unix-3.10.2.tar.gz 342943928 BLAKE2B 8ed32c929cb0d3ef140b4dba3b0cb98eda507cf4d6daac3ec2d7c1fa5707bff1613366d0fb5f0b4c84b12a88bacb08694b1d653e315ac45b3e0d5d70fbf7f77b SHA512 b34f40f82ee8576c37ad2d64319aace8cbb83f9fc1ab9a7463e56163e54a4c5cd78683ccfac55947b93d31cc969f985f8908196b71d753f542e8c2278a229f6f
+EBUILD cytoscape-bin-3.10.2.ebuild 1006 BLAKE2B 6b2c29ecb6a4b829391e88727b36c76512b66dd7d20fab74138e81e6a7a92a9966f7df9f333823a4e3a261bdc51bc43f1b29055b389e8a260c57ec79a6c7bc37 SHA512 8866b8d340ab34458fbd55a612453109ed46651abe971eabe6ea74a8d0813a986a89a663d5b684321554c287a0091006e7816354e0710d2c4eaec08aabebf449
+MISC metadata.xml 486 BLAKE2B 5b3d5ea0a680643513685b19379fa9d250a755fc6dd99c07e35689d1e14918c7d91b659b866ef0dc5631043f3e12a2d6770c320087b882e40a23f5bcbbc5b9fe SHA512 e27f3c8d6443c9f153d6921c242abaf10af9433d8c7c30fff1d0c441547bd19fe8aff1cf02f07ec204285c41d97a981872d9bd07af16ed2faff8280eaf84d967
diff --git a/sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild b/sci-biology/cytoscape-bin/cytoscape-bin-3.10.2.ebuild
similarity index 92%
rename from sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild
rename to sci-biology/cytoscape-bin/cytoscape-bin-3.10.2.ebuild
index 458505567..57fa16311 100644
--- a/sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild
+++ b/sci-biology/cytoscape-bin/cytoscape-bin-3.10.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI="8"
@@ -6,16 +6,16 @@ EAPI="8"
inherit desktop java-pkg-2
DESCRIPTION="A visualization platform for molecular interaction networks"
-HOMEPAGE="https://www.cytoscape.org/"
+HOMEPAGE="http://www.cytoscape.org/"
SRC_URI="https://github.com/cytoscape/cytoscape/releases/download/${PV}/cytoscape-unix-${PV}.tar.gz"
-S="${WORKDIR}"
-
LICENSE="LGPL-2.1"
SLOT="0"
KEYWORDS="~amd64 ~x86"
RDEPEND=">=virtual/jre-11-r2"
+S="${WORKDIR}"
+
src_install() {
MY_PN="cytoscape"
MYW="${WORKDIR}/${MY_PN}-unix-${PV}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
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