* [gentoo-commits] proj/sci:master commit in: sci-libs/ghmm/files/, sci-libs/ghmm/
@ 2013-12-20 12:20 Justin Lecher
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2013-12-20 12:20 UTC (permalink / raw
To: gentoo-commits
commit: 490fa66ffa51dcf074eca92c85880a803e689377
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Dec 20 12:20:09 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Dec 20 12:20:09 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=490fa66f
sci-libs/ghmm: Drop obsolete tools, #163; correctly support python modules; add optional support for gsl and lapack
Package-Manager: portage-2.2.7
---
sci-libs/ghmm/ChangeLog | 8 +++-
sci-libs/ghmm/files/ghmm-9999-link.patch | 24 ++++++++++
sci-libs/ghmm/files/ghmm-9999-obsolete.patch | 13 ++++++
sci-libs/ghmm/files/ghmm-9999-out-of-source.patch | 40 +++++++++++++++++
sci-libs/ghmm/files/ghmm-9999-respect.patch | 12 +++++
sci-libs/ghmm/ghmm-9999.ebuild | 55 +++++++++++++++++------
6 files changed, 138 insertions(+), 14 deletions(-)
diff --git a/sci-libs/ghmm/ChangeLog b/sci-libs/ghmm/ChangeLog
index a555921..886fd6a 100644
--- a/sci-libs/ghmm/ChangeLog
+++ b/sci-libs/ghmm/ChangeLog
@@ -1,7 +1,13 @@
# ChangeLog for sci-libs/ghmm
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 20 Dec 2013; Justin Lecher <jlec@gentoo.org> ghmm-9999.ebuild,
+ +files/ghmm-9999-link.patch, +files/ghmm-9999-obsolete.patch,
+ +files/ghmm-9999-out-of-source.patch, +files/ghmm-9999-respect.patch:
+ Drop obsolete tools, #163; correctly support python modules; add optional
+ support for gsl and lapack
+
25 Jun 2011; Justin Lecher <jlec@gentoo.org> metadata.xml:
Fixed herd entry in metadata.xml
diff --git a/sci-libs/ghmm/files/ghmm-9999-link.patch b/sci-libs/ghmm/files/ghmm-9999-link.patch
new file mode 100644
index 0000000..9b4e919
--- /dev/null
+++ b/sci-libs/ghmm/files/ghmm-9999-link.patch
@@ -0,0 +1,24 @@
+Index: tools/Makefile.am
+===================================================================
+--- tools/Makefile.am (revision 2332)
++++ tools/Makefile.am (working copy)
+@@ -23,5 +23,5 @@
+ smix_hmm_SOURCES = smix_hmm.c
+ smo2xml_SOURCES = smo2xml.c
+
+-LDADD = $(top_builddir)/ghmm/.libs/libghmm.a
++LDADD = $(top_builddir)/ghmm/libghmm.la
+ bin_SCRIPTS = ghmm-config
+Index: tests/Makefile.am
+===================================================================
+--- tests/Makefile.am (revision 2332)
++++ tests/Makefile.am (working copy)
+@@ -34,7 +34,7 @@
+ read_fa \
+ mcmc
+
+-LDADD = $(top_builddir)/ghmm/.libs/libghmm.a
++LDADD = $(top_builddir)/ghmm/libghmm.la
+
+ TESTS_ENVIRONMENT = GHMM_SILENT_TESTS
+ TESTS = root_finder_test \
diff --git a/sci-libs/ghmm/files/ghmm-9999-obsolete.patch b/sci-libs/ghmm/files/ghmm-9999-obsolete.patch
new file mode 100644
index 0000000..2e6be54
--- /dev/null
+++ b/sci-libs/ghmm/files/ghmm-9999-obsolete.patch
@@ -0,0 +1,13 @@
+Index: configure.in
+===================================================================
+--- configure.in (revision 2332)
++++ configure.in (working copy)
+@@ -293,7 +293,7 @@
+ CFLAGS="$CFLAGS $LIBXML2_CFLAGS"
+
+ dnl final configuration
+-SUBDIRS="ghmm tools tests"
++SUBDIRS="ghmm"
+
+ dnl python wrapper can be switched on or off
+ AC_ARG_WITH(python,
diff --git a/sci-libs/ghmm/files/ghmm-9999-out-of-source.patch b/sci-libs/ghmm/files/ghmm-9999-out-of-source.patch
new file mode 100644
index 0000000..6197d9b
--- /dev/null
+++ b/sci-libs/ghmm/files/ghmm-9999-out-of-source.patch
@@ -0,0 +1,40 @@
+Index: tools/Makefile.am
+===================================================================
+--- tools/Makefile.am (revision 2332)
++++ tools/Makefile.am (working copy)
+@@ -12,7 +12,7 @@
+ MAINTAINERCLEANFILES = Makefile.in
+
+ BUILT_SOURCES =
+-INCLUDES = -I$(top_srcdir)
++INCLUDES = -I$(top_srcdir) -I$(top_builddir)/ghmm
+
+ bin_PROGRAMS = probdist cluster scluster smix_hmm $(OBSOLETE_TOOLS)
+ EXTRA_PROGRAMS = smo2xml
+Index: tests/Makefile.am
+===================================================================
+--- tests/Makefile.am (revision 2332)
++++ tests/Makefile.am (working copy)
+@@ -15,7 +15,7 @@
+ MAINTAINERCLEANFILES = Makefile.in
+ # stuff from dejagnu
+
+-INCLUDES=-I$(top_srcdir)
++INCLUDES=-I$(top_srcdir) -I$(top_builddir)/ghmm
+
+ #these tests will not be installed
+ # in progress: test_sdfoba nullmodel ciscreen test_sdmodel
+Index: ghmmwrapper/Makefile.am
+===================================================================
+--- ghmmwrapper/Makefile.am (revision 2332)
++++ ghmmwrapper/Makefile.am (working copy)
+@@ -47,7 +47,9 @@
+ testdata/model_label.xml \
+ testdata/tiny.txt.sqd
+
++INCLUDES=-I$(top_builddir)
+
++
+ EXTRA_DIST = ${SWIG_INTERFACE_FILES} ${EXTENSION_C_FILES} ${PYTHON_FILES} ${PYTHON_GATO_FILES} ${TESTDATA_FILES}
+
+ all: setup.py ghmm.py ${SWIG_INTERFACE_FILES}
diff --git a/sci-libs/ghmm/files/ghmm-9999-respect.patch b/sci-libs/ghmm/files/ghmm-9999-respect.patch
new file mode 100644
index 0000000..09c8721
--- /dev/null
+++ b/sci-libs/ghmm/files/ghmm-9999-respect.patch
@@ -0,0 +1,12 @@
+Index: ghmmwrapper/setup.py
+===================================================================
+--- ghmmwrapper/setup.py (revision 2332)
++++ ghmmwrapper/setup.py (working copy)
+@@ -48,7 +48,6 @@
+ include_dirs = ['..'],
+ library_dirs = ['../ghmm/.libs'],
+ libraries = ['ghmm', 'm', 'pthread', 'xml2', 'z'],
+- extra_compile_args = ["-O2", "-pipe", "-Wall"], # -g might help debugging
+ depends = ['wrapper_alphabet.i', 'wrapper_cmodel.i', 'wrapper_cseq.i',
+ 'wrapper_dmodel.i', 'wrapper_dpmodel.i', 'wrapper_dpseq.i',
+ 'wrapper_dseq.i', 'wrapper_xmlfile.i']
diff --git a/sci-libs/ghmm/ghmm-9999.ebuild b/sci-libs/ghmm/ghmm-9999.ebuild
index 514d454..5981be5 100644
--- a/sci-libs/ghmm/ghmm-9999.ebuild
+++ b/sci-libs/ghmm/ghmm-9999.ebuild
@@ -1,38 +1,67 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/mauvealigner/mauvealigner-9999.ebuild,v 1.1 2009/04/17 18:03:19 weaver Exp $
-EAPI="2"
+EAPI=5
-ESVN_REPO_URI="https://ghmm.svn.sourceforge.net/svnroot/ghmm/trunk/ghmm"
+AUTOTOOLS_AUTORECONF=true
+
+PYTHON_COMPAT=( python{2_6,2_7} )
-inherit subversion
+inherit autotools-utils distutils-r1 subversion
DESCRIPTION="General Hidden Markov Model library - efficient data structures and algorithms for HMMs"
HOMEPAGE="http://ghmm.sourceforge.net/"
SRC_URI=""
+ESVN_REPO_URI="https://ghmm.svn.sourceforge.net/svnroot/ghmm/trunk/ghmm"
LICENSE="LGPL-2.1"
SLOT="0"
-IUSE=""
KEYWORDS=""
+IUSE="gsl lapack +python static-libs"
-CDEPEND=""
-DEPEND="${CDEPEND}"
-RDEPEND="${CDEPEND}"
+RDEPEND="
+ dev-libs/libxml2
+ gsl? ( sci-libs/gsl )
+ lapack? (
+ sci-libs/clapack
+ virtual/lapack
+ )"
+DEPEND="${RDEPEND}"
S="${WORKDIR}/${PN}"
+ESVN_BOOTSTRAP="autotools-utils_src_prepare"
+
+PATCHES=(
+ "${FILESDIR}"/${P}-out-of-source.patch
+ "${FILESDIR}"/${P}-link.patch
+ "${FILESDIR}"/${P}-respect.patch
+ "${FILESDIR}"/${P}-obsolete.patch
+)
+
src_prepare() {
- ./autogen.sh
+ use python && AUTOTOOLS_IN_SOURCE_BUILD=1
+ autotools-utils_src_prepare
+ use python && cd "${S}"/ghmmwrapper && distutils-r1_python_prepare
}
src_configure() {
- econf
- # fixme: hack
- sed -i 's|^prefix = \(.*\)|prefix = ${D}/usr|' {ghmmwrapper,HMMEd}/Makefile || die
+ local myeconfargs=(
+ --without-python
+ --disable-obsolete
+ $(use_enable gsl)
+ $(use_enable lapack atlas)
+ )
+ autotools-utils_src_configure
+}
+
+src_compile() {
+ autotools-utils_src_compile
+ use python && cd "${S}"/ghmmwrapper && distutils-r1_src_compile
}
src_install() {
- einstall || die
+ autotools-utils_src_install
+ use python && cd "${S}"/ghmmwrapper && distutils-r1_src_install
}
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/ghmm/files/, sci-libs/ghmm/
@ 2014-06-02 20:28 Jauhien Piatlicki
0 siblings, 0 replies; 3+ messages in thread
From: Jauhien Piatlicki @ 2014-06-02 20:28 UTC (permalink / raw
To: gentoo-commits
commit: 1e58b1ab68dc2345b4eb70e4324a151f5ae4d2d7
Author: Jauhien Piatlicki <jauhien <AT> gentoo <DOT> org>
AuthorDate: Mon Jun 2 20:27:51 2014 +0000
Commit: Jauhien Piatlicki <jauhien <AT> gentoo <DOT> org>
CommitDate: Mon Jun 2 20:27:51 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1e58b1ab
sci-libs/ghmm: fix issue #223, patch applying failure
---
sci-libs/ghmm/ChangeLog | 6 +++++-
sci-libs/ghmm/files/ghmm-9999-clapack.patch | 11 +++++++++++
sci-libs/ghmm/files/ghmm-9999-respect.patch | 8 +++-----
sci-libs/ghmm/ghmm-9999.ebuild | 1 +
4 files changed, 20 insertions(+), 6 deletions(-)
diff --git a/sci-libs/ghmm/ChangeLog b/sci-libs/ghmm/ChangeLog
index 886fd6a..1220db1 100644
--- a/sci-libs/ghmm/ChangeLog
+++ b/sci-libs/ghmm/ChangeLog
@@ -1,7 +1,11 @@
# ChangeLog for sci-libs/ghmm
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 02 Jun 2014; Jauhien Piatlicki <jauhien@gentoo.org> ghmm-9999.ebuild,
+ +files/ghmm-9999-clapack.patch, files/ghmm-9999-respect.patch:
+ fix issue #223
+
20 Dec 2013; Justin Lecher <jlec@gentoo.org> ghmm-9999.ebuild,
+files/ghmm-9999-link.patch, +files/ghmm-9999-obsolete.patch,
+files/ghmm-9999-out-of-source.patch, +files/ghmm-9999-respect.patch:
diff --git a/sci-libs/ghmm/files/ghmm-9999-clapack.patch b/sci-libs/ghmm/files/ghmm-9999-clapack.patch
new file mode 100644
index 0000000..d36cb2a
--- /dev/null
+++ b/sci-libs/ghmm/files/ghmm-9999-clapack.patch
@@ -0,0 +1,11 @@
+--- ghmm/matrixop.c
++++ ghmm/matrixop.c
+@@ -45,7 +45,7 @@
+ #endif
+
+ #ifdef DO_WITH_ATLAS
+-#include <clapack.h>
++#include <clapack/clapack.h>
+ #endif
+
+ /*============================================================================*/
diff --git a/sci-libs/ghmm/files/ghmm-9999-respect.patch b/sci-libs/ghmm/files/ghmm-9999-respect.patch
index 09c8721..cc70a07 100644
--- a/sci-libs/ghmm/files/ghmm-9999-respect.patch
+++ b/sci-libs/ghmm/files/ghmm-9999-respect.patch
@@ -1,12 +1,10 @@
-Index: ghmmwrapper/setup.py
-===================================================================
---- ghmmwrapper/setup.py (revision 2332)
-+++ ghmmwrapper/setup.py (working copy)
+--- ghmmwrapper/setup.py
++++ ghmmwrapper/setup.py
@@ -48,7 +48,6 @@
include_dirs = ['..'],
library_dirs = ['../ghmm/.libs'],
libraries = ['ghmm', 'm', 'pthread', 'xml2', 'z'],
- extra_compile_args = ["-O2", "-pipe", "-Wall"], # -g might help debugging
- depends = ['wrapper_alphabet.i', 'wrapper_cmodel.i', 'wrapper_cseq.i',
+ depends = ['wrapper_alphabet.i', 'wrapper_bayes.i', 'wrapper_cmodel.i', 'wrapper_cseq.i',
'wrapper_dmodel.i', 'wrapper_dpmodel.i', 'wrapper_dpseq.i',
'wrapper_dseq.i', 'wrapper_xmlfile.i']
diff --git a/sci-libs/ghmm/ghmm-9999.ebuild b/sci-libs/ghmm/ghmm-9999.ebuild
index a8bcf5d..54b46f2 100644
--- a/sci-libs/ghmm/ghmm-9999.ebuild
+++ b/sci-libs/ghmm/ghmm-9999.ebuild
@@ -34,6 +34,7 @@ S="${WORKDIR}/${PN}"
ESVN_BOOTSTRAP="autotools-utils_src_prepare"
PATCHES=(
+ "${FILESDIR}"/${P}-clapack.patch
"${FILESDIR}"/${P}-out-of-source.patch
"${FILESDIR}"/${P}-link.patch
"${FILESDIR}"/${P}-respect.patch
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/ghmm/files/, sci-libs/ghmm/
@ 2021-01-05 18:05 Andrew Ammerlaan
0 siblings, 0 replies; 3+ messages in thread
From: Andrew Ammerlaan @ 2021-01-05 18:05 UTC (permalink / raw
To: gentoo-commits
commit: a312e72300ff482275764d9541e537a926956566
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 5 14:59:31 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 5 18:01:30 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a312e723
sci-libs/ghmm: drop package, py2 only latest update 2015
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-libs/ghmm/files/ghmm-9999-clapack.patch | 11 ----
sci-libs/ghmm/files/ghmm-9999-link.patch | 24 --------
sci-libs/ghmm/files/ghmm-9999-obsolete.patch | 13 -----
sci-libs/ghmm/files/ghmm-9999-out-of-source.patch | 40 --------------
sci-libs/ghmm/files/ghmm-9999-respect.patch | 10 ----
sci-libs/ghmm/ghmm-9999.ebuild | 67 -----------------------
sci-libs/ghmm/metadata.xml | 11 ----
7 files changed, 176 deletions(-)
diff --git a/sci-libs/ghmm/files/ghmm-9999-clapack.patch b/sci-libs/ghmm/files/ghmm-9999-clapack.patch
deleted file mode 100644
index d36cb2ab5..000000000
--- a/sci-libs/ghmm/files/ghmm-9999-clapack.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ghmm/matrixop.c
-+++ ghmm/matrixop.c
-@@ -45,7 +45,7 @@
- #endif
-
- #ifdef DO_WITH_ATLAS
--#include <clapack.h>
-+#include <clapack/clapack.h>
- #endif
-
- /*============================================================================*/
diff --git a/sci-libs/ghmm/files/ghmm-9999-link.patch b/sci-libs/ghmm/files/ghmm-9999-link.patch
deleted file mode 100644
index 9b4e919ec..000000000
--- a/sci-libs/ghmm/files/ghmm-9999-link.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-Index: tools/Makefile.am
-===================================================================
---- tools/Makefile.am (revision 2332)
-+++ tools/Makefile.am (working copy)
-@@ -23,5 +23,5 @@
- smix_hmm_SOURCES = smix_hmm.c
- smo2xml_SOURCES = smo2xml.c
-
--LDADD = $(top_builddir)/ghmm/.libs/libghmm.a
-+LDADD = $(top_builddir)/ghmm/libghmm.la
- bin_SCRIPTS = ghmm-config
-Index: tests/Makefile.am
-===================================================================
---- tests/Makefile.am (revision 2332)
-+++ tests/Makefile.am (working copy)
-@@ -34,7 +34,7 @@
- read_fa \
- mcmc
-
--LDADD = $(top_builddir)/ghmm/.libs/libghmm.a
-+LDADD = $(top_builddir)/ghmm/libghmm.la
-
- TESTS_ENVIRONMENT = GHMM_SILENT_TESTS
- TESTS = root_finder_test \
diff --git a/sci-libs/ghmm/files/ghmm-9999-obsolete.patch b/sci-libs/ghmm/files/ghmm-9999-obsolete.patch
deleted file mode 100644
index 2e6be54d0..000000000
--- a/sci-libs/ghmm/files/ghmm-9999-obsolete.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-Index: configure.in
-===================================================================
---- configure.in (revision 2332)
-+++ configure.in (working copy)
-@@ -293,7 +293,7 @@
- CFLAGS="$CFLAGS $LIBXML2_CFLAGS"
-
- dnl final configuration
--SUBDIRS="ghmm tools tests"
-+SUBDIRS="ghmm"
-
- dnl python wrapper can be switched on or off
- AC_ARG_WITH(python,
diff --git a/sci-libs/ghmm/files/ghmm-9999-out-of-source.patch b/sci-libs/ghmm/files/ghmm-9999-out-of-source.patch
deleted file mode 100644
index 6197d9ba1..000000000
--- a/sci-libs/ghmm/files/ghmm-9999-out-of-source.patch
+++ /dev/null
@@ -1,40 +0,0 @@
-Index: tools/Makefile.am
-===================================================================
---- tools/Makefile.am (revision 2332)
-+++ tools/Makefile.am (working copy)
-@@ -12,7 +12,7 @@
- MAINTAINERCLEANFILES = Makefile.in
-
- BUILT_SOURCES =
--INCLUDES = -I$(top_srcdir)
-+INCLUDES = -I$(top_srcdir) -I$(top_builddir)/ghmm
-
- bin_PROGRAMS = probdist cluster scluster smix_hmm $(OBSOLETE_TOOLS)
- EXTRA_PROGRAMS = smo2xml
-Index: tests/Makefile.am
-===================================================================
---- tests/Makefile.am (revision 2332)
-+++ tests/Makefile.am (working copy)
-@@ -15,7 +15,7 @@
- MAINTAINERCLEANFILES = Makefile.in
- # stuff from dejagnu
-
--INCLUDES=-I$(top_srcdir)
-+INCLUDES=-I$(top_srcdir) -I$(top_builddir)/ghmm
-
- #these tests will not be installed
- # in progress: test_sdfoba nullmodel ciscreen test_sdmodel
-Index: ghmmwrapper/Makefile.am
-===================================================================
---- ghmmwrapper/Makefile.am (revision 2332)
-+++ ghmmwrapper/Makefile.am (working copy)
-@@ -47,7 +47,9 @@
- testdata/model_label.xml \
- testdata/tiny.txt.sqd
-
-+INCLUDES=-I$(top_builddir)
-
-+
- EXTRA_DIST = ${SWIG_INTERFACE_FILES} ${EXTENSION_C_FILES} ${PYTHON_FILES} ${PYTHON_GATO_FILES} ${TESTDATA_FILES}
-
- all: setup.py ghmm.py ${SWIG_INTERFACE_FILES}
diff --git a/sci-libs/ghmm/files/ghmm-9999-respect.patch b/sci-libs/ghmm/files/ghmm-9999-respect.patch
deleted file mode 100644
index cc70a0780..000000000
--- a/sci-libs/ghmm/files/ghmm-9999-respect.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- ghmmwrapper/setup.py
-+++ ghmmwrapper/setup.py
-@@ -48,7 +48,6 @@
- include_dirs = ['..'],
- library_dirs = ['../ghmm/.libs'],
- libraries = ['ghmm', 'm', 'pthread', 'xml2', 'z'],
-- extra_compile_args = ["-O2", "-pipe", "-Wall"], # -g might help debugging
- depends = ['wrapper_alphabet.i', 'wrapper_bayes.i', 'wrapper_cmodel.i', 'wrapper_cseq.i',
- 'wrapper_dmodel.i', 'wrapper_dpmodel.i', 'wrapper_dpseq.i',
- 'wrapper_dseq.i', 'wrapper_xmlfile.i']
diff --git a/sci-libs/ghmm/ghmm-9999.ebuild b/sci-libs/ghmm/ghmm-9999.ebuild
deleted file mode 100644
index 012fc6499..000000000
--- a/sci-libs/ghmm/ghmm-9999.ebuild
+++ /dev/null
@@ -1,67 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-AUTOTOOLS_AUTORECONF=true
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit autotools-utils distutils-r1 subversion
-
-DESCRIPTION="General Hidden Markov Model library"
-HOMEPAGE="http://ghmm.sourceforge.net/"
-SRC_URI=""
-ESVN_REPO_URI="https://ghmm.svn.sourceforge.net/svnroot/ghmm/trunk/ghmm"
-
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS=""
-IUSE="gsl lapack +python static-libs"
-
-RDEPEND="
- dev-libs/libxml2
- gsl? ( sci-libs/gsl )
- lapack? (
- sci-libs/clapack
- virtual/lapack
- )"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}/${PN}"
-
-ESVN_BOOTSTRAP="autotools-utils_src_prepare"
-
-PATCHES=(
- "${FILESDIR}"/${P}-clapack.patch
- "${FILESDIR}"/${P}-out-of-source.patch
- "${FILESDIR}"/${P}-link.patch
- "${FILESDIR}"/${P}-respect.patch
- "${FILESDIR}"/${P}-obsolete.patch
-)
-
-src_prepare() {
- use python && AUTOTOOLS_IN_SOURCE_BUILD=1
- autotools-utils_src_prepare
- use python && cd "${S}"/ghmmwrapper && distutils-r1_python_prepare
-}
-
-src_configure() {
- local myeconfargs=(
- --without-python
- --disable-obsolete
- $(use_enable gsl)
- $(use_enable lapack atlas)
- )
- autotools-utils_src_configure
-}
-
-src_compile() {
- autotools-utils_src_compile
- use python && cd "${S}"/ghmmwrapper && distutils-r1_src_compile
-}
-
-src_install() {
- autotools-utils_src_install
- use python && cd "${S}"/ghmmwrapper && distutils-r1_src_install
-}
diff --git a/sci-libs/ghmm/metadata.xml b/sci-libs/ghmm/metadata.xml
deleted file mode 100644
index 5fc8aa771..000000000
--- a/sci-libs/ghmm/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci@gentoo.org</email>
- <name>Gentoo Science Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">ghmm</remote-id>
- </upstream>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 3+ messages in thread
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