From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id F0BF613997D for ; Sun, 10 Nov 2019 13:44:15 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 2A498E090A; Sun, 10 Nov 2019 13:44:15 +0000 (UTC) Received: from smtp.gentoo.org (dev.gentoo.org [IPv6:2001:470:ea4a:1:5054:ff:fec7:86e4]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 1238BE090A for ; Sun, 10 Nov 2019 13:44:14 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id A0FE034CB40 for ; Sun, 10 Nov 2019 13:44:13 +0000 (UTC) Received: from localhost.localdomain (localhost [IPv6:::1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id E7BE0892 for ; Sun, 10 Nov 2019 13:44:10 +0000 (UTC) From: "Horea Christian" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Horea Christian" Message-ID: <1573393440.534bbb6fc9dfed4dd42670610750365592138de0.chymera@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/nilearn/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/nilearn/nilearn-0.5.2.ebuild X-VCS-Directories: sci-biology/nilearn/ X-VCS-Committer: chymera X-VCS-Committer-Name: Horea Christian X-VCS-Revision: 534bbb6fc9dfed4dd42670610750365592138de0 X-VCS-Branch: master Date: Sun, 10 Nov 2019 13:44:10 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply X-Archives-Salt: 4b412361-d650-4646-9041-0ed7f978eee3 X-Archives-Hash: ae89dad0d77591a667b8701a7c2643dd commit: 534bbb6fc9dfed4dd42670610750365592138de0 Author: Horea Christian chymera eu> AuthorDate: Sun Nov 10 13:44:00 2019 +0000 Commit: Horea Christian gmail com> CommitDate: Sun Nov 10 13:44:00 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=534bbb6f sci-biology/nilearn: verion bump 0.5.2 Package-Manager: Portage-2.3.78, Repoman-2.3.17 Signed-off-by: Horea Christian chymera.eu> sci-biology/nilearn/nilearn-0.5.2.ebuild | 60 ++++++++++++++++++++++++++++++++ 1 file changed, 60 insertions(+) diff --git a/sci-biology/nilearn/nilearn-0.5.2.ebuild b/sci-biology/nilearn/nilearn-0.5.2.ebuild new file mode 100644 index 000000000..81a34ee9f --- /dev/null +++ b/sci-biology/nilearn/nilearn-0.5.2.ebuild @@ -0,0 +1,60 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) + +inherit distutils-r1 + +DESCRIPTION="Fast and easy statistical learning on NeuroImaging data" +HOMEPAGE="http://nilearn.github.io/" +SRC_URI="https://github.com/nilearn/nilearn/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="+plot test" + +# Tests attempt to download external data. +RESTRICT="test" + +DEPEND=" + test? ( + ${RDEPEND} + dev-python/nose[${PYTHON_USEDEP}] + ) + dev-python/setuptools[${PYTHON_USEDEP}] + " +RDEPEND=" + dev-python/joblib[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + sci-libs/scikits_learn[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + plot? ( dev-python/matplotlib[${PYTHON_USEDEP}] )" + +# (Temporarily) commented out, since Gentoo sci-libs/scikits_learn decided it +# is a mess to maintain system joblib usage +#PATCHES=( "${FILESDIR}/0.4.1-bundled_joblib_test.patch" ) + +python_prepare_all() { + # upstream is reluctant to *not* depend on bundled scikits_learn: + # https://github.com/nilearn/nilearn/pull/1398 + # (Temporarily) commented out, since Gentoo sci-libs/scikits_learn decided it + # is a mess to maintain system joblib usage + #local f + #for f in nilearn/{*/*/,*/,}*.py; do + # sed -r \ + # -e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \ + # -e 's/from (sklearn|\.|)\.externals import/import/' \ + # -i $f || die + #done + + distutils-r1_python_prepare_all +} + +python_test() { + echo "backend: Agg" > matplotlibrc + MPLCONFIGDIR=. nosetests -v || die +}