[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/chemex/files/, sci-chemistry/chemex/

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/chemex/files/, sci-chemistry/chemex/

[Pacho Ramos]

commit:     33a4e2d54a55c79cf47ab4554daf9baf7cc40660
Author:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
AuthorDate: Sun Jun  7 10:40:38 2020 +0000
Commit:     Pacho Ramos <pacho <AT> gentoo <DOT> org>
CommitDate: Sun Jun  7 10:45:25 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=33a4e2d5

sci-chemistry/chemex: Bump to 2018.10.2

Closes: https://bugs.gentoo.org/705648
Package-Manager: Portage-2.3.100, Repoman-2.3.22
Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org>

 sci-chemistry/chemex/Manifest                      |  1 +
 sci-chemistry/chemex/chemex-2018.10.2.ebuild       | 47 ++++++++++++++++++++++
 .../files/chemex-2018.10.2-tests-package.patch     | 11 +++++
 3 files changed, 59 insertions(+)

diff --git a/sci-chemistry/chemex/Manifest b/sci-chemistry/chemex/Manifest
index 7a581bc1bd4..21f984a5160 100644
--- a/sci-chemistry/chemex/Manifest
+++ b/sci-chemistry/chemex/Manifest
@@ -1 +1,2 @@
 DIST chemex-0.6.1.tar.gz 1449216 BLAKE2B 6b7f7597b09cd43b9bec89b6359d1f650fdd7d4f3a373e706da80dafaf438417458f34af6bc378442b5b4a84cb8222103ebc8026c85583e8dece3fad0dc77204 SHA512 40f538ef9c162759c7a6863886da8d46746ac362fc19154f0a5f3dd8703f7fea7397c3f34092c86dbce486c452e0d3b09a76e4c11ae119834d7ca4912e7f3fdf
+DIST chemex-2018.10.2.tar.gz 546575 BLAKE2B c36ae3bc152459844633276ab286b6f750ed5b2538c4289ceb75de9a081ad74fe346a79357fd6fc2f8972722b3520473262c4d623e46d6a4b30395962164a51f SHA512 f8ed017c0881ea9188e150456827e2c6302bdfe546c8058bd0261e43d941fbd1ac9e6abf1621d82107a4f6bd4e9aa4bc70c46e42dc98eabf2dba45a4fa78f77e

diff --git a/sci-chemistry/chemex/chemex-2018.10.2.ebuild b/sci-chemistry/chemex/chemex-2018.10.2.ebuild
new file mode 100644
index 00000000000..99f888adb02
--- /dev/null
+++ b/sci-chemistry/chemex/chemex-2018.10.2.ebuild
@@ -0,0 +1,47 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+DISTUTILS_SINGLE_IMPL="yes"
+DISTUTILS_USE_SETUPTOOLS=rdepend
+PYTHON_COMPAT=( python3_{6..8} )
+
+inherit distutils-r1
+
+DESCRIPTION="Program to fit chemical exchange induced shift and relaxation data"
+HOMEPAGE="https://github.com/gbouvignies/chemex"
+SRC_URI="https://github.com/gbouvignies/chemex/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+RDEPEND="
+	$(python_gen_cond_dep '
+		>=dev-python/asteval-0.9.11[${PYTHON_MULTI_USEDEP}]
+		>=dev-python/lmfit-0.9.11[${PYTHON_MULTI_USEDEP}]
+		>=dev-python/matplotlib-1.1[${PYTHON_MULTI_USEDEP}]
+		dev-python/numpy[${PYTHON_MULTI_USEDEP}]
+		dev-python/setuptools_scm[${PYTHON_MULTI_USEDEP}]
+		>=sci-libs/scipy-0.11[${PYTHON_MULTI_USEDEP}]
+	')
+"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}/ChemEx-${PV}"
+
+PATCHES=(
+	# https://github.com/gbouvignies/ChemEx/issues/44
+	"${FILESDIR}"/${P}-tests-package.patch
+)
+
+src_prepare() {
+	export SETUPTOOLS_SCM_PRETEND_VERSION="${PV}"
+	distutils-r1_src_prepare
+}
+
+python_test() {
+	py.test -v -v || die
+}

diff --git a/sci-chemistry/chemex/files/chemex-2018.10.2-tests-package.patch b/sci-chemistry/chemex/files/chemex-2018.10.2-tests-package.patch
new file mode 100644
index 00000000000..d743c969a92
--- /dev/null
+++ b/sci-chemistry/chemex/files/chemex-2018.10.2-tests-package.patch
@@ -0,0 +1,11 @@
+--- a/setup.py~	2019-03-12 21:45:04.000000000 +0100
++++ b/setup.py	2020-06-07 11:36:28.052241913 +0200
+@@ -21,7 +21,7 @@
+         "Programming Language :: Python :: 3.7",
+     ],
+     keywords="nmr protein dynamics chemical exchange cpmg cest relaxation data fitting",
+-    packages=find_packages(),
++    packages=find_packages(exclude=['tests']),
+     install_requires=[
+         "numpy>=1.0",
+         "scipy>=1.0",