[gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-genome-download/

[gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-genome-download/

[Justin Lecher]

commit:     c4af6be3da317f7336c994dffad3f27ddee52a46
Author:     freeh4cker <freeh4cker <AT> gmail <DOT> com>
AuthorDate: Fri Dec 16 13:27:37 2016 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Dec 16 13:27:37 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=c4af6be3

sci-biology/ncbi-genome-download: new ebuild (#712)

ncbi-genome-dowload first packaging.

Package-Manager: portage-2.3.2

 sci-biology/ncbi-genome-download/metadata.xml       | 12 ++++++++++++
 .../ncbi-genome-download-0.2.2.ebuild               | 21 +++++++++++++++++++++
 2 files changed, 33 insertions(+)

diff --git a/sci-biology/ncbi-genome-download/metadata.xml b/sci-biology/ncbi-genome-download/metadata.xml
new file mode 100644
index 0000000..80cc5d4
--- /dev/null
+++ b/sci-biology/ncbi-genome-download/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>freeh4cker@gmail.com</email>
+    <name>Bertrand Néron</name>
+  </maintainer>
+	<longdescription>Scripts to download genomes from the NCBI FTP servers.</longdescription>
+  <upstream>
+    <remote-id type="github">ncbi-genome-download</remote-id>
+  </upstream>
+</pkgmetadata>

diff --git a/sci-biology/ncbi-genome-download/ncbi-genome-download-0.2.2.ebuild b/sci-biology/ncbi-genome-download/ncbi-genome-download-0.2.2.ebuild
new file mode 100644
index 0000000..c4149de
--- /dev/null
+++ b/sci-biology/ncbi-genome-download/ncbi-genome-download-0.2.2.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5} )
+
+inherit distutils-r1 python-r1
+
+DESCRIPTION="Download genomes from the NCBI FTP servers"
+HOMEPAGE="https://github.com/kblin/ncbi-genome-download"
+SRC_URI="https://github.com/kblin/${PN}/archive/${PV}.tar.gz  -> ${P}.tar.gz"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"

[gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-genome-download/

[Horea Christian]

commit:     34829b30cff6c071347b5818f7530340168a4775
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Jan  2 13:36:34 2021 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Jan  3 06:25:30 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=34829b30

sci-biology/ncbi-genome-download: version bump

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 ...-0.2.2.ebuild => ncbi-genome-download-0.3.0.ebuild} | 18 +++++++++++-------
 1 file changed, 11 insertions(+), 7 deletions(-)

diff --git a/sci-biology/ncbi-genome-download/ncbi-genome-download-0.2.2.ebuild b/sci-biology/ncbi-genome-download/ncbi-genome-download-0.3.0.ebuild
similarity index 54%
rename from sci-biology/ncbi-genome-download/ncbi-genome-download-0.2.2.ebuild
rename to sci-biology/ncbi-genome-download/ncbi-genome-download-0.3.0.ebuild
index fe3d0f2d4..1afb771c5 100644
--- a/sci-biology/ncbi-genome-download/ncbi-genome-download-0.2.2.ebuild
+++ b/sci-biology/ncbi-genome-download/ncbi-genome-download-0.3.0.ebuild
@@ -1,11 +1,12 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-PYTHON_COMPAT=( python2_7 python3_{4,5} )
+PYTHON_COMPAT=( python3_{7,8,9} )
+DISTUTILS_USE_SETUPTOOLS=rdepend
 
-inherit distutils-r1 python-r1
+inherit distutils-r1
 
 DESCRIPTION="Download genomes from the NCBI FTP servers"
 HOMEPAGE="https://github.com/kblin/ncbi-genome-download"
@@ -14,7 +15,10 @@ SRC_URI="https://github.com/kblin/${PN}/archive/${PV}.tar.gz  -> ${P}.tar.gz"
 LICENSE="Apache-2.0"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
-IUSE=""
 
-DEPEND=""
-RDEPEND="${DEPEND}"
+BDEPEND="test? (
+	dev-python/requests-mock[${PYTHON_USEDEP}]
+	dev-python/pytest-mock[${PYTHON_USEDEP}]
+)"
+
+distutils_enable_tests pytest

[gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-genome-download/

[Andrew Ammerlaan]

commit:     7b5aada270f8d8cf064d7940fb9c0bdbc8b52d45
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Jan 30 15:37:37 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Jan 30 15:37:37 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=7b5aada2

sci-biology/ncbi-genome-download: remove short longdescription

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/ncbi-genome-download/metadata.xml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/sci-biology/ncbi-genome-download/metadata.xml b/sci-biology/ncbi-genome-download/metadata.xml
index 0bd027def..a394f7ee4 100644
--- a/sci-biology/ncbi-genome-download/metadata.xml
+++ b/sci-biology/ncbi-genome-download/metadata.xml
@@ -5,7 +5,6 @@
 		<email>freeh4cker@gmail.com</email>
 		<name>Bertrand Néron</name>
 	</maintainer>
-	<longdescription>Scripts to download genomes from the NCBI FTP servers.</longdescription>
 	<upstream>
 		<remote-id type="github">kblin/ncbi-genome-download</remote-id>
 	</upstream>

[gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-genome-download/

[Andrew Ammerlaan]

commit:     b506e998f9c390761f820f8ae2e27521f1c96fde
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Tue May  2 12:09:49 2023 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Tue May  2 12:15:13 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b506e998

sci-biology/ncbi-genome-download: treeclean

Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/ncbi-genome-download/metadata.xml      | 11 ----------
 .../ncbi-genome-download-0.3.0.ebuild              | 24 ----------------------
 2 files changed, 35 deletions(-)

diff --git a/sci-biology/ncbi-genome-download/metadata.xml b/sci-biology/ncbi-genome-download/metadata.xml
deleted file mode 100644
index a394f7ee4..000000000
--- a/sci-biology/ncbi-genome-download/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>freeh4cker@gmail.com</email>
-		<name>Bertrand Néron</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="github">kblin/ncbi-genome-download</remote-id>
-	</upstream>
-</pkgmetadata>

diff --git a/sci-biology/ncbi-genome-download/ncbi-genome-download-0.3.0.ebuild b/sci-biology/ncbi-genome-download/ncbi-genome-download-0.3.0.ebuild
deleted file mode 100644
index 1afb771c5..000000000
--- a/sci-biology/ncbi-genome-download/ncbi-genome-download-0.3.0.ebuild
+++ /dev/null
@@ -1,24 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7,8,9} )
-DISTUTILS_USE_SETUPTOOLS=rdepend
-
-inherit distutils-r1
-
-DESCRIPTION="Download genomes from the NCBI FTP servers"
-HOMEPAGE="https://github.com/kblin/ncbi-genome-download"
-SRC_URI="https://github.com/kblin/${PN}/archive/${PV}.tar.gz  -> ${P}.tar.gz"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-BDEPEND="test? (
-	dev-python/requests-mock[${PYTHON_USEDEP}]
-	dev-python/pytest-mock[${PYTHON_USEDEP}]
-)"
-
-distutils_enable_tests pytest