[gentoo-commits] proj/sci:master commit in: sci-biology/jtreeview-bin/

[gentoo-commits] proj/sci:master commit in: sci-biology/jtreeview-bin/

[Martin Mokrejs]

commit:     7edd503dc9baff0a0be17fb94f6a3e0d5b1538e6
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Feb 18 20:02:00 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Feb 18 20:02:00 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=7edd503d

sci-biology/jtreeview-bin: package using upstream's binary

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 .../jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild     | 44 ++++++++++++++++++++++
 sci-biology/jtreeview-bin/metadata.xml             | 12 ++++++
 2 files changed, 56 insertions(+)

diff --git a/sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild b/sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild
new file mode 100644
index 000000000..c85e2473e
--- /dev/null
+++ b/sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PERL_EXPORT_PHASE_FUNCTIONS=no
+inherit java-pkg-2 java-ant-2 eutils perl-module
+
+S="${WORKDIR}"/TreeView-1.1.6r4-bin
+
+DESCRIPTION="Viewer for Microarray Data in PCL or CDT formats"
+HOMEPAGE="http://jtreeview.sourceforge.net/"
+SRC_URI="
+	http://sourceforge.net/projects/jtreeview/files/jtreeview/1.1.6r4/TreeView-1.1.6r4-bin.tar.gz
+	http://sourceforge.net/projects/jtreeview/files/helper-scripts/0.0.2/helper-scripts-0.0.2.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="" # src_install is wrong somehow, TreeView.jar does not start
+IUSE=""
+
+DEPEND="
+	>virtual/jdk-1.5:*
+	!sci-biology/jtreeview"
+RDEPEND="${DEPEND}
+	>=virtual/jre-1.5:*"
+
+# TODO: use xltproc to create docs following TreeView-1.1.6r4-src/doc/README
+
+src_install(){
+	java-pkg_dojar TreeView.jar
+	java-pkg_dolauncher ${PN} TreeView.jar
+	insinto /usr/share/"${PN}"/lib/plugins
+	doins plugins/*.jar
+	cd ../helper-scripts-0.0.2 || die
+	perl_set_version
+	insinto "${VENDOR_LIB}"
+	doins *.pm
+	dobin *.pl
+	insinto /usr/share/"${PN}"/examples
+	doins blues.color
+	newdoc README README.helper-scripts
+}

diff --git a/sci-biology/jtreeview-bin/metadata.xml b/sci-biology/jtreeview-bin/metadata.xml
new file mode 100644
index 000000000..f68a1b6fa
--- /dev/null
+++ b/sci-biology/jtreeview-bin/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/jtreeview-bin/

[Andrew Ammerlaan]

commit:     cffccad4dc870c3daaa38679921817149fdc7af5
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Mar 18 18:45:53 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Mar 18 18:45:53 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=cffccad4

sci-biology/jtreeview-bin: use perl_domodule

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild b/sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild
index 84775e537..fe8fef44a 100644
--- a/sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild
+++ b/sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild
@@ -35,9 +35,8 @@ src_install(){
 	doins plugins/*.jar
 	cd ../helper-scripts-0.0.2 || die
 	perl_set_version
-	insinto "${VENDOR_LIB}"
-	doins *.pm
-	dobin *.pl
+	perl_domodule *.pm
+	perl_domodule *.pl
 	insinto /usr/share/"${PN}"/examples
 	doins blues.color
 	newdoc README README.helper-scripts

[gentoo-commits] proj/sci:master commit in: sci-biology/jtreeview-bin/

[Andrew Ammerlaan]

commit:     aeed9bb8d4cc7edc64713df7839d1c30c8574a2a
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue Jan 25 15:34:55 2022 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue Jan 25 15:34:55 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=aeed9bb8

sci-biology/jtreeview-bin: drop non-existing blocker

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild b/sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild
index fe8fef44a..d146efd5a 100644
--- a/sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild
+++ b/sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -13,6 +13,7 @@ SRC_URI="
 	https://sourceforge.net/projects/jtreeview/files/jtreeview/${PV}/TreeView-${PV}-bin.tar.gz
 	https://sourceforge.net/projects/jtreeview/files/helper-scripts/0.0.2/helper-scripts-0.0.2.tar.gz
 "
+S="${WORKDIR}/TreeView-${PV}-bin"
 
 LICENSE="GPL-2"
 SLOT="0"
@@ -20,11 +21,10 @@ KEYWORDS="~amd64"
 
 DEPEND="
 	>virtual/jdk-1.5:*
-	!sci-biology/jtreeview"
+"
 RDEPEND="${DEPEND}
-	>=virtual/jre-1.5:*"
-
-S="${WORKDIR}/TreeView-${PV}-bin"
+	>=virtual/jre-1.5:*
+"
 
 # TODO: use xltproc to create docs following TreeView-1.1.6r4-src/doc/README
 

[gentoo-commits] proj/sci:master commit in: sci-biology/jtreeview-bin/

[Horea Christian]

commit:     8b6e1175aad74052f2dc29c8ab7d2983c699341f
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Wed Mar 22 01:18:16 2023 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Wed Mar 22 01:18:16 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=8b6e1175

sci-biology/jtreeview-bin: update HOMEPAGE

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild b/sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild
index d146efd5a..63ec84d2f 100644
--- a/sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild
+++ b/sci-biology/jtreeview-bin/jtreeview-bin-1.2.0.ebuild
@@ -8,7 +8,7 @@ inherit java-pkg-2 java-ant-2 perl-module
 S="${WORKDIR}"/TreeView-1.1.6r4-bin
 
 DESCRIPTION="Viewer for Microarray Data in PCL or CDT formats"
-HOMEPAGE="http://jtreeview.sourceforge.net/" # no https
+HOMEPAGE="https://jtreeview.sourceforge.net/"
 SRC_URI="
 	https://sourceforge.net/projects/jtreeview/files/jtreeview/${PV}/TreeView-${PV}-bin.tar.gz
 	https://sourceforge.net/projects/jtreeview/files/helper-scripts/0.0.2/helper-scripts-0.0.2.tar.gz