[gentoo-commits] repo/gentoo:master commit in: dev-python/scipy/

["Michał Górny" <mgorny@gentoo.org>]

commit:     3b20b92e60263eb68273875eb39ccc33dd8a4d2b
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 20 05:24:56 2023 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Mon Feb 20 06:23:58 2023 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3b20b92e

dev-python/scipy: Bump to 1.10.1

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scipy/Manifest            |   2 +
 dev-python/scipy/scipy-1.10.1.ebuild | 123 +++++++++++++++++++++++++++++++++++
 2 files changed, 125 insertions(+)

diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest
index 0ad24744d78f..bf48763a7d9e 100644
--- a/dev-python/scipy/Manifest
+++ b/dev-python/scipy/Manifest
@@ -1,6 +1,8 @@
 DIST scipy-1.10.0.tar.gz 42398693 BLAKE2B fc2c1ef997fb14716453d94a6d12f8cbdfb742c99bec2c5c504a70248217e44d84b3326304e7bfafd3a52b968de3404b0a084d1e8043295842d01f4337732d91 SHA512 13fec0a2c24b90617ad4701c43c54757c91d2c62ca4b9ea5e5c5d130177ba4d2bb8687aae9057b58c26d1a77e4291164bad7ba9e21352669c07ba18bf539ad32
+DIST scipy-1.10.1.tar.gz 42407997 BLAKE2B 807dceb1e056a1a2c0ec354e4e21f64e59cdab9eaf286cec3783bb93bf80efa00a71e7bd8d1898e8a2fdf86b614f035a0a97436dc4515574d73d9d4521824316 SHA512 767e1dee6285d98e4d58d8d8d1e3654b00e3216e9ad55455fc9473f1d044bef80ecce749bcd24d8f331367b882c9c3e6b652a6e901bb4296ddc7cc44699215b6
 DIST scipy-1.9.2.tar.gz 42068300 BLAKE2B 0962115990a12339d8b87eabbee02d52a52e57259fbe2e74884fa2f08d66d8b7505f84561f643b539603bc8bf4ef3bf73c3d908453fbb0c99f732c3a81f8a328 SHA512 5f8667aa66aa0b5fad689d960f742874ce09f830bfd5aa241917526f153fbc09c7f709bc84113f83283fcbb8a47113eb215478d9c3473f76d8f7dbf0989429a2
 DIST scipy-1.9.3.tar.gz 42075414 BLAKE2B f19e829d26a5673cccb69bce43a9142637f42a9ec462a3fd2ea44b62564cff6fb27a4deaccc59e0e738cc0c997b0a7de948bf9f2db6fa7896323405a072e0111 SHA512 119f9a5e1ce3b4268ba38a0eb82dff78837593d9a5c5e464663925a4b3b1de060201fe568236e19ed0996a045754333c580e181c4cdec2cc707e57060f59364e
 DIST scipy-html-1.10.0.zip 65656379 BLAKE2B 4a4f1e428bc2355f32be05e35634e5aaccb0938f170ee247931a892cf7ab59b3a9ab952060e98936e153bed752c29c01ed34eba02188b3514de7607285c01d08 SHA512 3bda526f209905355b3f87ba1529b9f45c3580ce7d9b80a63931871dab1542347f243c9f688854cb67d575e9a645ec89105775accdc746fc290113f28978b73b
+DIST scipy-html-1.10.1.zip 49191107 BLAKE2B 5163ae3a62745992bcf94ab02ca2bb13fcf6d2ae0eb2a113ba29bc37a8e8f40ec70e39fe16e6371ce0bc31d4c8f0f46746be91b4fe2ad41c68a985c6f00fb8e7 SHA512 f3252452d3bfd400890f29460de2f97bf72732e0fc864582e906b78808e856ead5b1bf97cba531f2150e396408e585499d127004231421d20108e96040316232
 DIST scipy-html-1.8.1.zip 37060661 BLAKE2B 2fa617c58eb47463f8a61f9798b32c6da255d26b8e86c1558e427a715093f5a29ced3847ab6ecfe88ce1017664f36ac3e9fa9bbf72ede7e0fd3812b5f41fe933 SHA512 95153dc1f404aa64898a700c94c0deea3ca842c3152167d0987edabcf4a8eba16b6c8e6bc38a6775a849dc621e6a21434baf53d1669b1865fa5049cffa4387ac
 DIST scipy-ref-1.8.1.pdf 35025868 BLAKE2B 9221755d2dc69b8623271f75ff3078a0a4410fe9ff69ee317b40bf145af7da21a7f5f4b6b67820d8bb2878f83b7014f1ea7c2f0e026afb716da0479d394505e2 SHA512 8f27dcb9dd1030e15266389af21a1475ecfec5ea777fb2dbcf8db8d3398ac6e45c7040b8d6dbaffd29be3920925427be7c55efdc8094d670c857edfdab7f7728

diff --git a/dev-python/scipy/scipy-1.10.1.ebuild b/dev-python/scipy/scipy-1.10.1.ebuild
new file mode 100644
index 000000000000..b33ee1b14a67
--- /dev/null
+++ b/dev-python/scipy/scipy-1.10.1.ebuild
@@ -0,0 +1,123 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+FORTRAN_NEEDED=fortran
+DISTUTILS_USE_PEP517=meson-python
+PYTHON_COMPAT=( python3_{9..11} )
+PYTHON_REQ_USE="threads(+)"
+
+inherit fortran-2 distutils-r1 multiprocessing
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="
+	https://scipy.org/
+	https://github.com/scipy/scipy/
+	https://pypi.org/project/scipy/
+"
+
+if [[ ${PV} == *9999* ]] ; then
+	inherit git-r3
+
+	# Need submodules, so git for now.
+	EGIT_REPO_URI="https://github.com/scipy/scipy"
+	EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
+	EGIT_SUBMODULES=( '*' )
+else
+	inherit pypi
+
+	# Upstream is often behind with doc updates
+	DOC_PV=${PV}
+
+	SRC_URI+="
+		doc? (
+			https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
+		)"
+
+	if [[ ${PV} != *rc* ]] ; then
+		KEYWORDS="~amd64 ~arm ~arm64 -hppa ~ppc ~ppc64 ~riscv ~sparc ~x86"
+	fi
+fi
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+IUSE="doc +fortran test-rust"
+
+# umfpack is technically optional but it's preferred to have it available.
+DEPEND="
+	>=dev-python/numpy-1.19.5[lapack,${PYTHON_USEDEP}]
+	sci-libs/arpack:=
+	sci-libs/umfpack
+	virtual/cblas
+	>=virtual/lapack-3.8
+"
+RDEPEND="
+	${DEPEND}
+	dev-python/pillow[${PYTHON_USEDEP}]
+"
+BDEPEND="
+	dev-lang/swig
+	>=dev-python/cython-0.29.18[${PYTHON_USEDEP}]
+	>=dev-python/meson-python-0.11[${PYTHON_USEDEP}]
+	dev-python/pybind11[${PYTHON_USEDEP}]
+	>=dev-util/meson-0.62.2
+	dev-util/patchelf
+	virtual/pkgconfig
+	doc? ( app-arch/unzip )
+	fortran? ( dev-python/pythran[${PYTHON_USEDEP}] )
+	test? (
+		dev-python/pytest-xdist[${PYTHON_USEDEP}]
+	)
+	test-rust? (
+		dev-python/pooch[${PYTHON_USEDEP}]
+	)
+"
+
+EPYTEST_DESELECT=(
+	linalg/tests/test_decomp.py::TestSchur::test_sort
+	linalg/tests/test_solvers.py::test_solve_discrete_are
+	optimize/tests/test_milp.py::test_milp_timeout_16545
+
+	# Network
+	datasets/tests/test_data.py::TestDatasets::test_existence_all
+	datasets/tests/test_data.py::TestDatasets::test_ascent
+	datasets/tests/test_data.py::TestDatasets::test_face
+	datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
+)
+
+distutils_enable_tests pytest
+
+src_unpack() {
+	default
+
+	if use doc; then
+		unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
+	fi
+}
+
+python_configure_all() {
+	export SCIPY_USE_PYTHRAN=$(usex fortran 1 0)
+	DISTUTILS_ARGS=(
+		-Dblas=blas
+		-Dlapack=lapack
+	)
+}
+
+python_test() {
+	cd "${T}" || die
+
+	if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
+		EPYTEST_IGNORE+=(
+			datasets/tests/test_data.py
+		)
+	fi
+
+	epytest -n "$(makeopts_jobs)" --pyargs scipy
+}
+
+python_install_all() {
+	use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
+
+	distutils-r1_python_install_all
+}