[gentoo-commits] repo/gentoo:master commit in: sci-biology/biosql/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/biosql/

[David Seifert]

commit:     f21f66667be7601f9721f0d67bb1cec3478fe8bb
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Wed Mar  8 18:46:32 2017 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Wed Mar  8 18:47:12 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f21f6666

sci-biology/biosql: Modernise to EAPI 6

Package-Manager: Portage-2.3.4, Repoman-2.3.2

 ...{biosql-1.0.1.ebuild => biosql-1.0.1-r1.ebuild} | 33 ++++++++++++++--------
 1 file changed, 22 insertions(+), 11 deletions(-)

diff --git a/sci-biology/biosql/biosql-1.0.1.ebuild b/sci-biology/biosql/biosql-1.0.1-r1.ebuild
similarity index 54%
rename from sci-biology/biosql/biosql-1.0.1.ebuild
rename to sci-biology/biosql/biosql-1.0.1-r1.ebuild
index 950e6d347f8..6508d6a3a2e 100644
--- a/sci-biology/biosql/biosql-1.0.1.ebuild
+++ b/sci-biology/biosql/biosql-1.0.1-r1.ebuild
@@ -1,32 +1,43 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
+EAPI=6
+
 DESCRIPTION="A generic bioinformatics relational database model"
 HOMEPAGE="http://www.biosql.org/"
 SRC_URI="http://biosql.org/DIST/${P}.tar.bz2"
 
 LICENSE="LGPL-3"
 SLOT="0"
-IUSE="mysql postgres"
 KEYWORDS="amd64 x86"
+IUSE="mysql postgres"
 
 # WARNING: bioperl-db is claimed to be incompatible with >=postgresql-8.3 (see INSTALL)
 
-DEPEND="mysql? ( dev-perl/DBD-mysql )
+DEPEND="
+	mysql? ( dev-perl/DBD-mysql )
 	postgres? ( dev-perl/DBD-Pg )"
-RDEPEND="${DEPEND}"
+RDEPEND="
+	${DEPEND}
+	dev-lang/perl"
 
 src_install() {
 	insinto /usr/share/${PN}
-	doins -r sql scripts/* || die
-	insinto /usr/share/doc/${P}
-	doins -r doc/*
-	dodoc Changes INSTALL README Release.txt
+	doins -r sql scripts/.
+
+	dodoc Changes README Release.txt doc/*.pdf
+
+	docinto biopython
+	dodoc doc/{README,schema-overview.txt,biopython/{cor6_6.gb,*.pdf}}
+	docompress -x /usr/share/doc/${PF}/biopython
+
+	docinto html
+	dodoc doc/{biopython/,}*.htm*
 }
 
 pkg_postinst() {
-	echo
+	elog
 	elog "Please read the BioSQL schema installation instructions in"
-	elog "/usr/share/doc/${P} to begin using the schema."
-	echo
+	elog "${EROOT%/}/usr/share/doc/${PF} to begin using the schema."
+	elog
 }

[gentoo-commits] repo/gentoo:master commit in: sci-biology/biosql/

[Andrew Ammerlaan]

commit:     c90149b2e5481d0991f41ba4b92014e7793c23f5
Author:     Michael Mair-Keimberger <mmk <AT> levelnine <DOT> at>
AuthorDate: Tue Aug  2 17:08:16 2022 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Aug 23 12:06:12 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c90149b2

sci-biology/biosql: use HTTPS

Signed-off-by: Michael Mair-Keimberger <mmk <AT> levelnine.at>
Portage 3.0.34 / pkgdev 0.2.1 / pkgcheck 0.10.11
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/biosql/biosql-1.0.1-r2.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/biosql/biosql-1.0.1-r2.ebuild b/sci-biology/biosql/biosql-1.0.1-r2.ebuild
index c32ff970f9af..fd42d5e58a9a 100644
--- a/sci-biology/biosql/biosql-1.0.1-r2.ebuild
+++ b/sci-biology/biosql/biosql-1.0.1-r2.ebuild
@@ -4,8 +4,8 @@
 EAPI=8
 
 DESCRIPTION="A generic bioinformatics relational database model"
-HOMEPAGE="http://www.biosql.org/"
-SRC_URI="http://biosql.org/DIST/${P}.tar.bz2"
+HOMEPAGE="https://biosql.org/"
+SRC_URI="https://biosql.org/DIST/${P}.tar.bz2"
 
 LICENSE="LGPL-3"
 SLOT="0"