From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (2048 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 724F1158020 for ; Sun, 20 Nov 2022 21:23:21 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id BE4DBE08E0; Sun, 20 Nov 2022 21:23:20 +0000 (UTC) Received: from smtp.gentoo.org (mail.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id A8060E08E0 for ; Sun, 20 Nov 2022 21:23:20 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id CE0F0341209 for ; Sun, 20 Nov 2022 21:23:19 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 2118173B for ; Sun, 20 Nov 2022 21:23:18 +0000 (UTC) From: "David Seifert" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "David Seifert" Message-ID: <1668979390.41183c48ca86eaaee196abfb18b935f12836f75a.soap@gentoo> Subject: [gentoo-commits] repo/gentoo:master commit in: sci-biology/hmmer/ X-VCS-Repository: repo/gentoo X-VCS-Files: sci-biology/hmmer/hmmer-2.3.2-r5.ebuild X-VCS-Directories: sci-biology/hmmer/ X-VCS-Committer: soap X-VCS-Committer-Name: David Seifert X-VCS-Revision: 41183c48ca86eaaee196abfb18b935f12836f75a X-VCS-Branch: master Date: Sun, 20 Nov 2022 21:23:18 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 5ac778c8-07e9-4b15-8050-8a2a1ae04a54 X-Archives-Hash: 8f6a715dcccf215c571fb908551dcebc commit: 41183c48ca86eaaee196abfb18b935f12836f75a Author: David Seifert gentoo org> AuthorDate: Sun Nov 20 21:23:10 2022 +0000 Commit: David Seifert gentoo org> CommitDate: Sun Nov 20 21:23:10 2022 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=41183c48 sci-biology/hmmer: expose XSI pthread_setconcurrency() prototypes Closes: https://bugs.gentoo.org/882279 Signed-off-by: David Seifert gentoo.org> sci-biology/hmmer/hmmer-2.3.2-r5.ebuild | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/sci-biology/hmmer/hmmer-2.3.2-r5.ebuild b/sci-biology/hmmer/hmmer-2.3.2-r5.ebuild index b9f77b9dfce8..b305820faff3 100644 --- a/sci-biology/hmmer/hmmer-2.3.2-r5.ebuild +++ b/sci-biology/hmmer/hmmer-2.3.2-r5.ebuild @@ -3,7 +3,7 @@ EAPI=8 -inherit toolchain-funcs +inherit flag-o-matic toolchain-funcs DESCRIPTION="Sequence analysis using profile hidden Markov models" HOMEPAGE="http://hmmer.org/" @@ -23,6 +23,9 @@ PATCHES=( ) src_configure() { + # required to expose pthread_setconcurrency(), #882279 + append-cppflags -D_XOPEN_SOURCE=500 + # prevent stray environmental variable # from causing issues in the test phase unset TMPDIR