* [gentoo-commits] proj/sci:master commit in: sci-biology/scbi_blast/
@ 2015-12-02 22:21 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2015-12-02 22:21 UTC (permalink / raw
To: gentoo-commits
commit: 3d88d332ced5fa9e2944032b4bc24f1636e8e98e
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Dec 2 22:21:06 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Dec 2 22:21:06 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3d88d332
sci-biology/scbi_blast: new package
Package-Manager: portage-2.2.26
sci-biology/scbi_blast/ChangeLog | 9 +++++++++
sci-biology/scbi_blast/metadata.xml | 12 ++++++++++++
sci-biology/scbi_blast/scbi_blast-0.0.37.ebuild | 24 ++++++++++++++++++++++++
3 files changed, 45 insertions(+)
diff --git a/sci-biology/scbi_blast/ChangeLog b/sci-biology/scbi_blast/ChangeLog
new file mode 100644
index 0000000..e17f652
--- /dev/null
+++ b/sci-biology/scbi_blast/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/scbi_blast
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Id$
+
+*scbi_blast-0.0.37 (02 Dec 2015)
+
+ 02 Dec 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+ +scbi_blast-0.0.37.ebuild:
+ sci-biology/scbi_blast: new package
diff --git a/sci-biology/scbi_blast/metadata.xml b/sci-biology/scbi_blast/metadata.xml
new file mode 100644
index 0000000..5fa67e9
--- /dev/null
+++ b/sci-biology/scbi_blast/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <upstream>
+ <remote-id type="github">trinityrnaseq/trinityrnaseq</remote-id>
+ </upstream>
+</pkgmetadata>
diff --git a/sci-biology/scbi_blast/scbi_blast-0.0.37.ebuild b/sci-biology/scbi_blast/scbi_blast-0.0.37.ebuild
new file mode 100644
index 0000000..ece09e1
--- /dev/null
+++ b/sci-biology/scbi_blast/scbi_blast-0.0.37.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+USE_RUBY="ruby19 ruby20 ruby21"
+
+RUBY_FAKEGEM_TASK_DOC=""
+RUBY_FAKEGEM_EXTRADOC="README.rdoc History.txt"
+
+inherit ruby-fakegem
+
+DESCRIPTION="Handle blast+ executions using pipes instead of files"
+HOMEPAGE="https://rubygems.org/gems/scbi_blast"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=">=dev-ruby/hoe-2.8.0
+ >=dev-ruby/rdoc-4.0"
+RDEPEND="${DEPEND}
+ >=dev-ruby/xml-simple-1.0.12"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/scbi_blast/
@ 2015-12-25 21:00 Marius Brehler
0 siblings, 0 replies; 6+ messages in thread
From: Marius Brehler @ 2015-12-25 21:00 UTC (permalink / raw
To: gentoo-commits
commit: 37061f16aa16b34a10ea6ae46073beb18f0d4039
Author: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
AuthorDate: Fri Dec 25 20:55:21 2015 +0000
Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Fri Dec 25 20:55:21 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=37061f16
sci-biology/scbi_blast: Fix header, remove ruby19
Package-Manager: portage-2.2.24
sci-biology/scbi_blast/ChangeLog | 4 ++++
sci-biology/scbi_blast/scbi_blast-0.0.37.ebuild | 4 ++--
2 files changed, 6 insertions(+), 2 deletions(-)
diff --git a/sci-biology/scbi_blast/ChangeLog b/sci-biology/scbi_blast/ChangeLog
index e17f652..f171b82 100644
--- a/sci-biology/scbi_blast/ChangeLog
+++ b/sci-biology/scbi_blast/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 25 Dec 2015; Marius Brehler <marbre@linux.sungazer.de>
+ scbi_blast-0.0.37.ebuild:
+ sci-biology/scbi_blast: Fix header, remove ruby19
+
*scbi_blast-0.0.37 (02 Dec 2015)
02 Dec 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
diff --git a/sci-biology/scbi_blast/scbi_blast-0.0.37.ebuild b/sci-biology/scbi_blast/scbi_blast-0.0.37.ebuild
index ece09e1..d85c360 100644
--- a/sci-biology/scbi_blast/scbi_blast-0.0.37.ebuild
+++ b/sci-biology/scbi_blast/scbi_blast-0.0.37.ebuild
@@ -1,9 +1,9 @@
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: $
+# $Id$
EAPI=5
-USE_RUBY="ruby19 ruby20 ruby21"
+USE_RUBY="ruby20 ruby21"
RUBY_FAKEGEM_TASK_DOC=""
RUBY_FAKEGEM_EXTRADOC="README.rdoc History.txt"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/scbi_blast/
@ 2016-04-27 18:10 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2016-04-27 18:10 UTC (permalink / raw
To: gentoo-commits
commit: ae0302503aeb123dadb5b355239df663e7c3d61a
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Apr 27 18:08:28 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Apr 27 18:08:28 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ae030250
sci-biology/scbi_blast: new ruby package
Package-Manager: portage-2.2.28
.../{scbi_blast-0.0.37.ebuild => scbi_blast-0.0.43.ebuild} | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/sci-biology/scbi_blast/scbi_blast-0.0.37.ebuild b/sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild
similarity index 80%
rename from sci-biology/scbi_blast/scbi_blast-0.0.37.ebuild
rename to sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild
index d85c360..f96d884 100644
--- a/sci-biology/scbi_blast/scbi_blast-0.0.37.ebuild
+++ b/sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -6,7 +6,7 @@ EAPI=5
USE_RUBY="ruby20 ruby21"
RUBY_FAKEGEM_TASK_DOC=""
-RUBY_FAKEGEM_EXTRADOC="README.rdoc History.txt"
+RUBY_FAKEGEM_EXTRADOC="README.rdoc"
inherit ruby-fakegem
@@ -20,5 +20,6 @@ IUSE=""
DEPEND=">=dev-ruby/hoe-2.8.0
>=dev-ruby/rdoc-4.0"
+ #>=dev-ruby/newgem-1.5.3"
RDEPEND="${DEPEND}
>=dev-ruby/xml-simple-1.0.12"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/scbi_blast/
@ 2017-03-26 14:45 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2017-03-26 14:45 UTC (permalink / raw
To: gentoo-commits
commit: afee3df4bbef2ff17589a59a23dad4fe16cb67d9
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 26 08:58:09 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Mar 26 08:58:09 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=afee3df4
sci-biology/scbi_blast: Drop obsolete ruby version
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild | 10 ++++++----
1 file changed, 6 insertions(+), 4 deletions(-)
diff --git a/sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild b/sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild
index 167be284b..c8f9be449 100644
--- a/sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild
+++ b/sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild
@@ -1,8 +1,9 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
-USE_RUBY="ruby20 ruby21"
+EAPI=6
+
+USE_RUBY="ruby21"
RUBY_FAKEGEM_TASK_DOC=""
RUBY_FAKEGEM_EXTRADOC="README.rdoc"
@@ -17,7 +18,8 @@ SLOT="0"
KEYWORDS="~amd64"
IUSE=""
-DEPEND=">=dev-ruby/hoe-2.8.0
+DEPEND="
+ >=dev-ruby/hoe-2.8.0
>=dev-ruby/rdoc-4.0"
#>=dev-ruby/newgem-1.5.3"
RDEPEND="${DEPEND}
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/scbi_blast/
@ 2017-09-02 11:55 David Seifert
0 siblings, 0 replies; 6+ messages in thread
From: David Seifert @ 2017-09-02 11:55 UTC (permalink / raw
To: gentoo-commits
commit: 156f058ae941af14b1f0065ef0df8fe7362fc6aa
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Sep 2 11:55:28 2017 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Sep 2 11:55:28 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=156f058a
sci-biology/scbi_blast: Update USE_RUBY to fix breakages
Package-Manager: Portage-2.3.8, Repoman-2.3.3
sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild b/sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild
index c8f9be449..f5e447265 100644
--- a/sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild
+++ b/sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild
@@ -3,7 +3,7 @@
EAPI=6
-USE_RUBY="ruby21"
+USE_RUBY="ruby22 ruby23 ruby24"
RUBY_FAKEGEM_TASK_DOC=""
RUBY_FAKEGEM_EXTRADOC="README.rdoc"
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/scbi_blast/
@ 2020-09-27 22:18 Horea Christian
0 siblings, 0 replies; 6+ messages in thread
From: Horea Christian @ 2020-09-27 22:18 UTC (permalink / raw
To: gentoo-commits
commit: 7bc90e716a44033167ab0396494404548a8c46af
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Sep 27 22:16:26 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Sep 27 22:16:26 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7bc90e71
sci-biology/scbi_blast: removed discontinued package
Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/scbi_blast/metadata.xml | 15 --------------
sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild | 26 -------------------------
2 files changed, 41 deletions(-)
diff --git a/sci-biology/scbi_blast/metadata.xml b/sci-biology/scbi_blast/metadata.xml
deleted file mode 100644
index 4e1fea2dd..000000000
--- a/sci-biology/scbi_blast/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="rubygems">scbi_blast</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild b/sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild
deleted file mode 100644
index f5e447265..000000000
--- a/sci-biology/scbi_blast/scbi_blast-0.0.43.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-USE_RUBY="ruby22 ruby23 ruby24"
-
-RUBY_FAKEGEM_TASK_DOC=""
-RUBY_FAKEGEM_EXTRADOC="README.rdoc"
-
-inherit ruby-fakegem
-
-DESCRIPTION="Handle blast+ executions using pipes instead of files"
-HOMEPAGE="https://rubygems.org/gems/scbi_blast"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND="
- >=dev-ruby/hoe-2.8.0
- >=dev-ruby/rdoc-4.0"
- #>=dev-ruby/newgem-1.5.3"
-RDEPEND="${DEPEND}
- >=dev-ruby/xml-simple-1.0.12"
^ permalink raw reply related [flat|nested] 6+ messages in thread
end of thread, other threads:[~2020-09-27 22:18 UTC | newest]
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