* [gentoo-commits] proj/sci:master commit in: dev-python/tridesclous/
@ 2023-01-31 9:57 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2023-01-31 9:57 UTC (permalink / raw
To: gentoo-commits
commit: 2197df0e3de174258d330058ca961121c538784c
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue Jan 31 09:57:44 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jan 31 09:57:44 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2197df0e
dev-python/tridesclous: new package, add 1.6.4, 1.6.6
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/tridesclous/metadata.xml | 16 ++++
dev-python/tridesclous/tridesclous-1.6.4.ebuild | 101 ++++++++++++++++++++++++
dev-python/tridesclous/tridesclous-1.6.6.ebuild | 101 ++++++++++++++++++++++++
3 files changed, 218 insertions(+)
diff --git a/dev-python/tridesclous/metadata.xml b/dev-python/tridesclous/metadata.xml
new file mode 100644
index 000000000..819340cd1
--- /dev/null
+++ b/dev-python/tridesclous/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>gentoo@chymera.eu</email>
+ <name>Horea Christian</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci@gentoo.org</email>
+ <name>Gentoo Science Project</name>
+ </maintainer>
+ <upstream>
+ <remote-id type="github">tridesclous/tridesclous</remote-id>
+ <remote-id type="pypi">tridesclous</remote-id>
+ </upstream>
+</pkgmetadata>
diff --git a/dev-python/tridesclous/tridesclous-1.6.4.ebuild b/dev-python/tridesclous/tridesclous-1.6.4.ebuild
new file mode 100644
index 000000000..a65c30298
--- /dev/null
+++ b/dev-python/tridesclous/tridesclous-1.6.4.ebuild
@@ -0,0 +1,101 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..10} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="offline/online spike sorting"
+HOMEPAGE="https://github.com/tridesclous/tridesclous"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="gui test"
+
+RDEPEND="
+ <dev-python/numpy-1.24.0[${PYTHON_USEDEP}]
+ dev-python/cython[${PYTHON_USEDEP}]
+ dev-python/hdbscan[${PYTHON_USEDEP}]
+ dev-python/loky[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/neo[${PYTHON_USEDEP}]
+ dev-python/numba
+ dev-python/openpyxl[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
+ dev-python/seaborn[${PYTHON_USEDEP}]
+ dev-python/tqdm[${PYTHON_USEDEP}]
+ sci-libs/scikit-learn[${PYTHON_USEDEP}]
+ gui? (
+ dev-python/PyQt5[${PYTHON_USEDEP}]
+ )
+"
+
+distutils_enable_tests pytest
+
+# Network sandboxing, this is sadly more than half the test suite :(
+EPYTEST_DESELECT=(
+ tridesclous/tests/test_cleancluster.py::test_auto_split
+ tridesclous/tests/test_cleancluster.py::test_trash_not_aligned
+ tridesclous/tests/test_cleancluster.py::test_auto_merge
+ tridesclous/tests/test_cleancluster.py::test_trash_low_extremum
+ tridesclous/tests/test_cleancluster.py::test_trash_small_cluster
+ tridesclous/tests/test_cluster.py::test_sawchaincut
+ tridesclous/tests/test_cluster.py::test_pruningshears
+ tridesclous/tests/test_decomposition.py::test_all_decomposition
+ tridesclous/tests/test_export.py::test_export
+ tridesclous/tests/test_export.py::test_export_catalogue_spikes
+ tridesclous/tests/test_jobtools.py::test_run_parallel_signalprocessor
+ tridesclous/tests/test_matplotlibplot.py::test_plot_probe_geometry
+ tridesclous/tests/test_matplotlibplot.py::test_plot_signals
+ tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms_with_geometry
+ tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms
+ tridesclous/tests/test_matplotlibplot.py::test_plot_features_scatter_2d
+ tridesclous/tests/test_metrics.py::test_all_metrics
+ tridesclous/tests/test_metrics.py::test_cluster_ratio
+ tridesclous/tests/test_peeler.py::test_peeler_geometry
+ tridesclous/tests/test_peeler.py::test_peeler_geometry_cl
+ tridesclous/tests/test_peeler.py::test_peeler_empty_catalogue
+ tridesclous/tests/test_peeler.py::test_peeler_several_chunksize
+ tridesclous/tests/test_peeler.py::test_peeler_with_and_without_preprocessor
+ tridesclous/tests/test_peeler.py::test_export_spikes
+ tridesclous/tests/test_report.py::test_summary_catalogue_clusters
+ tridesclous/tests/test_report.py::test_summary_noise
+ tridesclous/tests/test_report.py::test_summary_after_peeler_clusters
+ tridesclous/tests/test_report.py::test_generate_report
+ tridesclous/tests/test_autoparams.py::test_get_auto_params
+ tridesclous/tests/test_catalogueconstructor.py::test_catalogue_constructor
+ tridesclous/tests/test_catalogueconstructor.py::test_make_catalogue
+ tridesclous/tests/test_catalogueconstructor.py::test_ratio_amplitude
+ tridesclous/tests/test_catalogueconstructor.py::test_create_savepoint_catalogue_constructor
+ tridesclous/tests/test_catalogueconstructor.py::test_feature_with_lda_selection
+ tridesclous/tests/test_cataloguetools.py::test_apply_all_catalogue_steps
+ tridesclous/tests/test_dataio.py::test_DataIO
+ tridesclous/tests/test_dataio.py::test_DataIO_probes
+ tridesclous/tests/test_datasets.py::test_download_dataset
+ tridesclous/tests/test_datasets.py::test_get_dataset
+ tridesclous/tests/test_datasource.py::test_RawDataSource
+ tridesclous/tests/test_datasource.py::test_NeoRawIOAggregator
+ tridesclous/tests/test_peakdetector.py::test_compare_offline_online_engines
+ tridesclous/tests/test_peakdetector.py::test_detect_geometrical_peaks
+ tridesclous/tests/test_peakdetector.py::test_peak_sign_symetry
+ tridesclous/tests/test_signalpreprocessor.py::test_compare_offline_online_engines
+ tridesclous/tests/test_signalpreprocessor.py::test_auto_pad_width
+ tridesclous/tests/test_tools.py::test_fix_prb_file_py2
+)
+
+python_test() {
+ local EPYTEST_IGNORE=(
+ tridesclous/online/tests/*
+ )
+ if use !gui ; then
+ local EPYTEST_IGNORE+=(
+ tridesclous/gui/*
+ )
+ fi
+ epytest
+}
diff --git a/dev-python/tridesclous/tridesclous-1.6.6.ebuild b/dev-python/tridesclous/tridesclous-1.6.6.ebuild
new file mode 100644
index 000000000..13697e657
--- /dev/null
+++ b/dev-python/tridesclous/tridesclous-1.6.6.ebuild
@@ -0,0 +1,101 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..10} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="offline/online spike sorting"
+HOMEPAGE="https://github.com/tridesclous/tridesclous"
+SRC_URI="https://github.com/tridesclous/tridesclous/archive/refs/tags/${PV}.tar.gz -> ${P}.gh.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="gui test"
+
+RDEPEND="
+ <dev-python/numpy-1.24.0[${PYTHON_USEDEP}]
+ dev-python/cython[${PYTHON_USEDEP}]
+ dev-python/hdbscan[${PYTHON_USEDEP}]
+ dev-python/loky[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/neo[${PYTHON_USEDEP}]
+ dev-python/numba
+ dev-python/openpyxl[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
+ dev-python/seaborn[${PYTHON_USEDEP}]
+ dev-python/tqdm[${PYTHON_USEDEP}]
+ sci-libs/scikit-learn[${PYTHON_USEDEP}]
+ gui? (
+ dev-python/PyQt5[${PYTHON_USEDEP}]
+ )
+"
+
+distutils_enable_tests pytest
+
+# Network sandboxing, this is sadly more than half the test suite :(
+EPYTEST_DESELECT=(
+ tridesclous/tests/test_cleancluster.py::test_auto_split
+ tridesclous/tests/test_cleancluster.py::test_trash_not_aligned
+ tridesclous/tests/test_cleancluster.py::test_auto_merge
+ tridesclous/tests/test_cleancluster.py::test_trash_low_extremum
+ tridesclous/tests/test_cleancluster.py::test_trash_small_cluster
+ tridesclous/tests/test_cluster.py::test_sawchaincut
+ tridesclous/tests/test_cluster.py::test_pruningshears
+ tridesclous/tests/test_decomposition.py::test_all_decomposition
+ tridesclous/tests/test_export.py::test_export
+ tridesclous/tests/test_export.py::test_export_catalogue_spikes
+ tridesclous/tests/test_jobtools.py::test_run_parallel_signalprocessor
+ tridesclous/tests/test_matplotlibplot.py::test_plot_probe_geometry
+ tridesclous/tests/test_matplotlibplot.py::test_plot_signals
+ tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms_with_geometry
+ tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms
+ tridesclous/tests/test_matplotlibplot.py::test_plot_features_scatter_2d
+ tridesclous/tests/test_metrics.py::test_all_metrics
+ tridesclous/tests/test_metrics.py::test_cluster_ratio
+ tridesclous/tests/test_peeler.py::test_peeler_geometry
+ tridesclous/tests/test_peeler.py::test_peeler_geometry_cl
+ tridesclous/tests/test_peeler.py::test_peeler_empty_catalogue
+ tridesclous/tests/test_peeler.py::test_peeler_several_chunksize
+ tridesclous/tests/test_peeler.py::test_peeler_with_and_without_preprocessor
+ tridesclous/tests/test_peeler.py::test_export_spikes
+ tridesclous/tests/test_report.py::test_summary_catalogue_clusters
+ tridesclous/tests/test_report.py::test_summary_noise
+ tridesclous/tests/test_report.py::test_summary_after_peeler_clusters
+ tridesclous/tests/test_report.py::test_generate_report
+ tridesclous/tests/test_autoparams.py::test_get_auto_params
+ tridesclous/tests/test_catalogueconstructor.py::test_catalogue_constructor
+ tridesclous/tests/test_catalogueconstructor.py::test_make_catalogue
+ tridesclous/tests/test_catalogueconstructor.py::test_ratio_amplitude
+ tridesclous/tests/test_catalogueconstructor.py::test_create_savepoint_catalogue_constructor
+ tridesclous/tests/test_catalogueconstructor.py::test_feature_with_lda_selection
+ tridesclous/tests/test_cataloguetools.py::test_apply_all_catalogue_steps
+ tridesclous/tests/test_dataio.py::test_DataIO
+ tridesclous/tests/test_dataio.py::test_DataIO_probes
+ tridesclous/tests/test_datasets.py::test_download_dataset
+ tridesclous/tests/test_datasets.py::test_get_dataset
+ tridesclous/tests/test_datasource.py::test_RawDataSource
+ tridesclous/tests/test_datasource.py::test_NeoRawIOAggregator
+ tridesclous/tests/test_peakdetector.py::test_compare_offline_online_engines
+ tridesclous/tests/test_peakdetector.py::test_detect_geometrical_peaks
+ tridesclous/tests/test_peakdetector.py::test_peak_sign_symetry
+ tridesclous/tests/test_signalpreprocessor.py::test_compare_offline_online_engines
+ tridesclous/tests/test_signalpreprocessor.py::test_auto_pad_width
+ tridesclous/tests/test_tools.py::test_fix_prb_file_py2
+)
+
+python_test() {
+ local EPYTEST_IGNORE=(
+ tridesclous/online/tests/*
+ )
+ if use !gui ; then
+ local EPYTEST_IGNORE+=(
+ tridesclous/gui/*
+ )
+ fi
+ epytest
+}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/tridesclous/
@ 2023-05-02 12:44 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2023-05-02 12:44 UTC (permalink / raw
To: gentoo-commits
commit: 307567906911d448d5dda6f0c9fc6f857dcede71
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May 2 12:44:02 2023 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May 2 12:44:02 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=30756790
dev-python/tridesclous: treeclean
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>
dev-python/tridesclous/metadata.xml | 16 ----
dev-python/tridesclous/tridesclous-1.6.4.ebuild | 101 ------------------------
dev-python/tridesclous/tridesclous-1.6.6.ebuild | 101 ------------------------
3 files changed, 218 deletions(-)
diff --git a/dev-python/tridesclous/metadata.xml b/dev-python/tridesclous/metadata.xml
deleted file mode 100644
index 819340cd1..000000000
--- a/dev-python/tridesclous/metadata.xml
+++ /dev/null
@@ -1,16 +0,0 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>gentoo@chymera.eu</email>
- <name>Horea Christian</name>
- </maintainer>
- <maintainer type="project">
- <email>sci@gentoo.org</email>
- <name>Gentoo Science Project</name>
- </maintainer>
- <upstream>
- <remote-id type="github">tridesclous/tridesclous</remote-id>
- <remote-id type="pypi">tridesclous</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/dev-python/tridesclous/tridesclous-1.6.4.ebuild b/dev-python/tridesclous/tridesclous-1.6.4.ebuild
deleted file mode 100644
index a65c30298..000000000
--- a/dev-python/tridesclous/tridesclous-1.6.4.ebuild
+++ /dev/null
@@ -1,101 +0,0 @@
-# Copyright 2021-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..10} )
-DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
-
-DESCRIPTION="offline/online spike sorting"
-HOMEPAGE="https://github.com/tridesclous/tridesclous"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="gui test"
-
-RDEPEND="
- <dev-python/numpy-1.24.0[${PYTHON_USEDEP}]
- dev-python/cython[${PYTHON_USEDEP}]
- dev-python/hdbscan[${PYTHON_USEDEP}]
- dev-python/loky[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/neo[${PYTHON_USEDEP}]
- dev-python/numba
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- dev-python/seaborn[${PYTHON_USEDEP}]
- dev-python/tqdm[${PYTHON_USEDEP}]
- sci-libs/scikit-learn[${PYTHON_USEDEP}]
- gui? (
- dev-python/PyQt5[${PYTHON_USEDEP}]
- )
-"
-
-distutils_enable_tests pytest
-
-# Network sandboxing, this is sadly more than half the test suite :(
-EPYTEST_DESELECT=(
- tridesclous/tests/test_cleancluster.py::test_auto_split
- tridesclous/tests/test_cleancluster.py::test_trash_not_aligned
- tridesclous/tests/test_cleancluster.py::test_auto_merge
- tridesclous/tests/test_cleancluster.py::test_trash_low_extremum
- tridesclous/tests/test_cleancluster.py::test_trash_small_cluster
- tridesclous/tests/test_cluster.py::test_sawchaincut
- tridesclous/tests/test_cluster.py::test_pruningshears
- tridesclous/tests/test_decomposition.py::test_all_decomposition
- tridesclous/tests/test_export.py::test_export
- tridesclous/tests/test_export.py::test_export_catalogue_spikes
- tridesclous/tests/test_jobtools.py::test_run_parallel_signalprocessor
- tridesclous/tests/test_matplotlibplot.py::test_plot_probe_geometry
- tridesclous/tests/test_matplotlibplot.py::test_plot_signals
- tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms_with_geometry
- tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms
- tridesclous/tests/test_matplotlibplot.py::test_plot_features_scatter_2d
- tridesclous/tests/test_metrics.py::test_all_metrics
- tridesclous/tests/test_metrics.py::test_cluster_ratio
- tridesclous/tests/test_peeler.py::test_peeler_geometry
- tridesclous/tests/test_peeler.py::test_peeler_geometry_cl
- tridesclous/tests/test_peeler.py::test_peeler_empty_catalogue
- tridesclous/tests/test_peeler.py::test_peeler_several_chunksize
- tridesclous/tests/test_peeler.py::test_peeler_with_and_without_preprocessor
- tridesclous/tests/test_peeler.py::test_export_spikes
- tridesclous/tests/test_report.py::test_summary_catalogue_clusters
- tridesclous/tests/test_report.py::test_summary_noise
- tridesclous/tests/test_report.py::test_summary_after_peeler_clusters
- tridesclous/tests/test_report.py::test_generate_report
- tridesclous/tests/test_autoparams.py::test_get_auto_params
- tridesclous/tests/test_catalogueconstructor.py::test_catalogue_constructor
- tridesclous/tests/test_catalogueconstructor.py::test_make_catalogue
- tridesclous/tests/test_catalogueconstructor.py::test_ratio_amplitude
- tridesclous/tests/test_catalogueconstructor.py::test_create_savepoint_catalogue_constructor
- tridesclous/tests/test_catalogueconstructor.py::test_feature_with_lda_selection
- tridesclous/tests/test_cataloguetools.py::test_apply_all_catalogue_steps
- tridesclous/tests/test_dataio.py::test_DataIO
- tridesclous/tests/test_dataio.py::test_DataIO_probes
- tridesclous/tests/test_datasets.py::test_download_dataset
- tridesclous/tests/test_datasets.py::test_get_dataset
- tridesclous/tests/test_datasource.py::test_RawDataSource
- tridesclous/tests/test_datasource.py::test_NeoRawIOAggregator
- tridesclous/tests/test_peakdetector.py::test_compare_offline_online_engines
- tridesclous/tests/test_peakdetector.py::test_detect_geometrical_peaks
- tridesclous/tests/test_peakdetector.py::test_peak_sign_symetry
- tridesclous/tests/test_signalpreprocessor.py::test_compare_offline_online_engines
- tridesclous/tests/test_signalpreprocessor.py::test_auto_pad_width
- tridesclous/tests/test_tools.py::test_fix_prb_file_py2
-)
-
-python_test() {
- local EPYTEST_IGNORE=(
- tridesclous/online/tests/*
- )
- if use !gui ; then
- local EPYTEST_IGNORE+=(
- tridesclous/gui/*
- )
- fi
- epytest
-}
diff --git a/dev-python/tridesclous/tridesclous-1.6.6.ebuild b/dev-python/tridesclous/tridesclous-1.6.6.ebuild
deleted file mode 100644
index 13697e657..000000000
--- a/dev-python/tridesclous/tridesclous-1.6.6.ebuild
+++ /dev/null
@@ -1,101 +0,0 @@
-# Copyright 2021-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..10} )
-DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
-
-DESCRIPTION="offline/online spike sorting"
-HOMEPAGE="https://github.com/tridesclous/tridesclous"
-SRC_URI="https://github.com/tridesclous/tridesclous/archive/refs/tags/${PV}.tar.gz -> ${P}.gh.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="gui test"
-
-RDEPEND="
- <dev-python/numpy-1.24.0[${PYTHON_USEDEP}]
- dev-python/cython[${PYTHON_USEDEP}]
- dev-python/hdbscan[${PYTHON_USEDEP}]
- dev-python/loky[${PYTHON_USEDEP}]
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/neo[${PYTHON_USEDEP}]
- dev-python/numba
- dev-python/openpyxl[${PYTHON_USEDEP}]
- dev-python/pandas[${PYTHON_USEDEP}]
- dev-python/scipy[${PYTHON_USEDEP}]
- dev-python/seaborn[${PYTHON_USEDEP}]
- dev-python/tqdm[${PYTHON_USEDEP}]
- sci-libs/scikit-learn[${PYTHON_USEDEP}]
- gui? (
- dev-python/PyQt5[${PYTHON_USEDEP}]
- )
-"
-
-distutils_enable_tests pytest
-
-# Network sandboxing, this is sadly more than half the test suite :(
-EPYTEST_DESELECT=(
- tridesclous/tests/test_cleancluster.py::test_auto_split
- tridesclous/tests/test_cleancluster.py::test_trash_not_aligned
- tridesclous/tests/test_cleancluster.py::test_auto_merge
- tridesclous/tests/test_cleancluster.py::test_trash_low_extremum
- tridesclous/tests/test_cleancluster.py::test_trash_small_cluster
- tridesclous/tests/test_cluster.py::test_sawchaincut
- tridesclous/tests/test_cluster.py::test_pruningshears
- tridesclous/tests/test_decomposition.py::test_all_decomposition
- tridesclous/tests/test_export.py::test_export
- tridesclous/tests/test_export.py::test_export_catalogue_spikes
- tridesclous/tests/test_jobtools.py::test_run_parallel_signalprocessor
- tridesclous/tests/test_matplotlibplot.py::test_plot_probe_geometry
- tridesclous/tests/test_matplotlibplot.py::test_plot_signals
- tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms_with_geometry
- tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms
- tridesclous/tests/test_matplotlibplot.py::test_plot_features_scatter_2d
- tridesclous/tests/test_metrics.py::test_all_metrics
- tridesclous/tests/test_metrics.py::test_cluster_ratio
- tridesclous/tests/test_peeler.py::test_peeler_geometry
- tridesclous/tests/test_peeler.py::test_peeler_geometry_cl
- tridesclous/tests/test_peeler.py::test_peeler_empty_catalogue
- tridesclous/tests/test_peeler.py::test_peeler_several_chunksize
- tridesclous/tests/test_peeler.py::test_peeler_with_and_without_preprocessor
- tridesclous/tests/test_peeler.py::test_export_spikes
- tridesclous/tests/test_report.py::test_summary_catalogue_clusters
- tridesclous/tests/test_report.py::test_summary_noise
- tridesclous/tests/test_report.py::test_summary_after_peeler_clusters
- tridesclous/tests/test_report.py::test_generate_report
- tridesclous/tests/test_autoparams.py::test_get_auto_params
- tridesclous/tests/test_catalogueconstructor.py::test_catalogue_constructor
- tridesclous/tests/test_catalogueconstructor.py::test_make_catalogue
- tridesclous/tests/test_catalogueconstructor.py::test_ratio_amplitude
- tridesclous/tests/test_catalogueconstructor.py::test_create_savepoint_catalogue_constructor
- tridesclous/tests/test_catalogueconstructor.py::test_feature_with_lda_selection
- tridesclous/tests/test_cataloguetools.py::test_apply_all_catalogue_steps
- tridesclous/tests/test_dataio.py::test_DataIO
- tridesclous/tests/test_dataio.py::test_DataIO_probes
- tridesclous/tests/test_datasets.py::test_download_dataset
- tridesclous/tests/test_datasets.py::test_get_dataset
- tridesclous/tests/test_datasource.py::test_RawDataSource
- tridesclous/tests/test_datasource.py::test_NeoRawIOAggregator
- tridesclous/tests/test_peakdetector.py::test_compare_offline_online_engines
- tridesclous/tests/test_peakdetector.py::test_detect_geometrical_peaks
- tridesclous/tests/test_peakdetector.py::test_peak_sign_symetry
- tridesclous/tests/test_signalpreprocessor.py::test_compare_offline_online_engines
- tridesclous/tests/test_signalpreprocessor.py::test_auto_pad_width
- tridesclous/tests/test_tools.py::test_fix_prb_file_py2
-)
-
-python_test() {
- local EPYTEST_IGNORE=(
- tridesclous/online/tests/*
- )
- if use !gui ; then
- local EPYTEST_IGNORE+=(
- tridesclous/gui/*
- )
- fi
- epytest
-}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/tridesclous/
@ 2023-05-02 22:43 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2023-05-02 22:43 UTC (permalink / raw
To: gentoo-commits
commit: a3a3d9a8310e1f3915f520463d468b80bb765f49
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue May 2 22:42:42 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue May 2 22:42:42 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a3a3d9a8
dev-python/tridesclous: enable py3.11
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/tridesclous/tridesclous-1.6.4.ebuild | 2 +-
dev-python/tridesclous/tridesclous-1.6.6.ebuild | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/dev-python/tridesclous/tridesclous-1.6.4.ebuild b/dev-python/tridesclous/tridesclous-1.6.4.ebuild
index a65c30298..23e178c05 100644
--- a/dev-python/tridesclous/tridesclous-1.6.4.ebuild
+++ b/dev-python/tridesclous/tridesclous-1.6.4.ebuild
@@ -3,7 +3,7 @@
EAPI=8
-PYTHON_COMPAT=( python3_{10..10} )
+PYTHON_COMPAT=( python3_{10..11} )
DISTUTILS_USE_PEP517=setuptools
inherit distutils-r1
diff --git a/dev-python/tridesclous/tridesclous-1.6.6.ebuild b/dev-python/tridesclous/tridesclous-1.6.6.ebuild
index 13697e657..fb401397f 100644
--- a/dev-python/tridesclous/tridesclous-1.6.6.ebuild
+++ b/dev-python/tridesclous/tridesclous-1.6.6.ebuild
@@ -3,7 +3,7 @@
EAPI=8
-PYTHON_COMPAT=( python3_{10..10} )
+PYTHON_COMPAT=( python3_{10..11} )
DISTUTILS_USE_PEP517=setuptools
inherit distutils-r1
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/tridesclous/
@ 2023-05-02 22:43 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2023-05-02 22:43 UTC (permalink / raw
To: gentoo-commits
commit: dd201a556f2e895f686fd3d3ce7513c0604572ea
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue May 2 22:40:38 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue May 2 22:41:03 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=dd201a55
dev-python/tridesclous: brought back
This reverts commit 307567906911d448d5dda6f0c9fc6f857dcede71.
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/tridesclous/metadata.xml | 16 ++++
dev-python/tridesclous/tridesclous-1.6.4.ebuild | 101 ++++++++++++++++++++++++
dev-python/tridesclous/tridesclous-1.6.6.ebuild | 101 ++++++++++++++++++++++++
3 files changed, 218 insertions(+)
diff --git a/dev-python/tridesclous/metadata.xml b/dev-python/tridesclous/metadata.xml
new file mode 100644
index 000000000..819340cd1
--- /dev/null
+++ b/dev-python/tridesclous/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>gentoo@chymera.eu</email>
+ <name>Horea Christian</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci@gentoo.org</email>
+ <name>Gentoo Science Project</name>
+ </maintainer>
+ <upstream>
+ <remote-id type="github">tridesclous/tridesclous</remote-id>
+ <remote-id type="pypi">tridesclous</remote-id>
+ </upstream>
+</pkgmetadata>
diff --git a/dev-python/tridesclous/tridesclous-1.6.4.ebuild b/dev-python/tridesclous/tridesclous-1.6.4.ebuild
new file mode 100644
index 000000000..a65c30298
--- /dev/null
+++ b/dev-python/tridesclous/tridesclous-1.6.4.ebuild
@@ -0,0 +1,101 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..10} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="offline/online spike sorting"
+HOMEPAGE="https://github.com/tridesclous/tridesclous"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="gui test"
+
+RDEPEND="
+ <dev-python/numpy-1.24.0[${PYTHON_USEDEP}]
+ dev-python/cython[${PYTHON_USEDEP}]
+ dev-python/hdbscan[${PYTHON_USEDEP}]
+ dev-python/loky[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/neo[${PYTHON_USEDEP}]
+ dev-python/numba
+ dev-python/openpyxl[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
+ dev-python/seaborn[${PYTHON_USEDEP}]
+ dev-python/tqdm[${PYTHON_USEDEP}]
+ sci-libs/scikit-learn[${PYTHON_USEDEP}]
+ gui? (
+ dev-python/PyQt5[${PYTHON_USEDEP}]
+ )
+"
+
+distutils_enable_tests pytest
+
+# Network sandboxing, this is sadly more than half the test suite :(
+EPYTEST_DESELECT=(
+ tridesclous/tests/test_cleancluster.py::test_auto_split
+ tridesclous/tests/test_cleancluster.py::test_trash_not_aligned
+ tridesclous/tests/test_cleancluster.py::test_auto_merge
+ tridesclous/tests/test_cleancluster.py::test_trash_low_extremum
+ tridesclous/tests/test_cleancluster.py::test_trash_small_cluster
+ tridesclous/tests/test_cluster.py::test_sawchaincut
+ tridesclous/tests/test_cluster.py::test_pruningshears
+ tridesclous/tests/test_decomposition.py::test_all_decomposition
+ tridesclous/tests/test_export.py::test_export
+ tridesclous/tests/test_export.py::test_export_catalogue_spikes
+ tridesclous/tests/test_jobtools.py::test_run_parallel_signalprocessor
+ tridesclous/tests/test_matplotlibplot.py::test_plot_probe_geometry
+ tridesclous/tests/test_matplotlibplot.py::test_plot_signals
+ tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms_with_geometry
+ tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms
+ tridesclous/tests/test_matplotlibplot.py::test_plot_features_scatter_2d
+ tridesclous/tests/test_metrics.py::test_all_metrics
+ tridesclous/tests/test_metrics.py::test_cluster_ratio
+ tridesclous/tests/test_peeler.py::test_peeler_geometry
+ tridesclous/tests/test_peeler.py::test_peeler_geometry_cl
+ tridesclous/tests/test_peeler.py::test_peeler_empty_catalogue
+ tridesclous/tests/test_peeler.py::test_peeler_several_chunksize
+ tridesclous/tests/test_peeler.py::test_peeler_with_and_without_preprocessor
+ tridesclous/tests/test_peeler.py::test_export_spikes
+ tridesclous/tests/test_report.py::test_summary_catalogue_clusters
+ tridesclous/tests/test_report.py::test_summary_noise
+ tridesclous/tests/test_report.py::test_summary_after_peeler_clusters
+ tridesclous/tests/test_report.py::test_generate_report
+ tridesclous/tests/test_autoparams.py::test_get_auto_params
+ tridesclous/tests/test_catalogueconstructor.py::test_catalogue_constructor
+ tridesclous/tests/test_catalogueconstructor.py::test_make_catalogue
+ tridesclous/tests/test_catalogueconstructor.py::test_ratio_amplitude
+ tridesclous/tests/test_catalogueconstructor.py::test_create_savepoint_catalogue_constructor
+ tridesclous/tests/test_catalogueconstructor.py::test_feature_with_lda_selection
+ tridesclous/tests/test_cataloguetools.py::test_apply_all_catalogue_steps
+ tridesclous/tests/test_dataio.py::test_DataIO
+ tridesclous/tests/test_dataio.py::test_DataIO_probes
+ tridesclous/tests/test_datasets.py::test_download_dataset
+ tridesclous/tests/test_datasets.py::test_get_dataset
+ tridesclous/tests/test_datasource.py::test_RawDataSource
+ tridesclous/tests/test_datasource.py::test_NeoRawIOAggregator
+ tridesclous/tests/test_peakdetector.py::test_compare_offline_online_engines
+ tridesclous/tests/test_peakdetector.py::test_detect_geometrical_peaks
+ tridesclous/tests/test_peakdetector.py::test_peak_sign_symetry
+ tridesclous/tests/test_signalpreprocessor.py::test_compare_offline_online_engines
+ tridesclous/tests/test_signalpreprocessor.py::test_auto_pad_width
+ tridesclous/tests/test_tools.py::test_fix_prb_file_py2
+)
+
+python_test() {
+ local EPYTEST_IGNORE=(
+ tridesclous/online/tests/*
+ )
+ if use !gui ; then
+ local EPYTEST_IGNORE+=(
+ tridesclous/gui/*
+ )
+ fi
+ epytest
+}
diff --git a/dev-python/tridesclous/tridesclous-1.6.6.ebuild b/dev-python/tridesclous/tridesclous-1.6.6.ebuild
new file mode 100644
index 000000000..13697e657
--- /dev/null
+++ b/dev-python/tridesclous/tridesclous-1.6.6.ebuild
@@ -0,0 +1,101 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..10} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="offline/online spike sorting"
+HOMEPAGE="https://github.com/tridesclous/tridesclous"
+SRC_URI="https://github.com/tridesclous/tridesclous/archive/refs/tags/${PV}.tar.gz -> ${P}.gh.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="gui test"
+
+RDEPEND="
+ <dev-python/numpy-1.24.0[${PYTHON_USEDEP}]
+ dev-python/cython[${PYTHON_USEDEP}]
+ dev-python/hdbscan[${PYTHON_USEDEP}]
+ dev-python/loky[${PYTHON_USEDEP}]
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/neo[${PYTHON_USEDEP}]
+ dev-python/numba
+ dev-python/openpyxl[${PYTHON_USEDEP}]
+ dev-python/pandas[${PYTHON_USEDEP}]
+ dev-python/scipy[${PYTHON_USEDEP}]
+ dev-python/seaborn[${PYTHON_USEDEP}]
+ dev-python/tqdm[${PYTHON_USEDEP}]
+ sci-libs/scikit-learn[${PYTHON_USEDEP}]
+ gui? (
+ dev-python/PyQt5[${PYTHON_USEDEP}]
+ )
+"
+
+distutils_enable_tests pytest
+
+# Network sandboxing, this is sadly more than half the test suite :(
+EPYTEST_DESELECT=(
+ tridesclous/tests/test_cleancluster.py::test_auto_split
+ tridesclous/tests/test_cleancluster.py::test_trash_not_aligned
+ tridesclous/tests/test_cleancluster.py::test_auto_merge
+ tridesclous/tests/test_cleancluster.py::test_trash_low_extremum
+ tridesclous/tests/test_cleancluster.py::test_trash_small_cluster
+ tridesclous/tests/test_cluster.py::test_sawchaincut
+ tridesclous/tests/test_cluster.py::test_pruningshears
+ tridesclous/tests/test_decomposition.py::test_all_decomposition
+ tridesclous/tests/test_export.py::test_export
+ tridesclous/tests/test_export.py::test_export_catalogue_spikes
+ tridesclous/tests/test_jobtools.py::test_run_parallel_signalprocessor
+ tridesclous/tests/test_matplotlibplot.py::test_plot_probe_geometry
+ tridesclous/tests/test_matplotlibplot.py::test_plot_signals
+ tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms_with_geometry
+ tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms
+ tridesclous/tests/test_matplotlibplot.py::test_plot_features_scatter_2d
+ tridesclous/tests/test_metrics.py::test_all_metrics
+ tridesclous/tests/test_metrics.py::test_cluster_ratio
+ tridesclous/tests/test_peeler.py::test_peeler_geometry
+ tridesclous/tests/test_peeler.py::test_peeler_geometry_cl
+ tridesclous/tests/test_peeler.py::test_peeler_empty_catalogue
+ tridesclous/tests/test_peeler.py::test_peeler_several_chunksize
+ tridesclous/tests/test_peeler.py::test_peeler_with_and_without_preprocessor
+ tridesclous/tests/test_peeler.py::test_export_spikes
+ tridesclous/tests/test_report.py::test_summary_catalogue_clusters
+ tridesclous/tests/test_report.py::test_summary_noise
+ tridesclous/tests/test_report.py::test_summary_after_peeler_clusters
+ tridesclous/tests/test_report.py::test_generate_report
+ tridesclous/tests/test_autoparams.py::test_get_auto_params
+ tridesclous/tests/test_catalogueconstructor.py::test_catalogue_constructor
+ tridesclous/tests/test_catalogueconstructor.py::test_make_catalogue
+ tridesclous/tests/test_catalogueconstructor.py::test_ratio_amplitude
+ tridesclous/tests/test_catalogueconstructor.py::test_create_savepoint_catalogue_constructor
+ tridesclous/tests/test_catalogueconstructor.py::test_feature_with_lda_selection
+ tridesclous/tests/test_cataloguetools.py::test_apply_all_catalogue_steps
+ tridesclous/tests/test_dataio.py::test_DataIO
+ tridesclous/tests/test_dataio.py::test_DataIO_probes
+ tridesclous/tests/test_datasets.py::test_download_dataset
+ tridesclous/tests/test_datasets.py::test_get_dataset
+ tridesclous/tests/test_datasource.py::test_RawDataSource
+ tridesclous/tests/test_datasource.py::test_NeoRawIOAggregator
+ tridesclous/tests/test_peakdetector.py::test_compare_offline_online_engines
+ tridesclous/tests/test_peakdetector.py::test_detect_geometrical_peaks
+ tridesclous/tests/test_peakdetector.py::test_peak_sign_symetry
+ tridesclous/tests/test_signalpreprocessor.py::test_compare_offline_online_engines
+ tridesclous/tests/test_signalpreprocessor.py::test_auto_pad_width
+ tridesclous/tests/test_tools.py::test_fix_prb_file_py2
+)
+
+python_test() {
+ local EPYTEST_IGNORE=(
+ tridesclous/online/tests/*
+ )
+ if use !gui ; then
+ local EPYTEST_IGNORE+=(
+ tridesclous/gui/*
+ )
+ fi
+ epytest
+}
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-python/tridesclous/
@ 2023-05-02 22:43 Horea Christian
0 siblings, 0 replies; 5+ messages in thread
From: Horea Christian @ 2023-05-02 22:43 UTC (permalink / raw
To: gentoo-commits
commit: e22ed0322c8da5691ef098525a1b3e4b88e3705f
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Tue May 2 22:43:05 2023 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue May 2 22:43:05 2023 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e22ed032
dev-python/tridesclous: update SRC_URI
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
dev-python/tridesclous/tridesclous-1.6.4.ebuild | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/dev-python/tridesclous/tridesclous-1.6.4.ebuild b/dev-python/tridesclous/tridesclous-1.6.4.ebuild
index 23e178c05..131156160 100644
--- a/dev-python/tridesclous/tridesclous-1.6.4.ebuild
+++ b/dev-python/tridesclous/tridesclous-1.6.4.ebuild
@@ -5,11 +5,10 @@ EAPI=8
PYTHON_COMPAT=( python3_{10..11} )
DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
+inherit distutils-r1 pypi
DESCRIPTION="offline/online spike sorting"
HOMEPAGE="https://github.com/tridesclous/tridesclous"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
^ permalink raw reply related [flat|nested] 5+ messages in thread
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