* [gentoo-commits] proj/sci:master commit in: sci-biology/pb-jelly/
@ 2015-01-07 22:05 Martin Mokrejs
0 siblings, 0 replies; 3+ messages in thread
From: Martin Mokrejs @ 2015-01-07 22:05 UTC (permalink / raw
To: gentoo-commits
commit: 7f8ffd5d9ba726d2502d2e5d0f4046d6333477ac
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jan 7 22:04:41 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jan 7 22:04:41 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7f8ffd5d
Initial ebuild
---
sci-biology/pb-jelly/ChangeLog | 10 ++++++++++
sci-biology/pb-jelly/metadata.xml | 9 +++++++++
sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild | 22 ++++++++++++++++++++++
3 files changed, 41 insertions(+)
diff --git a/sci-biology/pb-jelly/ChangeLog b/sci-biology/pb-jelly/ChangeLog
new file mode 100644
index 0000000..7e85562
--- /dev/null
+++ b/sci-biology/pb-jelly/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/pb-jelly
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*pb-jelly-14.9.9 (07 Jan 2015)
+
+ 07 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +pb-jelly-14.9.9.ebuild, +metadata.xml:
+ initial ebuild
+
diff --git a/sci-biology/pb-jelly/metadata.xml b/sci-biology/pb-jelly/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/pb-jelly/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild b/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild
new file mode 100644
index 0000000..78ddcfe
--- /dev/null
+++ b/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild
@@ -0,0 +1,22 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Close gaps using PacBio RS or 454 FLX+ reads"
+HOMEPAGE="https://www.hgsc.bcm.edu/software/jelly"
+SRC_URI="http://sourceforge.net/projects/pb-jelly/files/PBSuite_14.9.9.tgz -> pb-jelly-14.9.9.tgz"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="sci-biology/blasr
+ <=dev-python/networkx-1.1" # upstream says "Versions past v1.1 have been shown to have many issues."
+RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/pb-jelly/
@ 2015-01-10 14:37 Justin Lecher
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2015-01-10 14:37 UTC (permalink / raw
To: gentoo-commits
commit: 12f917d1a346fb94b28fa917d3e7111f06339bd7
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sat Jan 10 14:32:58 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jan 10 14:32:58 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=12f917d1
sci-biology/pb-jelly: Fix license; add missing []
Package-Manager: portage-2.2.15
---
sci-biology/pb-jelly/ChangeLog | 3 +++
sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild | 7 ++++---
2 files changed, 7 insertions(+), 3 deletions(-)
diff --git a/sci-biology/pb-jelly/ChangeLog b/sci-biology/pb-jelly/ChangeLog
index 7e85562..9ab6dfe 100644
--- a/sci-biology/pb-jelly/ChangeLog
+++ b/sci-biology/pb-jelly/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 10 Jan 2015; Justin Lecher <jlec@gentoo.org> pb-jelly-14.9.9.ebuild:
+ Fix license; add missing []
+
*pb-jelly-14.9.9 (07 Jan 2015)
07 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
diff --git a/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild b/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild
index 78ddcfe..3aaaf54 100644
--- a/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild
+++ b/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild
@@ -12,11 +12,12 @@ DESCRIPTION="Close gaps using PacBio RS or 454 FLX+ reads"
HOMEPAGE="https://www.hgsc.bcm.edu/software/jelly"
SRC_URI="http://sourceforge.net/projects/pb-jelly/files/PBSuite_14.9.9.tgz -> pb-jelly-14.9.9.tgz"
-LICENSE=""
+LICENSE="BSD-2"
SLOT="0"
KEYWORDS=""
IUSE=""
-DEPEND="sci-biology/blasr
- <=dev-python/networkx-1.1" # upstream says "Versions past v1.1 have been shown to have many issues."
+DEPEND="
+ sci-biology/blasr
+ <=dev-python/networkx-1.1[${PYTHON_USEDEP}]" # upstream says "Versions past v1.1 have been shown to have many issues."
RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/pb-jelly/
@ 2020-09-27 20:59 Horea Christian
0 siblings, 0 replies; 3+ messages in thread
From: Horea Christian @ 2020-09-27 20:59 UTC (permalink / raw
To: gentoo-commits
commit: cf414470c9a2bbb7ea5323bb516b6adbeea0012e
Author: Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Sun Sep 27 20:59:12 2020 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Sun Sep 27 20:59:12 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cf414470
sci-biology/pb-jelly: removed discontinued package
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr <AT> chymera.eu>
sci-biology/pb-jelly/metadata.xml | 15 ---------------
sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild | 22 ----------------------
2 files changed, 37 deletions(-)
diff --git a/sci-biology/pb-jelly/metadata.xml b/sci-biology/pb-jelly/metadata.xml
deleted file mode 100644
index 1b533d8a5..000000000
--- a/sci-biology/pb-jelly/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">pb-jelly</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild b/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild
deleted file mode 100644
index 32c52e9d0..000000000
--- a/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild
+++ /dev/null
@@ -1,22 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1
-
-DESCRIPTION="Close gaps using PacBio RS or 454 FLX+ reads"
-HOMEPAGE="https://www.hgsc.bcm.edu/software/jelly"
-SRC_URI="http://sourceforge.net/projects/pb-jelly/files/PBSuite_14.9.9.tgz -> pb-jelly-14.9.9.tgz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="
- sci-biology/blasr
- <=dev-python/networkx-1.1[${PYTHON_USEDEP}]" # upstream says "Versions past v1.1 have been shown to have many issues."
-RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 3+ messages in thread
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