From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 819051382C5 for ; Mon, 1 Feb 2021 10:33:10 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id B86FAE099E; Mon, 1 Feb 2021 10:33:09 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id A0A8BE099E for ; Mon, 1 Feb 2021 10:33:09 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 5BA66340E9B for ; Mon, 1 Feb 2021 10:33:08 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 910F2B9 for ; Mon, 1 Feb 2021 10:33:06 +0000 (UTC) From: "Andrew Ammerlaan" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Andrew Ammerlaan" Message-ID: <1612175574.d71c56239475f71bc640d54a4e70f71335c9d637.andrewammerlaan@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/cortex_var/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild X-VCS-Directories: sci-biology/cortex_var/ X-VCS-Committer: andrewammerlaan X-VCS-Committer-Name: Andrew Ammerlaan X-VCS-Revision: d71c56239475f71bc640d54a4e70f71335c9d637 X-VCS-Branch: master Date: Mon, 1 Feb 2021 10:33:06 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 48deeb31-6efc-407d-affb-6912c8346bb0 X-Archives-Hash: 9a3606564493d494036108d4c150648f commit: d71c56239475f71bc640d54a4e70f71335c9d637 Author: Andrew Ammerlaan riseup net> AuthorDate: Mon Feb 1 10:32:54 2021 +0000 Commit: Andrew Ammerlaan riseup net> CommitDate: Mon Feb 1 10:32:54 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d71c5623 sci-biology/cortex_var: fix sed calls but still does not compile, needs a patch Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild b/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild index 0e611a6c6..f5b86e25c 100644 --- a/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild +++ b/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild @@ -28,13 +28,15 @@ S="${WORKDIR}/CORTEX_release_v${PV}" src_prepare(){ default - sed -e "s/ -O3 / ${CFLAGS} /" Makefile || die - sed -e "s#libs/gsl-1.15#${EPREFIX}/usr/include/gsl#" Makefile || die + sed -i -e "s/ -O3 / ${CFLAGS} /" Makefile || die + sed -i -e "s#libs/gsl-1.15#${EPREFIX}/usr/include/gsl#" Makefile || die } src_compile(){ rm -rf libs/htslib libs/gsl-1.15 || die - emake NUM_COLS=1 MAXK=31 cortex_var || die + emake -C libs/string_buffer + emake STRING_BUF_PATH="${S}/libs/string_buffer" HTS_PATH="/usr/include/" -C libs/seq_file + emake NUM_COLS=1 MAXK=31 cortex_var } src_install(){