[gentoo-commits] repo/gentoo:master commit in: sci-biology/iedera/, sci-biology/iedera/files/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/iedera/, sci-biology/iedera/files/

[David Seifert]

commit:     34dc9de16f4718583c6703705017a2365a137bf8
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Jan 21 18:35:27 2016 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Jan 21 18:36:19 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=34dc9de1

sci-biology/iedera: Remove hardcoded {C,CXX,LD}FLAGS from configure.ac

Package-Manager: portage-2.2.27

 .../iedera/files/iedera-1.05-fix-buildsystem.patch       | 16 ++++++++++++++++
 .../iedera/{iedera-1.05.ebuild => iedera-1.05-r1.ebuild} | 12 ++++++++----
 2 files changed, 24 insertions(+), 4 deletions(-)

diff --git a/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch b/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch
new file mode 100644
index 0000000..f232d7d
--- /dev/null
+++ b/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch
@@ -0,0 +1,16 @@
+iedera sets default flags that override user {C,CXX,LD}FLAGS
+
+--- iedera-1.05/configure.ac
++++ iedera-1.05/configure.ac
+@@ -4,11 +4,5 @@
+ AC_PROG_INSTALL
+ AC_PROG_CXX
+ AC_HEADER_STDC
+-CFLAGS="$CFLAGS $UNAME_DEFS -O3 -pipe -funroll-loops -Wall"
+-CXXFLAGS="$CFLAGS"
+-LDFLAGS="$LDFLAGS -lm"
+-AC_SUBST(CFLAGS)
+-AC_SUBST(CXXFLAGS)
+-AC_SUBST(LDFLAGS)
+ AC_CONFIG_FILES([Makefile])
+ AC_OUTPUT

diff --git a/sci-biology/iedera/iedera-1.05.ebuild b/sci-biology/iedera/iedera-1.05-r1.ebuild
similarity index 73%
rename from sci-biology/iedera/iedera-1.05.ebuild
rename to sci-biology/iedera/iedera-1.05-r1.ebuild
index fb442a6..ec52dd3 100644
--- a/sci-biology/iedera/iedera-1.05.ebuild
+++ b/sci-biology/iedera/iedera-1.05-r1.ebuild
@@ -4,6 +4,8 @@
 
 EAPI=6
 
+inherit autotools
+
 DESCRIPTION="A subset seed design tool for DNA sequence alignment"
 HOMEPAGE="http://bioinfo.lifl.fr/yass/iedera.php"
 SRC_URI="http://bioinfo.lifl.fr/yass/files/${P}.tar.gz"
@@ -13,10 +15,12 @@ SLOT="0"
 IUSE=""
 KEYWORDS="~amd64 ~x86"
 
-DEPEND=""
-RDEPEND=""
+PATCHES=(
+	"${FILESDIR}/${P}-fix-buildsystem.patch"
+)
 
-src_install() {
+src_prepare() {
+	mv configure.{in,ac} || die
 	default
-	dodoc AUTHORS README NEWS
+	eautoreconf
 }

[gentoo-commits] repo/gentoo:master commit in: sci-biology/iedera/, sci-biology/iedera/files/

[David Seifert]

commit:     174643674f7512007edf39f23e87872909aa38c9
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Thu Jul  7 19:56:57 2022 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Thu Jul  7 19:56:57 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=17464367

sci-biology/iedera: update EAPI 6 -> 8

Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch     |  4 ++--
 .../iedera/{iedera-1.05-r1.ebuild => iedera-1.05-r2.ebuild}    | 10 +++-------
 2 files changed, 5 insertions(+), 9 deletions(-)

diff --git a/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch b/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch
index f232d7de162b..8803ab64b4e1 100644
--- a/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch
+++ b/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch
@@ -1,7 +1,7 @@
 iedera sets default flags that override user {C,CXX,LD}FLAGS
 
---- iedera-1.05/configure.ac
-+++ iedera-1.05/configure.ac
+--- iedera-1.05/configure.in
++++ iedera-1.05/configure.in
 @@ -4,11 +4,5 @@
  AC_PROG_INSTALL
  AC_PROG_CXX

diff --git a/sci-biology/iedera/iedera-1.05-r1.ebuild b/sci-biology/iedera/iedera-1.05-r2.ebuild
similarity index 71%
rename from sci-biology/iedera/iedera-1.05-r1.ebuild
rename to sci-biology/iedera/iedera-1.05-r2.ebuild
index 115b5495f617..96734c6ef1c4 100644
--- a/sci-biology/iedera/iedera-1.05-r1.ebuild
+++ b/sci-biology/iedera/iedera-1.05-r2.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=8
 
 inherit autotools
 
@@ -11,15 +11,11 @@ SRC_URI="http://bioinfo.lifl.fr/yass/files/${P}.tar.gz"
 
 LICENSE="GPL-2"
 SLOT="0"
-IUSE=""
 KEYWORDS="~amd64 ~x86"
 
-PATCHES=(
-	"${FILESDIR}/${P}-fix-buildsystem.patch"
-)
+PATCHES=( "${FILESDIR}"/${P}-fix-buildsystem.patch )
 
 src_prepare() {
-	mv configure.{in,ac} || die
 	default
 	eautoreconf
 }