[gentoo-commits] repo/gentoo:master commit in: sci-biology/uchime/

[gentoo-commits] repo/gentoo:master commit in: sci-biology/uchime/

[Agostino Sarubbo]

commit:     64aa73a6893547ccd963d564e6fcede78605c78e
Author:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Fri Sep 25 14:23:15 2015 +0000
Commit:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Fri Sep 25 14:23:15 2015 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=64aa73a6

sci-biology/uchime: x86 stable wrt bug #556066

Package-Manager: portage-2.2.20.1
RepoMan-Options: --include-arches="x86"

 sci-biology/uchime/uchime-4.2.40.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/uchime/uchime-4.2.40.ebuild b/sci-biology/uchime/uchime-4.2.40.ebuild
index 19b55f5..556e29b 100644
--- a/sci-biology/uchime/uchime-4.2.40.ebuild
+++ b/sci-biology/uchime/uchime-4.2.40.ebuild
@@ -14,7 +14,7 @@ SRC_URI="http://drive5.com/${PN}/${MY_P}.tar.gz"
 
 SLOT="0"
 LICENSE="public-domain"
-KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
 IUSE="debug"
 
 S="${WORKDIR}"/${MY_P}

[gentoo-commits] repo/gentoo:master commit in: sci-biology/uchime/

[Johannes Huber]

commit:     8ae066be32756c3fd9c4398878c71ac31f261056
Author:     Johannes Huber <johu <AT> gentoo <DOT> org>
AuthorDate: Wed Feb  8 12:34:44 2017 +0000
Commit:     Johannes Huber <johu <AT> gentoo <DOT> org>
CommitDate: Wed Feb  8 12:35:01 2017 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8ae066be

sci-biology/uchime: EAPI 6

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-biology/uchime/uchime-4.2.40.ebuild | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/sci-biology/uchime/uchime-4.2.40.ebuild b/sci-biology/uchime/uchime-4.2.40.ebuild
index 556e29b797..06ab5a5249 100644
--- a/sci-biology/uchime/uchime-4.2.40.ebuild
+++ b/sci-biology/uchime/uchime-4.2.40.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=4
+EAPI=6
 
 inherit cmake-utils
 
@@ -21,4 +21,6 @@ S="${WORKDIR}"/${MY_P}
 
 src_prepare() {
 	cp "${FILESDIR}"/CMakeLists.txt . || die
+
+	cmake-utils_src_prepare
 }

[gentoo-commits] repo/gentoo:master commit in: sci-biology/uchime/

[Sam James]

commit:     9bb2017d31f4467386be5262aa036ecf5dabf97a
Author:     Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 15 02:35:24 2021 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Tue Jun 15 02:35:24 2021 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9bb2017d

sci-biology/uchime: workaround failure with GCC 11

Force C++14 for now because we don't really want a large patch for
typedefs.

Closes: https://bugs.gentoo.org/786297
Signed-off-by: Sam James <sam <AT> gentoo.org>

 sci-biology/uchime/uchime-4.2.40.ebuild | 11 +++++++++--
 1 file changed, 9 insertions(+), 2 deletions(-)

diff --git a/sci-biology/uchime/uchime-4.2.40.ebuild b/sci-biology/uchime/uchime-4.2.40.ebuild
index 75827ab3a30..9b346f4fbc8 100644
--- a/sci-biology/uchime/uchime-4.2.40.ebuild
+++ b/sci-biology/uchime/uchime-4.2.40.ebuild
@@ -4,7 +4,7 @@
 EAPI=7
 
 MY_P="${PN}${PV}_src"
-inherit cmake
+inherit cmake flag-o-matic
 
 DESCRIPTION="Fast, accurate chimera detection"
 HOMEPAGE="https://www.drive5.com/usearch/manual/uchime_algo.html"
@@ -13,7 +13,6 @@ SRC_URI="https://www.drive5.com/${PN}/${MY_P}.tar.gz"
 LICENSE="public-domain"
 SLOT="0"
 KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-IUSE="debug"
 
 S="${WORKDIR}"/${MY_P}
 
@@ -21,3 +20,11 @@ src_prepare() {
 	cp "${FILESDIR}"/CMakeLists.txt . || die
 	cmake_src_prepare
 }
+
+src_configure() {
+	# "myutils.h: error: reference to byte is ambiguous""
+	# bug #786297
+	append-cppflags -std=c++14
+
+	cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-biology/uchime/

[Sam James]

commit:     77f6cb64b11c91d7fac1418731ac29bf204d6327
Author:     Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Fri Jul 15 08:03:51 2022 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Fri Jul 15 08:04:34 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=77f6cb64

sci-biology/uchime: use append-cxxflags

Signed-off-by: Sam James <sam <AT> gentoo.org>

 sci-biology/uchime/uchime-4.2.40.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/uchime/uchime-4.2.40.ebuild b/sci-biology/uchime/uchime-4.2.40.ebuild
index 9b346f4fbc8d..e0481aae2c70 100644
--- a/sci-biology/uchime/uchime-4.2.40.ebuild
+++ b/sci-biology/uchime/uchime-4.2.40.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -24,7 +24,7 @@ src_prepare() {
 src_configure() {
 	# "myutils.h: error: reference to byte is ambiguous""
 	# bug #786297
-	append-cppflags -std=c++14
+	append-cxxflags -std=c++14
 
 	cmake_src_configure
 }