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Thu, 28 Sep 2023 16:43:18 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id AC79570 for ; Thu, 28 Sep 2023 16:43:16 +0000 (UTC) From: "Michał Górny" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Michał Górny" Message-ID: <1695919393.40a7e817c3ade89d662b4947398a61c24ac25139.mgorny@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: dev-python/scipy/ X-VCS-Repository: repo/gentoo X-VCS-Files: dev-python/scipy/Manifest dev-python/scipy/scipy-1.11.3.ebuild X-VCS-Directories: dev-python/scipy/ X-VCS-Committer: mgorny X-VCS-Committer-Name: Michał Górny X-VCS-Revision: 40a7e817c3ade89d662b4947398a61c24ac25139 X-VCS-Branch: master Date: Thu, 28 Sep 2023 16:43:16 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: fdc4979e-9f9b-4580-aa3c-dac5e74dc4dc X-Archives-Hash: 357d88546c5fe9f8cb48c381d83764f8 commit: 40a7e817c3ade89d662b4947398a61c24ac25139 Author: Michał Górny gentoo org> AuthorDate: Thu Sep 28 16:14:00 2023 +0000 Commit: Michał Górny gentoo org> CommitDate: Thu Sep 28 16:43:13 2023 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=40a7e817 dev-python/scipy: Bump to 1.11.3 Signed-off-by: Michał Górny gentoo.org> dev-python/scipy/Manifest | 1 + dev-python/scipy/scipy-1.11.3.ebuild | 129 +++++++++++++++++++++++++++++++++++ 2 files changed, 130 insertions(+) diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest index 4d500aaa007e..85dd8b3c9e2d 100644 --- a/dev-python/scipy/Manifest +++ b/dev-python/scipy/Manifest @@ -2,5 +2,6 @@ DIST scipy-1.10.1.tar.gz 42407997 BLAKE2B 807dceb1e056a1a2c0ec354e4e21f64e59cdab DIST scipy-1.11.0.tar.gz 56030121 BLAKE2B e700bf8f9cffa7bc0f4832722010dcf2e03d8f93d13534f7f85734394c02536c1427cae5a097b59616f0873ba941579fcf2efd0baafc2037d9eca1f93362d38b SHA512 248cfbbedba73925b0461bf0f96c4a11bd4cfc7849cb18c58f6405074796ab0efdc4f056c58d344cb8833c0d2c6425f84e7ac6fe958cf98b1cc0bf16e7ff2444 DIST scipy-1.11.1.tar.gz 56031509 BLAKE2B 456a80103f8c31c456f80e06b25d765f7ad5655dbdd49e99f476e78273f4291c578a8e99fda3f3a1e848c0e75e08629a09a8146b4a798e85edcaffb7ed1d34a9 SHA512 2859fc73c4fef713497f450b76a57d274bb46477a08ac909714823225f065a13c1e42a61ce67575cfc475e1e4612090cc4ca0920411fe32370c5b5c476352f97 DIST scipy-1.11.2.tar.gz 56045065 BLAKE2B c92a27ef7b560c17bea7dbbc5ca7e192cc7ee8297b65887c3bad50509cca0f83314b688e8c9ef14228c7891e4c16e9d45920de7cb39a0456c7712ae752839203 SHA512 f6902d48617827d01f69c057f3c4790c7388bc58df0791ade96e073740253bc0529475f9fc22d00c23c0b649acaeb820792528d3805d0ac68588c329aa87b3f2 +DIST scipy-1.11.3.tar.gz 56335652 BLAKE2B 2b35c24522b2bd498b4ebe84a854c8ec1e62917e7b899b3e3526abb9780c1e56f8e776a3bb1eab1bedb17a273fac881e5ffdaac808084a4f5a5f97428bff1029 SHA512 6491c4e479d9f4f02e677396a25ddca947a0dc6c009fc2ec34c658012a6224c0b535f14045bb011fbde9973ea987d184574ed64e6760c31798ec860eb0896fcf DIST scipy-html-1.10.1.zip 49191107 BLAKE2B 5163ae3a62745992bcf94ab02ca2bb13fcf6d2ae0eb2a113ba29bc37a8e8f40ec70e39fe16e6371ce0bc31d4c8f0f46746be91b4fe2ad41c68a985c6f00fb8e7 SHA512 f3252452d3bfd400890f29460de2f97bf72732e0fc864582e906b78808e856ead5b1bf97cba531f2150e396408e585499d127004231421d20108e96040316232 DIST scipy-html-1.11.0.zip 50421508 BLAKE2B cb5e4a4f8817a80f54ae73b4a47ba22d2438df46ebfe27ef5fdc2695fdd983226f4ccae925bf82b15d01ced4f4b6807384ecadac5e1aa7700aa887ad06b7d065 SHA512 33718bbd5e828687d93fccc441a53b6a2e8f54ac4952d3b69d4c4668f55cb6ef5aba33df9acda20b2400effa5ae71767b2a5602a365ad2045a6edd24ff89c253 diff --git a/dev-python/scipy/scipy-1.11.3.ebuild b/dev-python/scipy/scipy-1.11.3.ebuild new file mode 100644 index 000000000000..7dc5558d9dc2 --- /dev/null +++ b/dev-python/scipy/scipy-1.11.3.ebuild @@ -0,0 +1,129 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +FORTRAN_NEEDED=fortran +DISTUTILS_EXT=1 +DISTUTILS_USE_PEP517=meson-python +PYTHON_COMPAT=( python3_{10..11} ) +PYTHON_REQ_USE="threads(+)" + +inherit fortran-2 distutils-r1 multiprocessing + +DESCRIPTION="Scientific algorithms library for Python" +HOMEPAGE=" + https://scipy.org/ + https://github.com/scipy/scipy/ + https://pypi.org/project/scipy/ +" + +if [[ ${PV} == *9999* ]] ; then + inherit git-r3 + + # Need submodules, so git for now. + EGIT_REPO_URI="https://github.com/scipy/scipy" + EGIT_BRANCH="maintenance/$(ver_cut 1-2).x" + EGIT_SUBMODULES=( '*' ) +else + inherit pypi + + # Upstream is often behind with doc updates + #DOC_PV=${PV} + DOC_PV=1.11.0 + + SRC_URI+=" + doc? ( + https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip + )" + + if [[ ${PV} != *rc* ]] ; then + KEYWORDS="~amd64 ~arm ~arm64 -hppa ~ia64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86 ~arm64-macos ~x64-macos" + fi +fi + +LICENSE="BSD LGPL-2" +SLOT="0" +IUSE="doc +fortran test-rust" + +# umfpack is technically optional but it's preferred to have it available. +DEPEND=" + >=dev-python/numpy-1.21.6[lapack,${PYTHON_USEDEP}] + sci-libs/arpack:= + sci-libs/umfpack + virtual/cblas + >=virtual/lapack-3.8 +" +RDEPEND=" + ${DEPEND} + dev-python/pillow[${PYTHON_USEDEP}] +" +BDEPEND=" + dev-lang/swig + >=dev-python/cython-0.29.35[${PYTHON_USEDEP}] + >=dev-python/meson-python-0.12.1[${PYTHON_USEDEP}] + >=dev-python/pybind11-2.10.4[${PYTHON_USEDEP}] + >=dev-util/meson-1.1.0 + !kernel_Darwin? ( dev-util/patchelf ) + virtual/pkgconfig + doc? ( app-arch/unzip ) + fortran? ( dev-python/pythran[${PYTHON_USEDEP}] ) + test? ( + dev-python/pytest-xdist[${PYTHON_USEDEP}] + ) + test-rust? ( + dev-python/pooch[${PYTHON_USEDEP}] + ) +" + +distutils_enable_tests pytest + +src_unpack() { + default + + if use doc; then + unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die + fi +} + +python_configure_all() { + DISTUTILS_ARGS=( + -Dblas=blas + -Dlapack=lapack + -Duse-pythran=$(usex fortran true false) + ) +} + +python_test() { + cd "${BUILD_DIR}/install$(python_get_sitedir)" || die + + local EPYTEST_DESELECT=( + # Network + scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all + scipy/datasets/tests/test_data.py::TestDatasets::test_ascent + scipy/datasets/tests/test_data.py::TestDatasets::test_face + scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram + + # Precision issue with diff. blas? + scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799 + + # Crashes with assertion, not a regression + # https://github.com/scipy/scipy/issues/19321 + scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object + ) + local EPYTEST_IGNORE=() + + if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then + EPYTEST_IGNORE+=( + scipy/datasets/tests/test_data.py + ) + fi + + epytest -n "$(makeopts_jobs)" --dist=worksteal scipy +} + +python_install_all() { + use doc && local HTML_DOCS=( "${WORKDIR}"/html/. ) + + distutils-r1_python_install_all +}