[gentoo-commits] repo/gentoo:master commit in: sci-biology/phred/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/phred/

[David Seifert]

commit:     75516d43bde1d0ab04a6629a8124c3100babc845
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Jan 13 23:03:40 2018 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Jan 13 23:04:04 2018 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=75516d43

sci-biology/phred: Rehash

Closes: https://bugs.gentoo.org/642906
Package-Manager: Portage-2.3.19, Repoman-2.3.6

 sci-biology/phred/Manifest | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/phred/Manifest b/sci-biology/phred/Manifest
index c326374708c..1c0aa1a3ee9 100644
--- a/sci-biology/phred/Manifest
+++ b/sci-biology/phred/Manifest
@@ -1 +1 @@
-DIST phred-dist-071220.b-acd.tar.gz 357767 SHA256 364b0b54c29717ba4c8acc48a128eaf25ba1d7f06acab7565975f6879764a975 SHA512 0a6b0a733e6dcc0495eaab720b75f8e5815df494d0a773b8b8336d5208321c2ba475921084835a769367ec51aed156585ab97346a510100d4337e3215ec75276 WHIRLPOOL 9b14cfb1ca970a14ef613ca17efb82955c0ecec414dfad8835c883650f306b3a79846b7a410a9359cbd9ca953d890673366b6f865a2a357e81213d34b3327d3e
+DIST phred-dist-071220.b-acd.tar.gz 357767 BLAKE2B ae1180f54eaa3631a4e32c2ffe388b35745302e3d014c8fa893119e7e488d4bb4316f7ee0588cd12db5cbbc23033f689f4a0a487cdc7fe42e8c7a67ceb3c43ae SHA512 0a6b0a733e6dcc0495eaab720b75f8e5815df494d0a773b8b8336d5208321c2ba475921084835a769367ec51aed156585ab97346a510100d4337e3215ec75276

[gentoo-commits] repo/gentoo:master commit in: sci-biology/phred/

[Ben Kohler]

commit:     785201c189534fff061b42c143f0cf25799f2e43
Author:     Ben Kohler <bkohler <AT> gentoo <DOT> org>
AuthorDate: Tue Feb  5 18:06:57 2019 +0000
Commit:     Ben Kohler <bkohler <AT> gentoo <DOT> org>
CommitDate: Tue Feb  5 18:07:41 2019 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=785201c1

sci-biology/phred: don't reference ${DISTDIR} in pkg_nofetch

Package-Manager: Portage-2.3.59, Repoman-2.3.12
Signed-off-by: Ben Kohler <bkohler <AT> gentoo.org>

 sci-biology/phred/phred-071220-r1.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/phred/phred-071220-r1.ebuild b/sci-biology/phred/phred-071220-r1.ebuild
index e09c456b27d..bf7a0c7338c 100644
--- a/sci-biology/phred/phred-071220-r1.ebuild
+++ b/sci-biology/phred/phred-071220-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -27,7 +27,7 @@ PATCHES=(
 
 pkg_nofetch() {
 	einfo "Please visit ${HOMEPAGE} and obtain the file"
-	einfo "${SRC_URI}, then place it in ${DISTDIR}"
+	einfo "${SRC_URI}, then place it into your DISTDIR directory."
 }
 
 src_compile() {

[gentoo-commits] repo/gentoo:master commit in: sci-biology/phred/

[David Seifert]

commit:     f040325d9ef33ba1c90bfa955b22ca51c8c9f7ff
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Jul  7 19:57:04 2022 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Jul  7 19:57:04 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f040325d

sci-biology/phred: update EAPI 6 -> 8

Signed-off-by: David Seifert <soap <AT> gentoo.org>

 ...red-071220-r1.ebuild => phred-071220-r2.ebuild} | 24 +++++++++-------------
 1 file changed, 10 insertions(+), 14 deletions(-)

diff --git a/sci-biology/phred/phred-071220-r1.ebuild b/sci-biology/phred/phred-071220-r2.ebuild
similarity index 69%
rename from sci-biology/phred/phred-071220-r1.ebuild
rename to sci-biology/phred/phred-071220-r2.ebuild
index bf7a0c7338cb..9d7ff9a1f6c8 100644
--- a/sci-biology/phred/phred-071220-r1.ebuild
+++ b/sci-biology/phred/phred-071220-r2.ebuild
@@ -1,28 +1,23 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=8
 
 inherit toolchain-funcs
 
 DESCRIPTION="A base caller for Sanger DNA sequencing"
 HOMEPAGE="http://phrap.org/phredphrapconsed.html"
 SRC_URI="phred-dist-071220.b-acd.tar.gz"
+S="${WORKDIR}"
 
 LICENSE="phrap"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}"
-
 RESTRICT="fetch"
+
 PATCHES=(
-	"${FILESDIR}/${PN}-071220-fix-build-system.patch"
-	"${FILESDIR}/${PN}-071220-fix-qa.patch"
+	"${FILESDIR}"/${PN}-071220-fix-build-system.patch
+	"${FILESDIR}"/${PN}-071220-fix-qa.patch
 )
 
 pkg_nofetch() {
@@ -39,11 +34,12 @@ src_compile() {
 src_install() {
 	dobin phred daev
 
-	insinto /usr/share/${PN}
+	insinto /usr/share/phred
 	doins phredpar.dat
 
-	echo "PHRED_PARAMETER_FILE=${EPREFIX}/usr/share/${PN}/phredpar.dat" > 99phred || die
-	doenvd 99phred
+	newenvd - 99phred <<- EOF
+		PHRED_PARAMETER_FILE="${EPREFIX}/usr/share/phred/phredpar.dat"
+	EOF
 
 	newdoc DAEV.DOC DAEV.DOC.txt
 	newdoc PHRED.DOC PHRED.DOC.txt

[gentoo-commits] repo/gentoo:master commit in: sci-biology/phred/

[Sam James]

commit:     23de60d965b179bafbda1604ee1437bd01f2e64b
Author:     Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Thu Sep 22 03:31:55 2022 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Thu Sep 22 04:05:22 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=23de60d9

sci-biology/phred: use PV in SRC_URI

not that it really matters in this case, but still.

Signed-off-by: Sam James <sam <AT> gentoo.org>

 sci-biology/phred/phred-071220-r2.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/phred/phred-071220-r2.ebuild b/sci-biology/phred/phred-071220-r2.ebuild
index 9d7ff9a1f6c8..2d33df654a1b 100644
--- a/sci-biology/phred/phred-071220-r2.ebuild
+++ b/sci-biology/phred/phred-071220-r2.ebuild
@@ -7,7 +7,7 @@ inherit toolchain-funcs
 
 DESCRIPTION="A base caller for Sanger DNA sequencing"
 HOMEPAGE="http://phrap.org/phredphrapconsed.html"
-SRC_URI="phred-dist-071220.b-acd.tar.gz"
+SRC_URI="${PN}-dist-${PV}.b-acd.tar.gz"
 S="${WORKDIR}"
 
 LICENSE="phrap"