[gentoo-commits] proj/sci:master commit in: sci-biology/brkraw/, sci-biology/brkraw/files/

[gentoo-commits] proj/sci:master commit in: sci-biology/brkraw/, sci-biology/brkraw/files/

[Horea Christian]

commit:     2cd1c7c6d00b97ea4776eb6ba978d721fd39978c
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Nov 30 18:22:53 2023 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Nov 30 18:22:53 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=2cd1c7c6

sci-biology/brkraw: new package, add 0.3.11

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/brkraw/brkraw-0.3.11.ebuild            | 36 ++++++++++++++++++++++
 .../brkraw/files/brkraw-0.3.11-testexclusion.patch | 11 +++++++
 sci-biology/brkraw/metadata.xml                    | 16 ++++++++++
 3 files changed, 63 insertions(+)

diff --git a/sci-biology/brkraw/brkraw-0.3.11.ebuild b/sci-biology/brkraw/brkraw-0.3.11.ebuild
new file mode 100644
index 000000000..60a7767b1
--- /dev/null
+++ b/sci-biology/brkraw/brkraw-0.3.11.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..11} )
+
+DISTUTILS_USE_PEP517=setuptools
+
+inherit distutils-r1 pypi
+
+DESCRIPTION="Fast and easy statistical learning on NeuroImaging data"
+HOMEPAGE="https://github.com/BrkRaw/brkraw"
+SRC_URI="https://github.com/BrkRaw/brkraw/archive/refs/tags/${PV}.tar.gz -> ${P}.gh.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+# Strange test infrastructure involving dynamic download via make:
+# https://github.com/BrkRaw/brkraw/blob/main/.github/workflows/test.yml
+RESTRICT="test"
+
+RDEPEND="
+	>=dev-python/numpy-1.18[${PYTHON_USEDEP}]
+	>=dev-python/pillow-7.1.1[${PYTHON_USEDEP}]
+	>=dev-python/tqdm-4.45.0[${PYTHON_USEDEP}]
+	>=dev-python/openpyxl-3.0.3[${PYTHON_USEDEP}]
+	>=dev-python/xlrd-1.1.0[${PYTHON_USEDEP}]
+	>=dev-python/pandas-1[${PYTHON_USEDEP}]
+	>=sci-libs/nibabel-3.0.2[${PYTHON_USEDEP}]
+"
+
+PATCHES=( "${FILESDIR}/${P}-testexclusion.patch" )
+
+distutils_enable_tests pytest

diff --git a/sci-biology/brkraw/files/brkraw-0.3.11-testexclusion.patch b/sci-biology/brkraw/files/brkraw-0.3.11-testexclusion.patch
new file mode 100644
index 000000000..40cc8fc4a
--- /dev/null
+++ b/sci-biology/brkraw/files/brkraw-0.3.11-testexclusion.patch
@@ -0,0 +1,11 @@
+--- a/setup.py	2023-07-05 17:09:42.000000000 -0400
++++ b/setup.py	2023-11-28 12:38:07.726369571 -0500
+@@ -24,7 +24,7 @@
+       author_email=__email__,
+       url=__url__,
+       license='GNLv3',
+-      packages=find_packages(),
++      packages=find_packages(exclude=["tests", "tests.*"]),
+       install_requires=['nibabel>=3.0.2',
+                         'numpy>=1.18.0',
+                         'pandas>=1.0.0',

diff --git a/sci-biology/brkraw/metadata.xml b/sci-biology/brkraw/metadata.xml
new file mode 100644
index 000000000..5c436db45
--- /dev/null
+++ b/sci-biology/brkraw/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>gentoo@chymera.eu</email>
+		<name>Horea Christian</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci@gentoo.org</email>
+		<name>Gentoo Science Project</name>
+	</maintainer>
+	<upstream>
+		<remote-id type="github">BrkRaw/brkraw</remote-id>
+		<remote-id type="pypi">brkraw</remote-id>
+	</upstream>
+</pkgmetadata>