[gentoo-commits] proj/sci:master commit in: sci-biology/edena/

[gentoo-commits] proj/sci:master commit in: sci-biology/edena/

[Martin Mokrejs]

commit:     3839c43e8d39adf0903e21ecb7da3d92efd48646
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jan 15 13:02:54 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jan 15 13:02:54 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3839c43e

sci-biology/edena: new package

Package-Manager: portage-2.2.7

---
 sci-biology/edena/ChangeLog             |  9 +++++++++
 sci-biology/edena/edena-3.131028.ebuild | 35 +++++++++++++++++++++++++++++++++
 sci-biology/edena/metadata.xml          |  9 +++++++++
 3 files changed, 53 insertions(+)

diff --git a/sci-biology/edena/ChangeLog b/sci-biology/edena/ChangeLog
new file mode 100644
index 0000000..a3f0909
--- /dev/null
+++ b/sci-biology/edena/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/edena
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*edena-3.131028 (15 Jan 2015)
+
+  15 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +edena-3.131028.ebuild, +metadata.xml:
+  sci-biology/edena: new package

diff --git a/sci-biology/edena/edena-3.131028.ebuild b/sci-biology/edena/edena-3.131028.ebuild
new file mode 100644
index 0000000..0c4fe10
--- /dev/null
+++ b/sci-biology/edena/edena-3.131028.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit toolchain-funcs
+
+DESCRIPTION="De novo short read assembler"
+HOMEPAGE="http://www.genomic.ch/edena.php"
+SRC_URI="http://www.genomic.ch/edena/EdenaV"${PV}".tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/EdenaV"${PV}"
+
+src_prepare(){
+	sed -e "s@^CCC.*@CCC = $(tc-getCXX)@" -e "s@^CFLAGS.*@CFLAGS = ${CFLAGS} -pthread@" -i src/Makefile || die
+}
+
+src_compile(){
+	cd src
+	emake
+}
+
+src_install(){
+	dobin src/edena
+	dodoc referenceManual.pdf
+}

diff --git a/sci-biology/edena/metadata.xml b/sci-biology/edena/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/edena/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/edena/

[Martin Mokrejs]

commit:     e59c7331387f1c200505eec2ec5ad422183c8d43
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Apr  8 19:11:58 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Apr  8 19:11:58 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e59c7331

sci-biology/edena: improve package description

Package-Manager: portage-2.2.28

 sci-biology/edena/edena-3.131028.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/edena/edena-3.131028.ebuild b/sci-biology/edena/edena-3.131028.ebuild
index 408b875..bdba533 100644
--- a/sci-biology/edena/edena-3.131028.ebuild
+++ b/sci-biology/edena/edena-3.131028.ebuild
@@ -6,7 +6,7 @@ EAPI=5
 
 inherit toolchain-funcs
 
-DESCRIPTION="De novo short read assembler"
+DESCRIPTION="De novo short read OLC assembler (overlap-layout-consensus)"
 HOMEPAGE="http://www.genomic.ch/edena.php"
 SRC_URI="http://www.genomic.ch/edena/EdenaV"${PV}".tar.gz"
 

[gentoo-commits] proj/sci:master commit in: sci-biology/edena/

[Andrew Ammerlaan]

commit:     38296d15e041df8c13505497760fe6e6c9653424
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Thu Mar 18 11:07:00 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Thu Mar 18 11:07:00 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=38296d15

sci-biology/edena: remove whitespace

makes it consistent with the rest

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/edena/edena-3.131028.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/edena/edena-3.131028.ebuild b/sci-biology/edena/edena-3.131028.ebuild
index bba5a770a..c942377f3 100644
--- a/sci-biology/edena/edena-3.131028.ebuild
+++ b/sci-biology/edena/edena-3.131028.ebuild
@@ -23,7 +23,7 @@ src_prepare(){
 	sed -e "s@^CCC.*@CCC = $(tc-getCXX)@" -e "s@^CFLAGS.*@CFLAGS = ${CFLAGS} -ansi -pthread@" -i src/Makefile || die
 }
 
-src_compile() {
+src_compile(){
 	cd src || die
 	default
 }