From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 4DB2515800F for ; Sun, 19 Feb 2023 15:44:35 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 0070DE085A; Sun, 19 Feb 2023 15:44:33 +0000 (UTC) Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 5D4E2E0839 for ; Sun, 19 Feb 2023 15:44:33 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 4A079340DC4 for ; Sun, 19 Feb 2023 15:44:32 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id A87268B6 for ; Sun, 19 Feb 2023 15:44:30 +0000 (UTC) From: "David Seifert" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "David Seifert" Message-ID: <1676821460.5cd2ddf3a6b7192026b3b80c33ba8dfcda309939.soap@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/bcftools/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/bcftools/Manifest sci-biology/bcftools/bcftools-1.15.1.ebuild X-VCS-Directories: sci-biology/bcftools/ X-VCS-Committer: soap X-VCS-Committer-Name: David Seifert X-VCS-Revision: 5cd2ddf3a6b7192026b3b80c33ba8dfcda309939 X-VCS-Branch: master Date: Sun, 19 Feb 2023 15:44:30 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: c86fdd84-1df1-40c4-84ee-834d1e17440c X-Archives-Hash: 8151c440bc6b4a37de9d80c6a2de4aa7 commit: 5cd2ddf3a6b7192026b3b80c33ba8dfcda309939 Author: David Seifert gentoo org> AuthorDate: Sun Feb 19 15:44:20 2023 +0000 Commit: David Seifert gentoo org> CommitDate: Sun Feb 19 15:44:20 2023 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5cd2ddf3 sci-biology/bcftools: drop 1.15.1 Signed-off-by: David Seifert gentoo.org> sci-biology/bcftools/Manifest | 1 - sci-biology/bcftools/bcftools-1.15.1.ebuild | 42 ----------------------------- 2 files changed, 43 deletions(-) diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest index af5f3f40dd8b..2302cb589b4f 100644 --- a/sci-biology/bcftools/Manifest +++ b/sci-biology/bcftools/Manifest @@ -1,2 +1 @@ -DIST bcftools-1.15.1.tar.bz2 6917252 BLAKE2B d2389df8d2a1bbc48fcaccad47d77ff99d700e82e04330189e7d93acdac97a13506c2b799fbba31bdc0988977c7df7c699e7b156f3530dd35e5f052c6f977731 SHA512 60fedacc41051675d372e68146ac8fa0dc019a7fb694fda487d89e62f34edaf5ac11cca38779e9bcfcf8b3148802fadabed12f7e46ad534ad5087b8d6383f97b DIST bcftools-1.16.tar.bz2 7325862 BLAKE2B 0e1240448d4efb352d3d0cd83decd286f7544fff3676f0a5cca51dec9c445c47c37ac24a3317aa7b41182c576e7e57dba460fc98aca069dc2f8fe0625c0b0f06 SHA512 998d5ac941f73798c35dd1db7ac7aba9067f275bd3055728aabfd8edd9f40484130df1fb57621d1a762a57b28ffcac358570915c341d420ae6f12bd17f7651a3 diff --git a/sci-biology/bcftools/bcftools-1.15.1.ebuild b/sci-biology/bcftools/bcftools-1.15.1.ebuild deleted file mode 100644 index 9032b97e11d0..000000000000 --- a/sci-biology/bcftools/bcftools-1.15.1.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{9..10} ) - -inherit python-single-r1 - -DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" -HOMEPAGE="http://www.htslib.org" -SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND=" - dev-lang/perl - $(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]') - =sci-libs/htslib-${PV}*:= - sys-libs/zlib - ${PYTHON_DEPS}" -DEPEND="${RDEPEND}" -BDEPEND="${PYTHON_DEPS}" - -src_prepare() { - default - - python_fix_shebang misc/{gff2gff,guess-ploidy,plot-roh}.py - - # remove bundled htslib - rm -r htslib-* || die -} - -src_configure() { - econf \ - --disable-bcftools-plugins \ - --disable-libgsl \ - --with-htslib=system -}