[gentoo-commits] proj/sci:master commit in: dev-python/pyBigWig/

[gentoo-commits] proj/sci:master commit in: dev-python/pyBigWig/

[Martin Mokrejs]

commit:     86524f7c2e5c34bb010578a76ac7a01f679e2107
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 31 21:02:40 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Mar 31 21:02:40 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=86524f7c

dev-python/pyBigWig: add python wrapper

Package-Manager: Portage-2.3.5, Repoman-2.3.1

 dev-python/pyBigWig/metadata.xml          | 12 ++++++++++++
 dev-python/pyBigWig/pyBigWig-0.3.4.ebuild | 16 ++++++++++++++++
 2 files changed, 28 insertions(+)

diff --git a/dev-python/pyBigWig/metadata.xml b/dev-python/pyBigWig/metadata.xml
new file mode 100644
index 000000000..f68a1b6fa
--- /dev/null
+++ b/dev-python/pyBigWig/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/dev-python/pyBigWig/pyBigWig-0.3.4.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.4.ebuild
new file mode 100644
index 000000000..77593cd2f
--- /dev/null
+++ b/dev-python/pyBigWig/pyBigWig-0.3.4.ebuild
@@ -0,0 +1,16 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DESCRIPTION="Python extension written in C for quick access to and creation of bigWig files"
+HOMEPAGE="https://github.com/dpryan79/pyBigWig"
+SRC_URI="https://github.com/dpryan79/pyBigWig/archive/0.3.4.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="sci-biology/libBigWig"
+RDEPEND="${DEPEND}"

[gentoo-commits] proj/sci:master commit in: dev-python/pyBigWig/

[Martin Mokrejs]

commit:     bca228c807c508d190c521f11906457d5b98be28
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 31 21:16:02 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Mar 31 21:16:02 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=bca228c8

dev-python/pyBigWig: add live ebuild

Package-Manager: Portage-2.3.5, Repoman-2.3.1

 dev-python/pyBigWig/pyBigWig-9999.ebuild | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)

diff --git a/dev-python/pyBigWig/pyBigWig-9999.ebuild b/dev-python/pyBigWig/pyBigWig-9999.ebuild
new file mode 100644
index 000000000..0e2cd40c8
--- /dev/null
+++ b/dev-python/pyBigWig/pyBigWig-9999.ebuild
@@ -0,0 +1,18 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit git-r3
+
+DESCRIPTION="Python extension written in C for quick access to and creation of bigWig files"
+HOMEPAGE="https://github.com/dpryan79/pyBigWig"
+EGIT_REPO_URI="https://github.com/dpryan79/pyBigWig.git"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="sci-biology/libBigWig"
+RDEPEND="${DEPEND}"

[gentoo-commits] proj/sci:master commit in: dev-python/pyBigWig/

[Martin Mokrejs]

commit:     6f2a0b7ac4c72a3f2a0fca47292602e38a17ea68
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 31 22:17:26 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Mar 31 22:17:26 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=6f2a0b7a

dev-python/pyBigWig: fix pythonic installation

Package-Manager: Portage-2.3.5, Repoman-2.3.1

 dev-python/pyBigWig/pyBigWig-0.3.4.ebuild | 6 ++++++
 dev-python/pyBigWig/pyBigWig-9999.ebuild  | 4 +++-
 2 files changed, 9 insertions(+), 1 deletion(-)

diff --git a/dev-python/pyBigWig/pyBigWig-0.3.4.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.4.ebuild
index 77593cd2f..ba8e24b6a 100644
--- a/dev-python/pyBigWig/pyBigWig-0.3.4.ebuild
+++ b/dev-python/pyBigWig/pyBigWig-0.3.4.ebuild
@@ -3,6 +3,12 @@
 
 EAPI=6
 
+PYTHON_COMPAT=( python2_7 python 3_5 )
+
+PYTHON_COMPAT=( python2_7 python3_5 )
+
+inherit distutils-r1
+
 DESCRIPTION="Python extension written in C for quick access to and creation of bigWig files"
 HOMEPAGE="https://github.com/dpryan79/pyBigWig"
 SRC_URI="https://github.com/dpryan79/pyBigWig/archive/0.3.4.tar.gz -> ${P}.tar.gz"

diff --git a/dev-python/pyBigWig/pyBigWig-9999.ebuild b/dev-python/pyBigWig/pyBigWig-9999.ebuild
index 0e2cd40c8..169e6198f 100644
--- a/dev-python/pyBigWig/pyBigWig-9999.ebuild
+++ b/dev-python/pyBigWig/pyBigWig-9999.ebuild
@@ -3,7 +3,9 @@
 
 EAPI=5
 
-inherit git-r3
+PYTHON_COMPAT=( python2_7 python3_5 )
+
+inherit git-r3 distutils-r1
 
 DESCRIPTION="Python extension written in C for quick access to and creation of bigWig files"
 HOMEPAGE="https://github.com/dpryan79/pyBigWig"

[gentoo-commits] proj/sci:master commit in: dev-python/pyBigWig/

[Aisha Tammy]

commit:     d44211c8d860cae919ec5e1810c6320aa6bab4db
Author:     Aisha Tammy <gentoo <AT> aisha <DOT> cc>
AuthorDate: Wed Oct  7 01:36:47 2020 +0000
Commit:     Aisha Tammy <gentoo <AT> aisha <DOT> cc>
CommitDate: Wed Oct  7 01:36:47 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d44211c8

dev-python/pyBigWig: drop old package

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc>

 dev-python/pyBigWig/pyBigWig-0.3.4.ebuild | 22 ----------------------
 1 file changed, 22 deletions(-)

diff --git a/dev-python/pyBigWig/pyBigWig-0.3.4.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.4.ebuild
deleted file mode 100644
index ba8e24b6a..000000000
--- a/dev-python/pyBigWig/pyBigWig-0.3.4.ebuild
+++ /dev/null
@@ -1,22 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 python 3_5 )
-
-PYTHON_COMPAT=( python2_7 python3_5 )
-
-inherit distutils-r1
-
-DESCRIPTION="Python extension written in C for quick access to and creation of bigWig files"
-HOMEPAGE="https://github.com/dpryan79/pyBigWig"
-SRC_URI="https://github.com/dpryan79/pyBigWig/archive/0.3.4.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="sci-biology/libBigWig"
-RDEPEND="${DEPEND}"

[gentoo-commits] proj/sci:master commit in: dev-python/pyBigWig/

[Aisha Tammy]

commit:     60a4b08ed1a8069e82d8346ea9275fbf44b35282
Author:     Aisha Tammy <gentoo <AT> aisha <DOT> cc>
AuthorDate: Wed Oct  7 01:36:18 2020 +0000
Commit:     Aisha Tammy <gentoo <AT> aisha <DOT> cc>
CommitDate: Wed Oct  7 01:36:18 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=60a4b08e

dev-python/pyBigWig: version bump

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc>

 dev-python/pyBigWig/pyBigWig-0.3.17.ebuild | 24 ++++++++++++++++++++++++
 dev-python/pyBigWig/pyBigWig-9999.ebuild   | 22 +++++++++++++---------
 2 files changed, 37 insertions(+), 9 deletions(-)

diff --git a/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild
new file mode 100644
index 000000000..9ab75f89b
--- /dev/null
+++ b/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6..9} )
+inherit distutils-r1
+
+DESCRIPTION="quick access to and creation of bigWig files"
+HOMEPAGE="https://github.com/dpryan79/pyBigWig"
+
+if [[ ${PV} == 9999 ]] ; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/dpryan79/pyBigWig"
+else
+	SRC_URI="https://github.com/dpryan79/pyBigWig/archive/${PV}.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86"
+fi
+
+LICENSE="MIT"
+SLOT="0"
+
+DEPEND="sci-biology/libBigWig"
+RDEPEND="${DEPEND}"

diff --git a/dev-python/pyBigWig/pyBigWig-9999.ebuild b/dev-python/pyBigWig/pyBigWig-9999.ebuild
index 169e6198f..9ab75f89b 100644
--- a/dev-python/pyBigWig/pyBigWig-9999.ebuild
+++ b/dev-python/pyBigWig/pyBigWig-9999.ebuild
@@ -1,20 +1,24 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
-PYTHON_COMPAT=( python2_7 python3_5 )
+PYTHON_COMPAT=( python3_{6..9} )
+inherit distutils-r1
 
-inherit git-r3 distutils-r1
-
-DESCRIPTION="Python extension written in C for quick access to and creation of bigWig files"
+DESCRIPTION="quick access to and creation of bigWig files"
 HOMEPAGE="https://github.com/dpryan79/pyBigWig"
-EGIT_REPO_URI="https://github.com/dpryan79/pyBigWig.git"
+
+if [[ ${PV} == 9999 ]] ; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/dpryan79/pyBigWig"
+else
+	SRC_URI="https://github.com/dpryan79/pyBigWig/archive/${PV}.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86"
+fi
 
 LICENSE="MIT"
 SLOT="0"
-KEYWORDS=""
-IUSE=""
 
 DEPEND="sci-biology/libBigWig"
 RDEPEND="${DEPEND}"

[gentoo-commits] proj/sci:master commit in: dev-python/pyBigWig/

[Horea Christian]

commit:     4001c2fa3003e70de63114e9e579265529e79c65
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Jan 13 08:24:53 2023 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Jan 13 08:24:53 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=4001c2fa

dev-python/pyBigWig: updated PYTHON_COMPAT

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 dev-python/pyBigWig/pyBigWig-0.3.17.ebuild | 6 +++---
 dev-python/pyBigWig/pyBigWig-9999.ebuild   | 6 +++---
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild
index eaa5d5375..5f11bca4a 100644
--- a/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild
+++ b/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2023 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
-PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_COMPAT=( python3_{10..11} )
 inherit distutils-r1
 
 DESCRIPTION="quick access to and creation of bigWig files"

diff --git a/dev-python/pyBigWig/pyBigWig-9999.ebuild b/dev-python/pyBigWig/pyBigWig-9999.ebuild
index eaa5d5375..5f11bca4a 100644
--- a/dev-python/pyBigWig/pyBigWig-9999.ebuild
+++ b/dev-python/pyBigWig/pyBigWig-9999.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2023 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
-PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_COMPAT=( python3_{10..11} )
 inherit distutils-r1
 
 DESCRIPTION="quick access to and creation of bigWig files"

[gentoo-commits] proj/sci:master commit in: dev-python/pyBigWig/

[Horea Christian]

commit:     fb01fab90bd66acaa7e8707d3043308118c3a1ff
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Jan 13 08:28:17 2023 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Jan 13 08:28:17 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=fb01fab9

dev-python/pyBigWig: add 0.3.18

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 dev-python/pyBigWig/pyBigWig-0.3.18.ebuild | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/dev-python/pyBigWig/pyBigWig-0.3.18.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.18.ebuild
new file mode 100644
index 000000000..5f11bca4a
--- /dev/null
+++ b/dev-python/pyBigWig/pyBigWig-0.3.18.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..11} )
+inherit distutils-r1
+
+DESCRIPTION="quick access to and creation of bigWig files"
+HOMEPAGE="https://github.com/dpryan79/pyBigWig"
+
+if [[ ${PV} == 9999 ]] ; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/dpryan79/pyBigWig"
+else
+	SRC_URI="https://github.com/dpryan79/pyBigWig/archive/${PV}.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86"
+fi
+
+LICENSE="MIT"
+SLOT="0"
+
+DEPEND="sci-biology/libBigWig"
+RDEPEND="${DEPEND}"

[gentoo-commits] proj/sci:master commit in: dev-python/pyBigWig/

[Horea Christian]

commit:     d3553f34bc1d54ece8b282be0fd33fbdd8976cef
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Jan 13 08:31:23 2023 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Jan 13 08:31:23 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d3553f34

dev-python/pyBigWig: using PEP517

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 dev-python/pyBigWig/pyBigWig-0.3.17.ebuild | 1 +
 dev-python/pyBigWig/pyBigWig-0.3.18.ebuild | 1 +
 dev-python/pyBigWig/pyBigWig-9999.ebuild   | 1 +
 3 files changed, 3 insertions(+)

diff --git a/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild
index 5f11bca4a..acaca2306 100644
--- a/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild
+++ b/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild
@@ -4,6 +4,7 @@
 EAPI=8
 
 PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_USE_PEP517=setuptools
 inherit distutils-r1
 
 DESCRIPTION="quick access to and creation of bigWig files"

diff --git a/dev-python/pyBigWig/pyBigWig-0.3.18.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.18.ebuild
index 5f11bca4a..acaca2306 100644
--- a/dev-python/pyBigWig/pyBigWig-0.3.18.ebuild
+++ b/dev-python/pyBigWig/pyBigWig-0.3.18.ebuild
@@ -4,6 +4,7 @@
 EAPI=8
 
 PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_USE_PEP517=setuptools
 inherit distutils-r1
 
 DESCRIPTION="quick access to and creation of bigWig files"

diff --git a/dev-python/pyBigWig/pyBigWig-9999.ebuild b/dev-python/pyBigWig/pyBigWig-9999.ebuild
index 5f11bca4a..acaca2306 100644
--- a/dev-python/pyBigWig/pyBigWig-9999.ebuild
+++ b/dev-python/pyBigWig/pyBigWig-9999.ebuild
@@ -4,6 +4,7 @@
 EAPI=8
 
 PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_USE_PEP517=setuptools
 inherit distutils-r1
 
 DESCRIPTION="quick access to and creation of bigWig files"