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* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2018-06-26  1:16 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2018-06-26  1:16 UTC (permalink / raw
  To: gentoo-commits

commit:     8536fe8cb8687e2b585d3f805affbf17971b9653
Author:     Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Tue Jun 26 01:16:34 2018 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Tue Jun 26 01:16:34 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=8536fe8c

sci-biology/afni: Added unstable x86 keyword

Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sci-biology/afni/afni-18.1.04.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/afni/afni-18.1.04.ebuild b/sci-biology/afni/afni-18.1.04.ebuild
index 3a646ffb7..ba1a0bcd9 100644
--- a/sci-biology/afni/afni-18.1.04.ebuild
+++ b/sci-biology/afni/afni-18.1.04.ebuild
@@ -11,7 +11,7 @@ SRC_URI="https://github.com/afni/afni/archive/AFNI_${PV}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="GPL-3+"
 SLOT="0"
-KEYWORDS="~amd64"
+KEYWORDS="~amd64 ~x86"
 IUSE=""
 
 RDEPEND="dev-libs/expat


^ permalink raw reply related	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2019-04-25  8:50 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2019-04-25  8:50 UTC (permalink / raw
  To: gentoo-commits

commit:     d4ca0e569b7e7f01c39bd08adb2b8c42efa96be0
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Apr 25 08:48:41 2019 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Apr 25 08:50:33 2019 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d4ca0e56

sci-biology/afni: dependency update

Package-Manager: Portage-2.3.63, Repoman-2.3.12
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/afni/afni-18.1.04.ebuild | 3 ++-
 sci-biology/afni/afni-19.0.21.ebuild | 1 +
 sci-biology/afni/afni-9999.ebuild    | 3 ++-
 3 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/sci-biology/afni/afni-18.1.04.ebuild b/sci-biology/afni/afni-18.1.04.ebuild
index ba1a0bcd9..c3f1be074 100644
--- a/sci-biology/afni/afni-18.1.04.ebuild
+++ b/sci-biology/afni/afni-18.1.04.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -15,6 +15,7 @@ KEYWORDS="~amd64 ~x86"
 IUSE=""
 
 RDEPEND="dev-libs/expat
+	media-libs/glu
 	media-libs/netpbm
 	media-libs/qhull
 	media-video/mpeg-tools

diff --git a/sci-biology/afni/afni-19.0.21.ebuild b/sci-biology/afni/afni-19.0.21.ebuild
index 104015772..c3f1be074 100644
--- a/sci-biology/afni/afni-19.0.21.ebuild
+++ b/sci-biology/afni/afni-19.0.21.ebuild
@@ -15,6 +15,7 @@ KEYWORDS="~amd64 ~x86"
 IUSE=""
 
 RDEPEND="dev-libs/expat
+	media-libs/glu
 	media-libs/netpbm
 	media-libs/qhull
 	media-video/mpeg-tools

diff --git a/sci-biology/afni/afni-9999.ebuild b/sci-biology/afni/afni-9999.ebuild
index e73bef8cc..e30be5542 100644
--- a/sci-biology/afni/afni-9999.ebuild
+++ b/sci-biology/afni/afni-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -16,6 +16,7 @@ KEYWORDS=""
 IUSE=""
 
 RDEPEND="dev-libs/expat
+	media-libs/glu
 	media-libs/netpbm
 	media-libs/qhull
 	media-video/mpeg-tools


^ permalink raw reply related	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2019-11-25 18:30 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2019-11-25 18:30 UTC (permalink / raw
  To: gentoo-commits

commit:     b3db3a9c0d4b6e6a7c24003a12eef93e4a79c73d
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon Nov 25 18:30:38 2019 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon Nov 25 18:30:38 2019 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b3db3a9c

sci-biology/afni: version bump 19.3.12 (non-masked version)

Package-Manager: Portage-2.3.79, Repoman-2.3.18
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/afni/afni-19.3.12.ebuild | 72 ++++++++++++++++++++++++++++++++++++
 1 file changed, 72 insertions(+)

diff --git a/sci-biology/afni/afni-19.3.12.ebuild b/sci-biology/afni/afni-19.3.12.ebuild
new file mode 100644
index 000000000..c60a87138
--- /dev/null
+++ b/sci-biology/afni/afni-19.3.12.ebuild
@@ -0,0 +1,72 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit eutils multilib pax-utils toolchain-funcs
+
+DESCRIPTION="An open-source environment for processing and displaying functional MRI data"
+HOMEPAGE="http://afni.nimh.nih.gov/"
+SRC_URI="https://github.com/afni/afni/archive/AFNI_${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="dev-libs/expat
+	media-libs/glu
+	media-libs/netpbm
+	media-libs/qhull
+	media-video/mpeg-tools
+	sci-libs/gsl
+	sys-devel/llvm:*
+	virtual/jpeg:0
+	x11-libs/libGLw
+	x11-libs/libXft
+	x11-libs/libXi
+	x11-libs/libXpm
+	x11-libs/motif[-static-libs]"
+
+# x11-libs/motif[static-libs] breaks the build.
+# See upstream discussion
+# http://afni.nimh.nih.gov/afni/community/board/read.php?1,85348,85348#msg-85348
+
+DEPEND="${RDEPEND}
+	app-shells/tcsh"
+
+S="${WORKDIR}/${PN}-AFNI_${PV}/src"
+BUILD="linux_fedora_19_64"
+BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count mpeg_encode)
+
+src_prepare() {
+	find -type f -exec sed -i -e "s/-lXp //g" {} +
+	cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile"
+	# Unbundle imcat
+	sed -e "s/ imcat / /g" \
+		-i Makefile.INCLUDE || die "Could not edit includes files."
+	sed -e "s~CC     = /usr/bin/gcc -O2 -m64~CC     = $(tc-getCC) \$(CFLAGS)~" \
+		-e "s~CCMIN  = /usr/bin/gcc -m64~CCMIN  = $(tc-getCC) \$(CFLAGS)~" \
+		-e "s~LD     = /usr/bin/gcc~LD     = $(tc-getCC)~" \
+		-e "s~AR     = /usr/bin/ar~AR     = $(tc-getAR)~" \
+		-e "s~RANLIB = /usr/bin/ranlib~RANLIB = $(tc-getRANLIB)~" \
+		-i Makefile || die "Could not edit Makefile"
+		# they provide somewhat problematic makefiles :(
+	sed -e "s~ifeq ($(CC),gcc)~ifeq (1,1)~"\
+		-i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile"
+		# upstream checks if $CC is EXACTLY gcc, else sets variables for Mac
+	find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EROOT}/usr/~g;" -i
+	eapply_user
+}
+
+src_compile() {
+	emake -j1 all plugins suma_exec
+}
+
+src_install() {
+	emake INSTALLDIR="${ED}/usr/bin" -j1 install install_plugins
+	emake INSTALLDIR="${ED}/usr/$(get_libdir)" -j1 install_lib
+	for CONFLICT in ${BIN_CONFLICTS[@]}; do
+		rm "${ED}/usr/bin/${CONFLICT}"
+	done
+}


^ permalink raw reply related	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2020-01-16 18:28 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2020-01-16 18:28 UTC (permalink / raw
  To: gentoo-commits

commit:     ab307a97b24eb48f5e7c7e7570a0486d07111148
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu Jan 16 18:27:52 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Jan 16 18:27:52 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ab307a97

sci-biology/afni: deprecated old hard-masked versions

Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/afni/afni-18.1.04.ebuild | 69 ------------------------------------
 sci-biology/afni/afni-19.0.21.ebuild | 69 ------------------------------------
 2 files changed, 138 deletions(-)

diff --git a/sci-biology/afni/afni-18.1.04.ebuild b/sci-biology/afni/afni-18.1.04.ebuild
deleted file mode 100644
index c3f1be074..000000000
--- a/sci-biology/afni/afni-18.1.04.ebuild
+++ /dev/null
@@ -1,69 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit eutils multilib pax-utils toolchain-funcs
-
-DESCRIPTION="An open-source environment for processing and displaying functional MRI data"
-HOMEPAGE="http://afni.nimh.nih.gov/"
-SRC_URI="https://github.com/afni/afni/archive/AFNI_${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="dev-libs/expat
-	media-libs/glu
-	media-libs/netpbm
-	media-libs/qhull
-	media-video/mpeg-tools
-	sci-libs/gsl
-	sys-devel/llvm:*
-	virtual/jpeg:0
-	x11-libs/libGLw
-	x11-libs/libXft
-	x11-libs/libXi
-	x11-libs/libXpm
-	x11-libs/motif[-static-libs]"
-
-# x11-libs/motif[static-libs] breaks the build.
-# See upstream discussion
-# http://afni.nimh.nih.gov/afni/community/board/read.php?1,85348,85348#msg-85348
-
-DEPEND="${RDEPEND}
-	app-shells/tcsh"
-
-S="${WORKDIR}/${PN}-AFNI_${PV}/src"
-BUILD="linux_fedora_19_64"
-BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count mpeg_encode)
-
-src_prepare() {
-	find -type f -exec sed -i -e "s/-lXp //g" {} +
-	cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile"
-	sed -e "s~CC     = /usr/bin/gcc -O2 -m64~CC     = $(tc-getCC) \$(CFLAGS)~" \
-		-e "s~CCMIN  = /usr/bin/gcc -m64~CCMIN  = $(tc-getCC) \$(CFLAGS)~" \
-		-e "s~LD     = /usr/bin/gcc~LD     = $(tc-getCC)~" \
-		-e "s~AR     = /usr/bin/ar~AR     = $(tc-getAR)~" \
-		-e "s~RANLIB = /usr/bin/ranlib~RANLIB = $(tc-getRANLIB)~" \
-		-i Makefile || die "Could not edit Makefile"
-		# they provide somewhat problematic makefiles :(
-	sed -e "s~ifeq ($(CC),gcc)~ifeq (1,1)~"\
-		-i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile"
-		# upstream checks if $CC is EXACTLY gcc, else sets variables for Mac
-	find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EROOT}/usr/~g;" -i
-	eapply_user
-}
-
-src_compile() {
-	emake -j1 all plugins suma_exec
-}
-
-src_install() {
-	emake INSTALLDIR="${ED}/usr/bin" -j1 install install_plugins
-	emake INSTALLDIR="${ED}/usr/$(get_libdir)" -j1 install_lib
-	for CONFLICT in ${BIN_CONFLICTS[@]}; do
-		rm "${ED}/usr/bin/${CONFLICT}"
-	done
-}

diff --git a/sci-biology/afni/afni-19.0.21.ebuild b/sci-biology/afni/afni-19.0.21.ebuild
deleted file mode 100644
index c3f1be074..000000000
--- a/sci-biology/afni/afni-19.0.21.ebuild
+++ /dev/null
@@ -1,69 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit eutils multilib pax-utils toolchain-funcs
-
-DESCRIPTION="An open-source environment for processing and displaying functional MRI data"
-HOMEPAGE="http://afni.nimh.nih.gov/"
-SRC_URI="https://github.com/afni/afni/archive/AFNI_${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="dev-libs/expat
-	media-libs/glu
-	media-libs/netpbm
-	media-libs/qhull
-	media-video/mpeg-tools
-	sci-libs/gsl
-	sys-devel/llvm:*
-	virtual/jpeg:0
-	x11-libs/libGLw
-	x11-libs/libXft
-	x11-libs/libXi
-	x11-libs/libXpm
-	x11-libs/motif[-static-libs]"
-
-# x11-libs/motif[static-libs] breaks the build.
-# See upstream discussion
-# http://afni.nimh.nih.gov/afni/community/board/read.php?1,85348,85348#msg-85348
-
-DEPEND="${RDEPEND}
-	app-shells/tcsh"
-
-S="${WORKDIR}/${PN}-AFNI_${PV}/src"
-BUILD="linux_fedora_19_64"
-BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count mpeg_encode)
-
-src_prepare() {
-	find -type f -exec sed -i -e "s/-lXp //g" {} +
-	cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile"
-	sed -e "s~CC     = /usr/bin/gcc -O2 -m64~CC     = $(tc-getCC) \$(CFLAGS)~" \
-		-e "s~CCMIN  = /usr/bin/gcc -m64~CCMIN  = $(tc-getCC) \$(CFLAGS)~" \
-		-e "s~LD     = /usr/bin/gcc~LD     = $(tc-getCC)~" \
-		-e "s~AR     = /usr/bin/ar~AR     = $(tc-getAR)~" \
-		-e "s~RANLIB = /usr/bin/ranlib~RANLIB = $(tc-getRANLIB)~" \
-		-i Makefile || die "Could not edit Makefile"
-		# they provide somewhat problematic makefiles :(
-	sed -e "s~ifeq ($(CC),gcc)~ifeq (1,1)~"\
-		-i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile"
-		# upstream checks if $CC is EXACTLY gcc, else sets variables for Mac
-	find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EROOT}/usr/~g;" -i
-	eapply_user
-}
-
-src_compile() {
-	emake -j1 all plugins suma_exec
-}
-
-src_install() {
-	emake INSTALLDIR="${ED}/usr/bin" -j1 install install_plugins
-	emake INSTALLDIR="${ED}/usr/$(get_libdir)" -j1 install_lib
-	for CONFLICT in ${BIN_CONFLICTS[@]}; do
-		rm "${ED}/usr/bin/${CONFLICT}"
-	done
-}


^ permalink raw reply related	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2020-06-19 16:01 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2020-06-19 16:01 UTC (permalink / raw
  To: gentoo-commits

commit:     644434c14f22d95edcf230733955076ecab0cf31
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Jun 19 16:01:29 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Jun 19 16:01:29 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=644434c1

sci-biology/afni: version bump 20.1.16

Package-Manager: Portage-2.3.101, Repoman-2.3.22
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/afni/afni-20.1.16.ebuild | 72 ++++++++++++++++++++++++++++++++++++
 1 file changed, 72 insertions(+)

diff --git a/sci-biology/afni/afni-20.1.16.ebuild b/sci-biology/afni/afni-20.1.16.ebuild
new file mode 100644
index 000000000..4953408d6
--- /dev/null
+++ b/sci-biology/afni/afni-20.1.16.ebuild
@@ -0,0 +1,72 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit eutils multilib pax-utils toolchain-funcs
+
+DESCRIPTION="An open-source environment for processing and displaying functional MRI data"
+HOMEPAGE="http://afni.nimh.nih.gov/"
+SRC_URI="https://github.com/afni/afni/archive/AFNI_${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="dev-libs/expat
+	media-libs/glu
+	media-libs/netpbm
+	media-libs/qhull
+	media-video/mpeg-tools
+	sci-libs/gsl
+	sys-devel/llvm:*
+	virtual/jpeg:0
+	x11-libs/libGLw
+	x11-libs/libXft
+	x11-libs/libXi
+	x11-libs/libXpm
+	x11-libs/motif[-static-libs]"
+
+# x11-libs/motif[static-libs] breaks the build.
+# See upstream discussion
+# http://afni.nimh.nih.gov/afni/community/board/read.php?1,85348,85348#msg-85348
+
+DEPEND="${RDEPEND}
+	app-shells/tcsh"
+
+S="${WORKDIR}/${PN}-AFNI_${PV}/src"
+BUILD="linux_fedora_19_64"
+BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count mpeg_encode)
+
+src_prepare() {
+	find -type f -exec sed -i -e "s/-lXp //g" {} +
+	cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile"
+	# Unbundle imcat
+	sed -e "s/ imcat / /g" \
+		-i Makefile.INCLUDE || die "Could not edit includes files."
+	sed -e "s~CC     = /usr/bin/gcc -O2 -m64~CC     = $(tc-getCC) \$(CFLAGS)~" \
+		-e "s~CCMIN  = /usr/bin/gcc -m64~CCMIN  = $(tc-getCC) \$(CFLAGS)~" \
+		-e "s~LD     = /usr/bin/gcc~LD     = $(tc-getCC)~" \
+		-e "s~AR     = /usr/bin/ar~AR     = $(tc-getAR)~" \
+		-e "s~RANLIB = /usr/bin/ranlib~RANLIB = $(tc-getRANLIB)~" \
+		-i Makefile || die "Could not edit Makefile"
+		# they provide somewhat problematic makefiles :(
+	sed -e "s~ifeq ($(CC),gcc)~ifeq (1,1)~"\
+		-i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile"
+		# upstream checks if $CC is EXACTLY gcc, else sets variables for Mac
+	find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EROOT}/usr/~g;" -i
+	eapply_user
+}
+
+src_compile() {
+	emake -j1 all plugins suma_exec
+}
+
+src_install() {
+	emake INSTALLDIR="${ED}/usr/bin" -j1 install install_plugins
+	emake INSTALLDIR="${ED}/usr/$(get_libdir)" install_lib
+	for CONFLICT in ${BIN_CONFLICTS[@]}; do
+		rm "${ED}/usr/bin/${CONFLICT}"
+	done
+}


^ permalink raw reply related	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2021-01-03  3:46 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2021-01-03  3:46 UTC (permalink / raw
  To: gentoo-commits

commit:     5c191a775d0dedfe49d26f2bc38342791f8750b7
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Jan  3 03:46:05 2021 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Jan  3 03:46:05 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=5c191a77

sci-biology/afni: version bump 20.3.03

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/afni/afni-20.3.03.ebuild | 77 ++++++++++++++++++++++++++++++++++++
 1 file changed, 77 insertions(+)

diff --git a/sci-biology/afni/afni-20.3.03.ebuild b/sci-biology/afni/afni-20.3.03.ebuild
new file mode 100644
index 000000000..ed100cb3c
--- /dev/null
+++ b/sci-biology/afni/afni-20.3.03.ebuild
@@ -0,0 +1,77 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit eutils multilib pax-utils toolchain-funcs
+
+DESCRIPTION="An open-source environment for processing and displaying functional MRI data"
+HOMEPAGE="http://afni.nimh.nih.gov/"
+SRC_URI="https://github.com/afni/afni/archive/AFNI_${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="dev-libs/expat
+	media-libs/glu
+	media-libs/netpbm
+	media-libs/qhull
+	media-video/mpeg-tools
+	sci-libs/gsl
+	sys-devel/llvm:*
+	virtual/jpeg:0
+	x11-libs/libGLw
+	x11-libs/libXft
+	x11-libs/libXi
+	x11-libs/libXpm
+	x11-libs/motif[-static-libs]"
+
+# x11-libs/motif[static-libs] breaks the build.
+# See upstream discussion
+# http://afni.nimh.nih.gov/afni/community/board/read.php?1,85348,85348#msg-85348
+
+DEPEND="${RDEPEND}
+	app-shells/tcsh"
+
+S="${WORKDIR}/${PN}-AFNI_${PV}/src"
+BUILD="linux_fedora_19_64"
+BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count mpeg_encode)
+
+#PATCHES=(
+#	"${FILESDIR}/${P}-python.patch"
+#)
+
+src_prepare() {
+	eapply "${FILESDIR}/${P}-python.patch" || die
+	find -type f -exec sed -i -e "s/-lXp //g" {} +
+	cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile"
+	# Unbundle imcat
+	sed -e "s/ imcat / /g" \
+		-i Makefile.INCLUDE || die "Could not edit includes files."
+	sed -e "s~CC     = /usr/bin/gcc -O2 -m64~CC     = $(tc-getCC) \$(CFLAGS)~" \
+		-e "s~CCMIN  = /usr/bin/gcc -m64~CCMIN  = $(tc-getCC) \$(CFLAGS)~" \
+		-e "s~LD     = /usr/bin/gcc~LD     = $(tc-getCC)~" \
+		-e "s~AR     = /usr/bin/ar~AR     = $(tc-getAR)~" \
+		-e "s~RANLIB = /usr/bin/ranlib~RANLIB = $(tc-getRANLIB)~" \
+		-i Makefile || die "Could not edit Makefile"
+		# they provide somewhat problematic makefiles :(
+	sed -e "s~ifeq ($(CC),gcc)~ifeq (1,1)~"\
+		-i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile"
+		# upstream checks if $CC is EXACTLY gcc, else sets variables for Mac
+	find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EROOT}/usr/~g;" -i
+	default
+}
+
+src_compile() {
+	emake -j1 all plugins suma_exec
+}
+
+src_install() {
+	emake INSTALLDIR="${ED}/usr/bin" -j1 install install_plugins
+	emake INSTALLDIR="${ED}/usr/$(get_libdir)" install_lib
+	for CONFLICT in ${BIN_CONFLICTS[@]}; do
+		rm "${ED}/usr/bin/${CONFLICT}"
+	done
+}


^ permalink raw reply related	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2021-01-03  3:46 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2021-01-03  3:46 UTC (permalink / raw
  To: gentoo-commits

commit:     f225be3cfea18d5fedcc3c7f77f402effa123dea
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Jan  3 03:44:38 2021 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Jan  3 03:44:38 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f225be3c

sci-biology/afni: applying patch at start of prepare phase

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/afni/afni-20.1.16.ebuild | 7 ++-----
 1 file changed, 2 insertions(+), 5 deletions(-)

diff --git a/sci-biology/afni/afni-20.1.16.ebuild b/sci-biology/afni/afni-20.1.16.ebuild
index 09e2b7def..da68d2d6d 100644
--- a/sci-biology/afni/afni-20.1.16.ebuild
+++ b/sci-biology/afni/afni-20.1.16.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -39,11 +39,8 @@ S="${WORKDIR}/${PN}-AFNI_${PV}/src"
 BUILD="linux_fedora_19_64"
 BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count mpeg_encode)
 
-PATCHES=(
-	"${FILESDIR}/${P}-python.patch"
-)
-
 src_prepare() {
+	eapply "${FILESDIR}/${P}-python.patch" || die
 	find -type f -exec sed -i -e "s/-lXp //g" {} +
 	cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile"
 	# Unbundle imcat


^ permalink raw reply related	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2022-04-01  8:22 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2022-04-01  8:22 UTC (permalink / raw
  To: gentoo-commits

commit:     e3ed6312407f673e0d8d544fd54d625b6492a27a
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Apr  1 08:22:33 2022 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Apr  1 08:22:33 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e3ed6312

sci-biology/afni: cleaned up whitespace and unneeded code

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/afni/afni-20.1.16.ebuild | 8 ++++----
 sci-biology/afni/afni-20.3.03.ebuild | 6 +-----
 2 files changed, 5 insertions(+), 9 deletions(-)

diff --git a/sci-biology/afni/afni-20.1.16.ebuild b/sci-biology/afni/afni-20.1.16.ebuild
index 98fdb2397..a95a34cfb 100644
--- a/sci-biology/afni/afni-20.1.16.ebuild
+++ b/sci-biology/afni/afni-20.1.16.ebuild
@@ -46,17 +46,17 @@ src_prepare() {
 	# Unbundle imcat
 	sed -e "s/ imcat / /g" \
 		-i Makefile.INCLUDE || die "Could not edit includes files."
-	sed -e "s~CC	 = /usr/bin/gcc -O2 -m64~CC  = $(tc-getCC) \$(CFLAGS)~" \
+	sed -e "s~CC	 = /usr/bin/gcc -O2 -m64~CC	 = $(tc-getCC) \$(CFLAGS)~" \
 		-e "s~CCMIN  = /usr/bin/gcc -m64~CCMIN  = $(tc-getCC) \$(CFLAGS)~" \
-		-e "s~LD	 = /usr/bin/gcc~LD   = $(tc-getCC)~" \
-		-e "s~AR	 = /usr/bin/ar~AR	= $(tc-getAR)~" \
+		-e "s~LD	 = /usr/bin/gcc~LD	 = $(tc-getCC)~" \
+		-e "s~AR	 = /usr/bin/ar~AR	 = $(tc-getAR)~" \
 		-e "s~RANLIB = /usr/bin/ranlib~RANLIB = $(tc-getRANLIB)~" \
 		-i Makefile || die "Could not edit Makefile"
 		# they provide somewhat problematic makefiles :(
 	sed -e "s~ifeq ($(CC),gcc)~ifeq (1,1)~"\
 		-i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile"
 		# upstream checks if $CC is EXACTLY gcc, else sets variables for Mac
-	find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EROOT}/usr/~g;" -i
+	find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EPREFIX}/usr/~g;" -i
 	default
 }
 

diff --git a/sci-biology/afni/afni-20.3.03.ebuild b/sci-biology/afni/afni-20.3.03.ebuild
index fab7446bf..a95a34cfb 100644
--- a/sci-biology/afni/afni-20.3.03.ebuild
+++ b/sci-biology/afni/afni-20.3.03.ebuild
@@ -39,10 +39,6 @@ S="${WORKDIR}/${PN}-AFNI_${PV}/src"
 BUILD="linux_fedora_19_64"
 BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count mpeg_encode)
 
-#PATCHES=(
-#   "${FILESDIR}/${P}-python.patch"
-#)
-
 src_prepare() {
 	eapply "${FILESDIR}/${P}-python.patch" || die
 	find -type f -exec sed -i -e "s/-lXp //g" {} +
@@ -60,7 +56,7 @@ src_prepare() {
 	sed -e "s~ifeq ($(CC),gcc)~ifeq (1,1)~"\
 		-i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile"
 		# upstream checks if $CC is EXACTLY gcc, else sets variables for Mac
-	find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EROOT}/usr/~g;" -i
+	find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EPREFIX}/usr/~g;" -i
 	default
 }
 


^ permalink raw reply related	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2022-04-01 15:41 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2022-04-01 15:41 UTC (permalink / raw
  To: gentoo-commits

commit:     e076bdf17bc9d27acebb0294bc5fab198ffd91f5
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Apr  1 15:41:23 2022 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Apr  1 15:41:23 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e076bdf1

sci-biology/afni: bump ebuild still fails

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/afni/afni-22.0.21.ebuild | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/sci-biology/afni/afni-22.0.21.ebuild b/sci-biology/afni/afni-22.0.21.ebuild
index 5a015dafc..d8ad693bf 100644
--- a/sci-biology/afni/afni-22.0.21.ebuild
+++ b/sci-biology/afni/afni-22.0.21.ebuild
@@ -12,7 +12,9 @@ S="${WORKDIR}/${PN}-AFNI_${PV}/src"
 
 LICENSE="GPL-3+"
 SLOT="0"
-KEYWORDS="~amd64"
+# Depends on some python version withoug pulling it in
+# `thd_selenium.c:18:10: fatal error: Python.h: No such file or directory`
+KEYWORDS=""
 
 RDEPEND="
 	dev-libs/libf2c


^ permalink raw reply related	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2022-04-03  8:11 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2022-04-03  8:11 UTC (permalink / raw
  To: gentoo-commits

commit:     65c6f547d13f0bf646544e6aef04a70e0d8976c3
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Apr  3 08:11:12 2022 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Apr  3 08:11:12 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=65c6f547

sci-biology/afni: corrected patch application

ebuild still fails, though, log included in comment and reposited here:
https://ppb.chymera.eu/4223de.log

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/afni/afni-22.0.21.ebuild | 10 +++-------
 1 file changed, 3 insertions(+), 7 deletions(-)

diff --git a/sci-biology/afni/afni-22.0.21.ebuild b/sci-biology/afni/afni-22.0.21.ebuild
index d8ad693bf..6694c9525 100644
--- a/sci-biology/afni/afni-22.0.21.ebuild
+++ b/sci-biology/afni/afni-22.0.21.ebuild
@@ -12,8 +12,7 @@ S="${WORKDIR}/${PN}-AFNI_${PV}/src"
 
 LICENSE="GPL-3+"
 SLOT="0"
-# Depends on some python version withoug pulling it in
-# `thd_selenium.c:18:10: fatal error: Python.h: No such file or directory`
+# SUMA error: https://ppb.chymera.eu/4223de.log
 KEYWORDS=""
 
 RDEPEND="
@@ -38,15 +37,12 @@ DEPEND="${RDEPEND}
 	app-shells/tcsh
 "
 
-PATCHES=(
-	# Drop python2.7 dependency
-	"${FILESDIR}/${P}-python.patch"
-)
-
 BUILD="linux_fedora_19_64"
 BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count)
 
 src_prepare() {
+	# more easily applied here than via PATCHES at phase end.
+	eapply "${FILESDIR}/${P}-python.patch" || die
 	find -type f -exec sed -i -e "s/-lXp //g" {} + || die
 	cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile"
 	# Unbundle imcat


^ permalink raw reply related	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2024-03-22 21:34 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2024-03-22 21:34 UTC (permalink / raw
  To: gentoo-commits

commit:     bf635e42b9e981623432224920b21940f4feda56
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Mar 22 21:18:40 2024 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Mar 22 21:18:40 2024 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=bf635e42

sci-biology/afni: removed deprecated deps

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/afni/{afni-24.0.04.ebuild => afni-24.0.04-r1.ebuild} | 1 -
 sci-biology/afni/{afni-24.0.08.ebuild => afni-24.0.08-r1.ebuild} | 1 -
 2 files changed, 2 deletions(-)

diff --git a/sci-biology/afni/afni-24.0.04.ebuild b/sci-biology/afni/afni-24.0.04-r1.ebuild
similarity index 98%
rename from sci-biology/afni/afni-24.0.04.ebuild
rename to sci-biology/afni/afni-24.0.04-r1.ebuild
index c00ef846f..557fbd579 100644
--- a/sci-biology/afni/afni-24.0.04.ebuild
+++ b/sci-biology/afni/afni-24.0.04-r1.ebuild
@@ -40,7 +40,6 @@ RDEPEND="
 	sci-libs/gts
 	sys-devel/llvm:*
 	sys-libs/libomp
-	dev-libs/libpthread-stubs
 	virtual/jpeg-compat:62
 	x11-libs/libGLw
 	x11-libs/libXft

diff --git a/sci-biology/afni/afni-24.0.08.ebuild b/sci-biology/afni/afni-24.0.08-r1.ebuild
similarity index 99%
rename from sci-biology/afni/afni-24.0.08.ebuild
rename to sci-biology/afni/afni-24.0.08-r1.ebuild
index 75ff5b6b6..20293877f 100644
--- a/sci-biology/afni/afni-24.0.08.ebuild
+++ b/sci-biology/afni/afni-24.0.08-r1.ebuild
@@ -40,7 +40,6 @@ RDEPEND="
 	sci-libs/gts
 	sys-devel/llvm:*
 	sys-libs/libomp
-	dev-libs/libpthread-stubs
 	virtual/jpeg-compat:62
 	x11-libs/libGLw
 	x11-libs/libXft


^ permalink raw reply related	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2024-05-24 13:52 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2024-05-24 13:52 UTC (permalink / raw
  To: gentoo-commits

commit:     b5ce4a1154c05787fe20c3074b2bc91f5146bacf
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri May 24 13:49:20 2024 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri May 24 13:49:20 2024 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b5ce4a11

sci-biology/afni: update DESCRIPTION, HOMEPAGE

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/afni/afni-24.0.04-r1.ebuild | 12 ++++++------
 sci-biology/afni/afni-24.0.08-r1.ebuild | 12 ++++++------
 2 files changed, 12 insertions(+), 12 deletions(-)

diff --git a/sci-biology/afni/afni-24.0.04-r1.ebuild b/sci-biology/afni/afni-24.0.04-r1.ebuild
index 557fbd579..c5adfb6d8 100644
--- a/sci-biology/afni/afni-24.0.04-r1.ebuild
+++ b/sci-biology/afni/afni-24.0.04-r1.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{10..12} )
+PYTHON_COMPAT=( python3_{10..13} )
 
 DISTUTILS_USE_PEP517=setuptools
 inherit cmake distutils-r1 toolchain-funcs
@@ -12,16 +12,18 @@ GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
 NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
 GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7"
 
-DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="http://stnava.github.io/ANTs/"
+DESCRIPTION="Analysis of Functional Neuroimages by NIMH"
+HOMEPAGE="https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/"
 SRC_URI="
 	https://github.com/afni/afni/archive/refs/tags/AFNI_${PV}.tar.gz -> ${P}.gh.tar.gz
 	https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz -> nifti-${NIFTI_HASH}.tar.gz
 	https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz -> gifti-${GIFTI_HASH}.tar.gz
 	"
 
-SLOT="0"
+S="${WORKDIR}/afni-AFNI_${PV}"
+
 LICENSE="GPL-3+"
+SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE="test whirlgif"
 RESTRICT="!test? ( test )"
@@ -54,8 +56,6 @@ DEPEND="
 	app-shells/tcsh
 	"
 
-S="${WORKDIR}/afni-AFNI_${PV}"
-
 src_prepare() {
 	tar xf "${DISTDIR}/nifti-${NIFTI_HASH}.tar.gz" || die
 	tar xf "${DISTDIR}/gifti-${GIFTI_HASH}.tar.gz" || die

diff --git a/sci-biology/afni/afni-24.0.08-r1.ebuild b/sci-biology/afni/afni-24.0.08-r1.ebuild
index 20293877f..21ecf81a1 100644
--- a/sci-biology/afni/afni-24.0.08-r1.ebuild
+++ b/sci-biology/afni/afni-24.0.08-r1.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{10..12} )
+PYTHON_COMPAT=( python3_{10..13} )
 
 DISTUTILS_USE_PEP517=setuptools
 inherit cmake distutils-r1 toolchain-funcs
@@ -12,16 +12,18 @@ GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
 NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
 GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7"
 
-DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
-HOMEPAGE="http://stnava.github.io/ANTs/"
+DESCRIPTION="Analysis of Functional Neuroimages by NIMH"
+HOMEPAGE="https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/"
 SRC_URI="
 	https://github.com/afni/afni/archive/refs/tags/AFNI_${PV}.tar.gz -> ${P}.gh.tar.gz
 	https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz -> nifti-${NIFTI_HASH}.tar.gz
 	https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz -> gifti-${GIFTI_HASH}.tar.gz
 	"
 
-SLOT="0"
+S="${WORKDIR}/afni-AFNI_${PV}"
+
 LICENSE="GPL-3+"
+SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE="test whirlgif"
 RESTRICT="!test? ( test )"
@@ -57,8 +59,6 @@ DEPEND="
 #Update jpeg-compat to virtual/jpeg:0
 # look for xmhtlm
 
-S="${WORKDIR}/afni-AFNI_${PV}"
-
 	#tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die
 src_prepare() {
 	tar xf "${DISTDIR}/nifti-${NIFTI_HASH}.tar.gz" || die


^ permalink raw reply related	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2024-05-29  8:33 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2024-05-29  8:33 UTC (permalink / raw
  To: gentoo-commits

commit:     6d9b772f10ed51682604e5c1cb6f9c278a5c6c72
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Wed May 29 08:31:29 2024 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Wed May 29 08:31:29 2024 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=6d9b772f

sci-biology/afni: correct version annotation

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/afni/afni-24.0.08-r3.ebuild | 125 ++++++++++++++++++++++++++++++++
 1 file changed, 125 insertions(+)

diff --git a/sci-biology/afni/afni-24.0.08-r3.ebuild b/sci-biology/afni/afni-24.0.08-r3.ebuild
new file mode 100644
index 000000000..12d6c8f87
--- /dev/null
+++ b/sci-biology/afni/afni-24.0.08-r3.ebuild
@@ -0,0 +1,125 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..13} )
+
+DISTUTILS_USE_PEP517=setuptools
+inherit cmake distutils-r1 toolchain-funcs
+
+GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
+NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
+GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7"
+
+DESCRIPTION="Analysis of Functional Neuroimages by NIMH"
+HOMEPAGE="https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/"
+SRC_URI="
+	https://github.com/afni/afni/archive/refs/tags/AFNI_${PV}.tar.gz -> ${P}.gh.tar.gz
+	https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz -> nifti-${NIFTI_HASH}.tar.gz
+	https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz -> gifti-${GIFTI_HASH}.tar.gz
+	"
+
+S="${WORKDIR}/afni-AFNI_${PV}"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test whirlgif"
+RESTRICT="!test? ( test )"
+
+RDEPEND="
+	dev-build/ninja
+	dev-libs/expat
+	dev-libs/glib:2
+	dev-libs/libf2c
+	media-libs/freeglut
+	media-libs/glu
+	media-libs/netpbm
+	media-libs/qhull
+	media-video/mpeg-tools
+	sci-biology/afni-datasets
+	sci-libs/gsl
+	sci-libs/gts
+	sys-devel/llvm:*
+	sys-libs/libomp
+	virtual/jpeg-compat:62
+	x11-libs/libGLw
+	x11-libs/libXft
+	x11-libs/libXi
+	x11-libs/libXmu
+	x11-libs/libXpm
+	x11-libs/libXt
+	x11-libs/motif[-static-libs]
+	"
+DEPEND="
+	${RDEPEND}
+	app-shells/tcsh
+	"
+# Prospectively:
+#Update jpeg-compat to virtual/jpeg:0
+# look for xmhtlm
+
+	#tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die
+src_prepare() {
+	tar xf "${DISTDIR}/nifti-${NIFTI_HASH}.tar.gz" || die
+	tar xf "${DISTDIR}/gifti-${GIFTI_HASH}.tar.gz" || die
+	cmake_src_prepare
+	default
+	}
+
+src_configure() {
+	if use !whirlgif; then
+		eapply "${FILESDIR}/${PN}-24.0.04-whirlgif.patch"
+	fi
+	# Fix AFNI version, no better way seemed to work
+	sed -i -e "s/GIT_REPO_VERSION \"99\.99\.99\"/GIT_REPO_VERSION ${PV}/g" cmake/get_git_repo_version.cmake
+	export CFLAGS="-pthread ${CFLAGS}"
+	local mycmakeargs=(
+		-DLIBDIR=/usr/$(get_libdir)
+		-DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
+		-DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
+		-DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir)
+		-DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
+		-DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir)
+		-DCOMP_COREBINARIES=ON
+		-DUSE_SYSTEM_NIFTI=OFF
+		-DUSE_SYSTEM_GIFTI=OFF
+		-DUSE_SYSTEM_XMHTML=OFF
+		-DUSE_SYSTEM_GTS=ON
+		-DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/nifti_clib-${NIFTI_HASH}"
+		-DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/gifti_clib-${GIFTI_HASH}"
+		-DCOMP_GUI=ON
+		-DCOMP_PLUGINS=ON
+		-DUSE_OMP=ON
+		-DCOMP_PYTHON=OFF
+		-DUSE_SYSTEM_F2C=ON
+	)
+	tc-export CC
+	cmake_src_configure
+}
+
+src_compile() {
+	cmake_src_compile
+	pushd src/python_scripts
+		distutils-r1_src_compile
+	popd
+}
+
+src_install() {
+	cmake_src_install
+	pushd src/python_scripts
+		distutils-r1_src_install
+	popd
+	cd "${D}"
+	rm usr/bin/mpeg_encode
+	doenvd "${FILESDIR}/97afni"
+}
+
+pkg_postinst() {
+	echo
+	einfo "Please run the following commands if you"
+	einfo "intend to use afni binaries from an existing shell:"
+	einfo "source /etc/profile"
+	echo
+}


^ permalink raw reply related	[flat|nested] 14+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/afni/
@ 2024-05-30 21:55 Horea Christian
  0 siblings, 0 replies; 14+ messages in thread
From: Horea Christian @ 2024-05-30 21:55 UTC (permalink / raw
  To: gentoo-commits

commit:     be6977739d20a779f291c66eefb9cc896ff2e4e0
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Thu May 30 21:55:24 2024 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu May 30 21:55:24 2024 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=be697773

sci-biology/afni: drop 24.0.04-r1, 24.0.08-r1, 24.0.08-r2

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/afni/afni-24.0.04-r1.ebuild | 110 ----------------------------
 sci-biology/afni/afni-24.0.08-r1.ebuild | 114 -----------------------------
 sci-biology/afni/afni-24.0.08-r2.ebuild | 124 --------------------------------
 3 files changed, 348 deletions(-)

diff --git a/sci-biology/afni/afni-24.0.04-r1.ebuild b/sci-biology/afni/afni-24.0.04-r1.ebuild
deleted file mode 100644
index c5adfb6d8..000000000
--- a/sci-biology/afni/afni-24.0.04-r1.ebuild
+++ /dev/null
@@ -1,110 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..13} )
-
-DISTUTILS_USE_PEP517=setuptools
-inherit cmake distutils-r1 toolchain-funcs
-
-GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
-NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
-GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7"
-
-DESCRIPTION="Analysis of Functional Neuroimages by NIMH"
-HOMEPAGE="https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/"
-SRC_URI="
-	https://github.com/afni/afni/archive/refs/tags/AFNI_${PV}.tar.gz -> ${P}.gh.tar.gz
-	https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz -> nifti-${NIFTI_HASH}.tar.gz
-	https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz -> gifti-${GIFTI_HASH}.tar.gz
-	"
-
-S="${WORKDIR}/afni-AFNI_${PV}"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test whirlgif"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
-	dev-libs/glib:2
-	dev-libs/libf2c
-	dev-libs/expat
-	dev-build/ninja
-	media-libs/freeglut
-	media-libs/glu
-	media-libs/netpbm
-	media-libs/qhull
-	media-video/mpeg-tools
-	sci-libs/gsl
-	sci-libs/gts
-	sys-devel/llvm:*
-	sys-libs/libomp
-	virtual/jpeg-compat:62
-	x11-libs/libGLw
-	x11-libs/libXft
-	x11-libs/libXi
-	x11-libs/libXmu
-	x11-libs/libXpm
-	x11-libs/libXt
-	x11-libs/motif[-static-libs]
-	"
-DEPEND="
-	${RDEPEND}
-	app-shells/tcsh
-	"
-
-src_prepare() {
-	tar xf "${DISTDIR}/nifti-${NIFTI_HASH}.tar.gz" || die
-	tar xf "${DISTDIR}/gifti-${GIFTI_HASH}.tar.gz" || die
-	cmake_src_prepare
-	default
-	}
-
-src_configure() {
-	if use !whirlgif; then
-		eapply "${FILESDIR}/${P}-whirlgif.patch"
-	fi
-	export CFLAGS="-pthread ${CFLAGS}"
-	export GIT_REPO_VERSION=3.0.1.1
-	local mycmakeargs=(
-		-DLIBDIR=/usr/$(get_libdir)
-		-DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
-		-DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
-		-DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir)
-		-DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
-		-DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir)
-		-DCOMP_COREBINARIES=ON
-		-DUSE_SYSTEM_NIFTI=OFF
-		-DUSE_SYSTEM_GIFTI=OFF
-		-DUSE_SYSTEM_XMHTML=OFF
-		-DUSE_SYSTEM_GTS=ON
-		-DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/nifti_clib-${NIFTI_HASH}"
-		-DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/gifti_clib-${GIFTI_HASH}"
-		-DCOMP_GUI=ON
-		-DCOMP_PLUGINS=ON
-		-DUSE_OMP=ON
-		-DCOMP_PYTHON=OFF
-		-DUSE_SYSTEM_F2C=ON
-	)
-	tc-export CC
-	cmake_src_configure
-}
-
-src_compile() {
-	cmake_src_compile
-	pushd src/python_scripts
-		distutils-r1_src_compile
-	popd
-}
-
-src_install() {
-	cmake_src_install
-	pushd src/python_scripts
-		distutils-r1_src_install
-	popd
-	cd "${D}"
-	rm usr/bin/mpeg_encode
-}

diff --git a/sci-biology/afni/afni-24.0.08-r1.ebuild b/sci-biology/afni/afni-24.0.08-r1.ebuild
deleted file mode 100644
index 21ecf81a1..000000000
--- a/sci-biology/afni/afni-24.0.08-r1.ebuild
+++ /dev/null
@@ -1,114 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..13} )
-
-DISTUTILS_USE_PEP517=setuptools
-inherit cmake distutils-r1 toolchain-funcs
-
-GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
-NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
-GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7"
-
-DESCRIPTION="Analysis of Functional Neuroimages by NIMH"
-HOMEPAGE="https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/"
-SRC_URI="
-	https://github.com/afni/afni/archive/refs/tags/AFNI_${PV}.tar.gz -> ${P}.gh.tar.gz
-	https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz -> nifti-${NIFTI_HASH}.tar.gz
-	https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz -> gifti-${GIFTI_HASH}.tar.gz
-	"
-
-S="${WORKDIR}/afni-AFNI_${PV}"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test whirlgif"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
-	dev-libs/glib:2
-	dev-libs/libf2c
-	dev-libs/expat
-	dev-build/ninja
-	media-libs/freeglut
-	media-libs/glu
-	media-libs/netpbm
-	media-libs/qhull
-	media-video/mpeg-tools
-	sci-libs/gsl
-	sci-libs/gts
-	sys-devel/llvm:*
-	sys-libs/libomp
-	virtual/jpeg-compat:62
-	x11-libs/libGLw
-	x11-libs/libXft
-	x11-libs/libXi
-	x11-libs/libXmu
-	x11-libs/libXpm
-	x11-libs/libXt
-	x11-libs/motif[-static-libs]
-	"
-DEPEND="
-	${RDEPEND}
-	app-shells/tcsh
-	"
-# Prospectively:
-#Update jpeg-compat to virtual/jpeg:0
-# look for xmhtlm
-
-	#tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die
-src_prepare() {
-	tar xf "${DISTDIR}/nifti-${NIFTI_HASH}.tar.gz" || die
-	tar xf "${DISTDIR}/gifti-${GIFTI_HASH}.tar.gz" || die
-	cmake_src_prepare
-	default
-	}
-
-src_configure() {
-	if use !whirlgif; then
-		eapply "${FILESDIR}/${PN}-24.0.04-whirlgif.patch"
-	fi
-	export CFLAGS="-pthread ${CFLAGS}"
-	export GIT_REPO_VERSION=3.0.1.1
-	local mycmakeargs=(
-		-DLIBDIR=/usr/$(get_libdir)
-		-DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
-		-DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
-		-DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir)
-		-DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
-		-DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir)
-		-DCOMP_COREBINARIES=ON
-		-DUSE_SYSTEM_NIFTI=OFF
-		-DUSE_SYSTEM_GIFTI=OFF
-		-DUSE_SYSTEM_XMHTML=OFF
-		-DUSE_SYSTEM_GTS=ON
-		-DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/nifti_clib-${NIFTI_HASH}"
-		-DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/gifti_clib-${GIFTI_HASH}"
-		-DCOMP_GUI=ON
-		-DCOMP_PLUGINS=ON
-		-DUSE_OMP=ON
-		-DCOMP_PYTHON=OFF
-		-DUSE_SYSTEM_F2C=ON
-	)
-	tc-export CC
-	cmake_src_configure
-}
-
-src_compile() {
-	cmake_src_compile
-	pushd src/python_scripts
-		distutils-r1_src_compile
-	popd
-}
-
-src_install() {
-	cmake_src_install
-	pushd src/python_scripts
-		distutils-r1_src_install
-	popd
-	cd "${D}"
-	rm usr/bin/mpeg_encode
-}

diff --git a/sci-biology/afni/afni-24.0.08-r2.ebuild b/sci-biology/afni/afni-24.0.08-r2.ebuild
deleted file mode 100644
index 270100c0b..000000000
--- a/sci-biology/afni/afni-24.0.08-r2.ebuild
+++ /dev/null
@@ -1,124 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..13} )
-
-DISTUTILS_USE_PEP517=setuptools
-inherit cmake distutils-r1 toolchain-funcs
-
-GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
-NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
-GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7"
-
-DESCRIPTION="Analysis of Functional Neuroimages by NIMH"
-HOMEPAGE="https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/"
-SRC_URI="
-	https://github.com/afni/afni/archive/refs/tags/AFNI_${PV}.tar.gz -> ${P}.gh.tar.gz
-	https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz -> nifti-${NIFTI_HASH}.tar.gz
-	https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz -> gifti-${GIFTI_HASH}.tar.gz
-	"
-
-S="${WORKDIR}/afni-AFNI_${PV}"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test whirlgif"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
-	dev-build/ninja
-	dev-libs/expat
-	dev-libs/glib:2
-	dev-libs/libf2c
-	media-libs/freeglut
-	media-libs/glu
-	media-libs/netpbm
-	media-libs/qhull
-	media-video/mpeg-tools
-	sci-biology/afni-datasets
-	sci-libs/gsl
-	sci-libs/gts
-	sys-devel/llvm:*
-	sys-libs/libomp
-	virtual/jpeg-compat:62
-	x11-libs/libGLw
-	x11-libs/libXft
-	x11-libs/libXi
-	x11-libs/libXmu
-	x11-libs/libXpm
-	x11-libs/libXt
-	x11-libs/motif[-static-libs]
-	"
-DEPEND="
-	${RDEPEND}
-	app-shells/tcsh
-	"
-# Prospectively:
-#Update jpeg-compat to virtual/jpeg:0
-# look for xmhtlm
-
-	#tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die
-src_prepare() {
-	tar xf "${DISTDIR}/nifti-${NIFTI_HASH}.tar.gz" || die
-	tar xf "${DISTDIR}/gifti-${GIFTI_HASH}.tar.gz" || die
-	cmake_src_prepare
-	default
-	}
-
-src_configure() {
-	if use !whirlgif; then
-		eapply "${FILESDIR}/${PN}-24.0.04-whirlgif.patch"
-	fi
-	export CFLAGS="-pthread ${CFLAGS}"
-	export GIT_REPO_VERSION=3.0.1.1
-	local mycmakeargs=(
-		-DLIBDIR=/usr/$(get_libdir)
-		-DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
-		-DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
-		-DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir)
-		-DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
-		-DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir)
-		-DCOMP_COREBINARIES=ON
-		-DUSE_SYSTEM_NIFTI=OFF
-		-DUSE_SYSTEM_GIFTI=OFF
-		-DUSE_SYSTEM_XMHTML=OFF
-		-DUSE_SYSTEM_GTS=ON
-		-DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/nifti_clib-${NIFTI_HASH}"
-		-DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/gifti_clib-${GIFTI_HASH}"
-		-DCOMP_GUI=ON
-		-DCOMP_PLUGINS=ON
-		-DUSE_OMP=ON
-		-DCOMP_PYTHON=OFF
-		-DUSE_SYSTEM_F2C=ON
-	)
-	tc-export CC
-	cmake_src_configure
-}
-
-src_compile() {
-	cmake_src_compile
-	pushd src/python_scripts
-		distutils-r1_src_compile
-	popd
-}
-
-src_install() {
-	cmake_src_install
-	pushd src/python_scripts
-		distutils-r1_src_install
-	popd
-	cd "${D}"
-	rm usr/bin/mpeg_encode
-	doenvd "${FILESDIR}/97afni"
-}
-
-pkg_postinst() {
-	echo
-	einfo "Please run the following commands if you"
-	einfo "intend to use afni binaries from an existing shell:"
-	einfo "source /etc/profile"
-	echo
-}


^ permalink raw reply related	[flat|nested] 14+ messages in thread

end of thread, other threads:[~2024-05-30 21:55 UTC | newest]

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