[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/mustang/

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/mustang/

[Agostino Sarubbo]

commit:     03b2543bd7e0ae7e66442b9013fbb1cd3113d9a4
Author:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Thu May 21 07:52:18 2020 +0000
Commit:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Thu May 21 07:52:18 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=03b2543b

sci-chemistry/mustang: amd64 stable wrt bug #724158

Package-Manager: Portage-2.3.99, Repoman-2.3.22
RepoMan-Options: --include-arches="amd64"
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>

 sci-chemistry/mustang/mustang-3.2.2.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/mustang/mustang-3.2.2.ebuild b/sci-chemistry/mustang/mustang-3.2.2.ebuild
index 9bbd00dc51c..d765aa2ad3b 100644
--- a/sci-chemistry/mustang/mustang-3.2.2.ebuild
+++ b/sci-chemistry/mustang/mustang-3.2.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -15,7 +15,7 @@ SRC_URI="http://www.csse.monash.edu.au/~karun/${PN}/${PN}_v${PV}.tgz"
 
 LICENSE="BSD"
 SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE=""
 
 S="${WORKDIR}/${MY_P}"

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/mustang/

[Agostino Sarubbo]

commit:     aac015199177896776f1df9604f4d369a401ddac
Author:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
AuthorDate: Thu May 21 08:05:43 2020 +0000
Commit:     Agostino Sarubbo <ago <AT> gentoo <DOT> org>
CommitDate: Thu May 21 08:05:43 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=aac01519

sci-chemistry/mustang: x86 stable wrt bug #724158

Package-Manager: Portage-2.3.99, Repoman-2.3.22
RepoMan-Options: --include-arches="x86"
Signed-off-by: Agostino Sarubbo <ago <AT> gentoo.org>

 sci-chemistry/mustang/mustang-3.2.2.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/mustang/mustang-3.2.2.ebuild b/sci-chemistry/mustang/mustang-3.2.2.ebuild
index d765aa2ad3b..82f1f1deade 100644
--- a/sci-chemistry/mustang/mustang-3.2.2.ebuild
+++ b/sci-chemistry/mustang/mustang-3.2.2.ebuild
@@ -15,7 +15,7 @@ SRC_URI="http://www.csse.monash.edu.au/~karun/${PN}/${PN}_v${PV}.tgz"
 
 LICENSE="BSD"
 SLOT="0"
-KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
 IUSE=""
 
 S="${WORKDIR}/${MY_P}"

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/mustang/

[Andreas Sturmlechner]

commit:     32291a189d949496247c3cc73bca19b59ef69c0f
Author:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
AuthorDate: Thu May 21 08:10:18 2020 +0000
Commit:     Andreas Sturmlechner <asturm <AT> gentoo <DOT> org>
CommitDate: Thu May 21 08:13:15 2020 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=32291a18

sci-chemistry/mustang: Drop 3.2.1

Package-Manager: Portage-2.3.99, Repoman-2.3.22
Signed-off-by: Andreas Sturmlechner <asturm <AT> gentoo.org>

 sci-chemistry/mustang/Manifest             |  1 -
 sci-chemistry/mustang/mustang-3.2.1.ebuild | 48 ------------------------------
 2 files changed, 49 deletions(-)

diff --git a/sci-chemistry/mustang/Manifest b/sci-chemistry/mustang/Manifest
index 1bb10e0d7b7..e053c2f20e0 100644
--- a/sci-chemistry/mustang/Manifest
+++ b/sci-chemistry/mustang/Manifest
@@ -1,2 +1 @@
-DIST mustang_v3.2.1.tgz 161216 BLAKE2B 8e96ecc7a77eeb9729f4c7f050f8c088e7b57c8d6c9bf436efc173449157db40fe0ef826249fc006edd5b3d87fa8a7b49708f14e8768aba1f6e7ac243f3e0bbf SHA512 aee37bb77edbdc601cdc735db8602d0a3804065200df1b36b6956e74dfd5f85b554a655be1bfbe673aada1abd5e1aee1c0f59fb2ff0380bfcb725e38439d41ff
 DIST mustang_v3.2.2.tgz 141940 BLAKE2B b90b42df782bd1dbdb387d0d0ab42430c5212b439da84f56a33ca2c746c8937ae330dfb8d634e7d1c5ffd0f6959cd9e4be0efe8f569c452930a3481894c68ec5 SHA512 cb862f860f3cdb3349743c6005a29acc14cde5269df9d61f1100ffdc9a22c1d8e3dd46771371557b823724e79783f8fcb7356c63c6f0c0a09aac09bee407a26d

diff --git a/sci-chemistry/mustang/mustang-3.2.1.ebuild b/sci-chemistry/mustang/mustang-3.2.1.ebuild
deleted file mode 100644
index 47e67a964a4..00000000000
--- a/sci-chemistry/mustang/mustang-3.2.1.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit eutils toolchain-funcs
-
-MY_PN="MUSTANG"
-SRC_P="${PN}_v${PV}"
-MY_P="${MY_PN}_v${PV}"
-
-DESCRIPTION="MUltiple STructural AligNment AlGorithm"
-HOMEPAGE="http://www.csse.monash.edu.au/~karun/Site/mustang.html"
-SRC_URI="http://www.csse.unimelb.edu.au/~arun/${PN}/${SRC_P}.tgz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-	epatch "${FILESDIR}"/${P}-gcc-4.7.patch
-}
-
-src_compile() {
-	emake \
-		CPP=$(tc-getCXX) \
-		CPPFLAGS="${CXXFLAGS}" \
-		LDFLAGS="${LDFLAGS}"
-}
-
-src_test() {
-	./bin/${P} -f ./data/test/test_zf-CCHH || die
-}
-
-src_install() {
-	newbin bin/${P} mustang
-	doman man/${PN}.1
-	dodoc README
-}
-
-pkg_postinst() {
-	elog "If you use this program for an academic paper, please cite:"
-	elog "Arun S. Konagurthu, James C. Whisstock, Peter J. Stuckey, and Arthur M. Lesk"
-	elog "Proteins: Structure, Function, and Bioinformatics. 64(3):559-574, Aug. 2006"
-}

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/mustang/

[Sam James]

commit:     7992e466805b6d59bce2e7f4076dcec0e76f6134
Author:     Sam James <sam <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 20 18:49:54 2022 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Sun Mar 20 18:51:08 2022 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7992e466

sci-chemistry/mustang: [QA] fix tc-get* quoting

This can cause build problems for e.g. 32-bit (gcc -m32 ...)

Signed-off-by: Sam James <sam <AT> gentoo.org>

 sci-chemistry/mustang/mustang-3.2.2.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/mustang/mustang-3.2.2.ebuild b/sci-chemistry/mustang/mustang-3.2.2.ebuild
index d15a60e83945..cd4bec0fad09 100644
--- a/sci-chemistry/mustang/mustang-3.2.2.ebuild
+++ b/sci-chemistry/mustang/mustang-3.2.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -27,7 +27,7 @@ src_prepare() {
 
 src_compile() {
 	emake \
-		CPP=$(tc-getCXX) \
+		CPP="$(tc-getCXX)" \
 		CPPFLAGS="${CXXFLAGS}" \
 		LDFLAGS="${LDFLAGS}"
 }