[gentoo-commits] repo/gentoo:master commit in: dev-python/scipy/

["Michał Górny" <mgorny@gentoo.org>]

commit:     6d71c30273359ddb890fb2eed49d615e5bc44b6c
Author:     Michał Górny <mgorny <AT> gentoo <DOT> org>
AuthorDate: Mon Oct 19 06:51:04 2020 +0000
Commit:     Michał Górny <mgorny <AT> gentoo <DOT> org>
CommitDate: Mon Oct 19 08:13:54 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6d71c302

dev-python/scipy: Bump to 1.5.3

Signed-off-by: Michał Górny <mgorny <AT> gentoo.org>

 dev-python/scipy/Manifest           |   3 +
 dev-python/scipy/scipy-1.5.3.ebuild | 160 ++++++++++++++++++++++++++++++++++++
 2 files changed, 163 insertions(+)

diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest
index 7677a3c2048..ecea6fa05fb 100644
--- a/dev-python/scipy/Manifest
+++ b/dev-python/scipy/Manifest
@@ -7,3 +7,6 @@ DIST scipy-1.4.1.tar.gz 24555206 BLAKE2B e35f6234404839cbd24d463c8cc2f1ea66aed91
 DIST scipy-1.5.2-html.zip 23166876 BLAKE2B a90d6a2eb25c56147c0c1cccb58cddd230c20cd70dcc5c39b7307acaeac5320ff1c6ed46e3027ec40f604db503a90620cf87212e45f3158c667ec20d95bac649 SHA512 35c675821675844b163eacdaf448173edb78adb5e9f3e438a70809b8b59425a987fd3ed7d6f7863612111ece4a6a36504279ef4492166f5e24a9b2c7ea9d21e7
 DIST scipy-1.5.2-ref.pdf 33462200 BLAKE2B 5784612eb41221a02520778d72341702a7dd4ee8c0147592e170054107219b03af4ccebe1f5e2a57f90f3b892455f95ec45d8eac8e4a7155e21e9ae0526b302f SHA512 15961b7280eb903d2db7a05915b94b3c298cabf68a6694da217680e23fe621885dd169dc88a033ee001a89bc6e6b13ef787ec61009f6ffe38aeaa2dfb84f8a47
 DIST scipy-1.5.2.tar.gz 25423944 BLAKE2B 0a4987da0cde4f33bbb0e2be571b59e9064b1c6554c61c1655100abdecfde54d64845cd30c5b3fcac3ae7426572757aa9a66065dd3b48e6e4cdd4d0ea847868e SHA512 45463df30a0f6270d9f4cf52235f31607904a6ae1375e12600e7f1ab2d27b1dc25a6211b49dceb71506be22c756890adaf9f81d9e6be7455def86c9caf0dc923
+DIST scipy-1.5.3-html.zip 23172844 BLAKE2B eb90cb6d54ff1a6afeff387baccc273df4491a5d37202afa2a8dcebc29ecacf11784e2427fd9b91db954d13c418dae26619d172487515747f49ef6e41f793310 SHA512 cd7131efeccef2095955a3f6d5260d6f3d6d038668d686e556acf87f7aa4d85df576474b4feb7939c3eba51e81dc264590813483427db22038a09164f44f75b0
+DIST scipy-1.5.3-ref.pdf 33463958 BLAKE2B 58939157eb5473278e1cde11a992082824e23220a83c6b3b87f219a12d7449a2290ce845e62d04fdbffb58ab9f6598da153b9ab75a139a071944e73738f19a1f SHA512 66dcb4e507f3f29ad82cc989e93dabe55e7c8147795ed8ed419c15ab50b0d6612e63dd918cab0640ab2085c68b1d14a3981d6da089baa4b4c2d302846aa4c496
+DIST scipy-1.5.3.tar.gz 25234560 BLAKE2B 734f29b7e3f6591b265ec43e173d1303683e2fcfa493cc03d71222fb34ccbc1bb6498d0a9c814d7cb3b08f8d82f06829a2280e46bab733f1c4d6c57742555d70 SHA512 ac65196179663905cf813e023cbbc4c0ef42948425d8190db9218339e23dc3a53e788759f0d7bb986395f8b86f6e97f5de87704ef70445d9f9c10c4ceee8e104

diff --git a/dev-python/scipy/scipy-1.5.3.ebuild b/dev-python/scipy/scipy-1.5.3.ebuild
new file mode 100644
index 00000000000..a3d305b0846
--- /dev/null
+++ b/dev-python/scipy/scipy-1.5.3.ebuild
@@ -0,0 +1,160 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python3_{6..9} )
+PYTHON_REQ_USE="threads(+)"
+
+DOC_PV=${PV}
+
+inherit fortran-2 distutils-r1 flag-o-matic multiprocessing toolchain-funcs
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="https://www.scipy.org/"
+SRC_URI="
+	mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
+	doc? (
+		https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${PV}.zip -> ${PN}-${DOC_PV}-html.zip
+		https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${PV}.pdf -> ${PN}-${DOC_PV}-ref.pdf
+	)"
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~arm ~arm64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
+IUSE="doc sparse test"
+RESTRICT="!test? ( test )"
+
+CDEPEND="
+	>=dev-python/numpy-1.10[lapack,${PYTHON_USEDEP}]
+	sci-libs/arpack:0=
+	virtual/cblas
+	virtual/lapack
+	sparse? ( sci-libs/umfpack:0= )"
+DEPEND="${CDEPEND}
+	dev-lang/swig
+	>=dev-python/cython-0.29.13[${PYTHON_USEDEP}]
+	>=dev-python/setuptools-36[${PYTHON_USEDEP}]
+	dev-python/pybind11[${PYTHON_USEDEP}]
+	virtual/pkgconfig
+	doc? ( app-arch/unzip )
+	test? (
+		dev-python/nose[${PYTHON_USEDEP}]
+		dev-python/pytest[${PYTHON_USEDEP}]
+	)"
+RDEPEND="${CDEPEND}
+	dev-python/pillow[${PYTHON_USEDEP}]"
+
+DOCS=( HACKING.rst.txt THANKS.txt )
+
+DISTUTILS_IN_SOURCE_BUILD=1
+
+src_unpack() {
+	default
+	if use doc; then
+		unzip -qo "${DISTDIR}"/${PN}-${DOC_PV}-html.zip -d html || die
+	fi
+}
+
+pc_incdir() {
+	$(tc-getPKG_CONFIG) --cflags-only-I $@ | \
+		sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libdir() {
+	$(tc-getPKG_CONFIG) --libs-only-L $@ | \
+		sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libs() {
+	$(tc-getPKG_CONFIG) --libs-only-l $@ | \
+		sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
+		-e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
+		| tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
+}
+
+python_prepare_all() {
+	# scipy automatically detects libraries by default
+	export {FFTW,FFTW3,UMFPACK}=None
+	use sparse && unset UMFPACK
+	# the missing symbols are in -lpythonX.Y, but since the version can
+	# differ, we just introduce the same scaryness as on Linux/ELF
+	[[ ${CHOST} == *-darwin* ]] \
+		&& append-ldflags -bundle "-undefined dynamic_lookup" \
+		|| append-ldflags -shared
+	[[ -z ${FC}  ]] && export FC="$(tc-getFC)"
+	# hack to force F77 to be FC until bug #278772 is fixed
+	[[ -z ${F77} ]] && export F77="$(tc-getFC)"
+	export F90="${FC}"
+	export SCIPY_FCONFIG="config_fc --noopt --noarch"
+	append-fflags -fPIC
+
+	local libdir="${EPREFIX}"/usr/$(get_libdir)
+	cat >> site.cfg <<-EOF || die
+		[blas]
+		include_dirs = $(pc_incdir cblas)
+		library_dirs = $(pc_libdir cblas blas):${libdir}
+		blas_libs = $(pc_libs cblas blas)
+		[lapack]
+		library_dirs = $(pc_libdir lapack):${libdir}
+		lapack_libs = $(pc_libs lapack)
+	EOF
+	cat >> setup.cfg <<-EOF || die
+		[options]
+		zip_safe = False
+	EOF
+
+	# Drop hashes to force rebuild of cython based .c code
+	rm cythonize.dat || die
+
+	# TODO
+	sed -e 's:test_magic_square_sparse_no_presolve:_&:' \
+		-i scipy/optimize/tests/test_linprog.py || die
+	sed -e "s:== 'levy_stable':in ('levy_stable', 'crystalball', 'ncf'):" \
+		-i scipy/stats/tests/test_continuous_basic.py || die
+
+	distutils-r1_python_prepare_all
+}
+
+python_configure_all() {
+	# bug 721860
+	test-flag-FC -fallow-argument-mismatch &&
+		append-fflags -fallow-argument-mismatch
+}
+
+python_compile() {
+	# FIXME: parallel python building fails, bug #614464
+	export MAKEOPTS=-j1
+
+	${EPYTHON} tools/cythonize.py || die
+	distutils-r1_python_compile \
+		${SCIPY_FCONFIG}
+}
+
+python_test() {
+	# fails with bdist_egg. should it be fixed in distutils-r1 eclass?
+	distutils_install_for_testing ${SCIPY_FCONFIG}
+	cd "${TEST_DIR}/lib" || die "no ${TEST_DIR} available"
+	PYTHONPATH=. "${EPYTHON}" -c "
+import scipy, sys
+r = scipy.test('fast', verbose=2)
+sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}"
+}
+
+python_install_all() {
+	use doc && \
+		local DOCS=( "${DISTDIR}"/${PN}-${DOC_PV}-ref.pdf ) \
+		local HTML_DOCS=( "${WORKDIR}"/html/. )
+	distutils-r1_python_install_all
+}
+
+python_install() {
+	distutils-r1_python_install ${SCIPY_FCONFIG}
+	python_optimize
+}
+
+pkg_postinst() {
+	elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
+	elog "to your prefered image viewer. Example:"
+	elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
+}