[gentoo-commits] proj/sci:master commit in: profiles/, sci-biology/jtreeview/

[gentoo-commits] proj/sci:master commit in: profiles/, sci-biology/jtreeview/

[Andrew Ammerlaan]

commit:     adf7383fa934d9a68a5ebb9d394fd963b1dd8c57
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 23 12:53:13 2022 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Sun Jan 23 12:53:13 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=adf7383f

sci-biology/jtreeview: remove old java package

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 profiles/package.mask                        |  4 ---
 sci-biology/jtreeview/jtreeview-1.2.0.ebuild | 39 ----------------------------
 sci-biology/jtreeview/jtreeview-9999.ebuild  | 30 ---------------------
 sci-biology/jtreeview/metadata.xml           | 16 ------------
 4 files changed, 89 deletions(-)

diff --git a/profiles/package.mask b/profiles/package.mask
index 0781ef1e3..9a0a75e44 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -76,7 +76,3 @@ sci-biology/quorum
 # No updates since 2009(!), no longer compiles
 # Removal in 30 days
 sci-biology/jigsaw
-
-# Andrew Ammerlaan <andrewammerlaan@gentoo.org (21 Jan 2022)
-# Requires dev-java/nanoxml which is masked for removal in ::gentoo
-sci-biology/jtreeview

diff --git a/sci-biology/jtreeview/jtreeview-1.2.0.ebuild b/sci-biology/jtreeview/jtreeview-1.2.0.ebuild
deleted file mode 100644
index 8f0e777c9..000000000
--- a/sci-biology/jtreeview/jtreeview-1.2.0.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit perl-module java-pkg-2 java-ant-2
-
-DESCRIPTION="Viewer for Microarray Data in PCL or CDT formats"
-HOMEPAGE="http://jtreeview.sourceforge.net/" # no https
-SRC_URI="
-	https://sourceforge.net/projects/jtreeview/files/jtreeview/${PV}/TreeView-${PV}-src.tar.gz
-	https://sourceforge.net/projects/jtreeview/files/helper-scripts/0.0.2/helper-scripts-0.0.2.tar.gz
-"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64"
-
-DEPEND=">virtual/jdk-1.7:*
-	dev-java/nanoxml"
-RDEPEND="${DEPEND}
-	>=virtual/jre-1.7:*"
-
-S="${WORKDIR}/TreeView-${PV}-src"
-JAVA_PKG_BSFIX_NAME="${S}"
-
-# TODO: use xltproc to create docs following TreeView-1.1.6r4-src/doc/README
-
-src_install(){
-	java-pkg_dojar TreeView.jar
-	java-pkg_dolauncher ${PN} TreeView.jar
-	cd ../helper-scripts-0.0.2 || die
-	perl_set_version
-	perl_domodule *.pm
-	perl_domodule *.pl
-	insinto /usr/share/"${PN}"/examples
-	doins blues.color
-	newdoc README README.helper-scripts
-}

diff --git a/sci-biology/jtreeview/jtreeview-9999.ebuild b/sci-biology/jtreeview/jtreeview-9999.ebuild
deleted file mode 100644
index 316368b4e..000000000
--- a/sci-biology/jtreeview/jtreeview-9999.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit perl-module java-pkg-2 java-ant-2 git-r3
-
-DESCRIPTION="Viewer for Microarray Data in PCL or CDT formats"
-HOMEPAGE="http://jtreeview.sourceforge.net/" # no https
-EGIT_REPO_URI="https://bitbucket.org/TreeView3Dev/treeview3.git"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS=""
-
-DEPEND=">virtual/jdk-1.7:*"
-RDEPEND="${DEPEND}
-	>=virtual/jre-1.7:*"
-
-src_install(){
-	java-pkg_dojar TreeView.jar
-	java-pkg_dolauncher ${PN} TreeView.jar
-	cd ../helper-scripts-0.0.2 || die
-	perl_set_version
-	perl_domodule *.pm
-	perl_domodule *.pl
-	insinto /usr/share/"${PN}"/examples
-	doins blues.color
-	newdoc README README.helper-scripts
-}

diff --git a/sci-biology/jtreeview/metadata.xml b/sci-biology/jtreeview/metadata.xml
deleted file mode 100644
index 5139daeeb..000000000
--- a/sci-biology/jtreeview/metadata.xml
+++ /dev/null
@@ -1,16 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="bitbucket">TreeView3Dev/treeview3</remote-id>
-		<remote-id type="sourceforge">jtreeview</remote-id>
-	</upstream>
-</pkgmetadata>