[gentoo-commits] repo/gentoo:master commit in: sci-biology/bedtools/

["David Seifert" <soap@gentoo.org>]

commit:     e242a698ff6c378fa19286f02c735606e6a66fd6
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Aug 16 20:49:52 2020 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Aug 16 20:49:52 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e242a698

sci-biology/bedtools: Remove old

Closes: https://bugs.gentoo.org/718468
Package-Manager: Portage-3.0.2, Repoman-2.3.23
Signed-off-by: David Seifert <soap <AT> gentoo.org>

 sci-biology/bedtools/Manifest               |  2 --
 sci-biology/bedtools/bedtools-2.26.0.ebuild | 44 -----------------------------
 2 files changed, 46 deletions(-)

diff --git a/sci-biology/bedtools/Manifest b/sci-biology/bedtools/Manifest
index d776ef0925a..5dc912159a4 100644
--- a/sci-biology/bedtools/Manifest
+++ b/sci-biology/bedtools/Manifest
@@ -1,3 +1 @@
-DIST bedtools-2.26.0-fix-buildsystem.patch.bz2 2584 BLAKE2B 550cd03a0c01217adb347587cb75bdc2ffa4e03ad6ad66535b22d423e6f030e237b0ccfd3d1bd3e434cb9cc2a007971517f03e9ceabc08b63c725bac786e23e8 SHA512 0a7835f560102ce6183736faea6a2be05609b69bb8efdaf98b9d7057e24aa1ebe9d6067118b95c76470ca341b151970db532094ee70ca333075aed7c47509ba3
-DIST bedtools-2.26.0.tar.gz 19939711 BLAKE2B 8f6ee6ed755c638dbdd0a4750a5348c28a865f36eaafef6160e90f62912cb0a6b719713935ba68dad74bc591e3f37db49eab54a06a316dc00e4ec82a5dca71dc SHA512 b224adcc09322e90ef389e8172e14572b68f164185fe1a8814db1c47bb4f15656ca8c0ff0061017eb54d76affbe0d0f5793d893b8ab489b56eaf0818616a5def
 DIST bedtools-2.29.2.tar.gz 20646485 BLAKE2B cdfff7a0f5300f31c2487e98bd28dc7e8b7f3575a098947c2c7b3a6e30272a80d35f07997d3a00bd42d91bf60899f32358b25b054b6f40b761cc66e2788508b3 SHA512 138ff029995e9889d2e43f884fa15bb5614d11cf75dfe18e2999aad0915e80f49444e67c9934c92ca8e28caad399394b493db8a1bee9f5304413a8c41c22c6d5

diff --git a/sci-biology/bedtools/bedtools-2.26.0.ebuild b/sci-biology/bedtools/bedtools-2.26.0.ebuild
deleted file mode 100644
index b062a6fef84..00000000000
--- a/sci-biology/bedtools/bedtools-2.26.0.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python3_6 )
-
-inherit flag-o-matic python-any-r1 toolchain-funcs
-
-DESCRIPTION="Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats"
-HOMEPAGE="https://bedtools.readthedocs.io/"
-SRC_URI="https://github.com/arq5x/${PN}2/releases/download/v${PV}/${P}.tar.gz
-	https://dev.gentoo.org/~mgorny/dist/${PN}-2.26.0-fix-buildsystem.patch.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="${PYTHON_DEPS}
-	test? (
-		sci-libs/htslib
-		sci-biology/samtools:0
-	)"
-RDEPEND="sys-libs/zlib"
-
-S="${WORKDIR}/${PN}2"
-
-DOCS=( README.md RELEASE_HISTORY )
-PATCHES=( "${WORKDIR}/${PN}-2.26.0-fix-buildsystem.patch" )
-
-src_configure() {
-	append-lfs-flags
-	export prefix="${EPREFIX}/usr"
-	tc-export AR CXX
-}
-
-src_install() {
-	default
-
-	insinto /usr/share/${PN}
-	doins -r genomes
-}