From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-blast+/
Date: Mon, 25 Mar 2019 12:16:15 +0000 (UTC) [thread overview]
Message-ID: <1553516159.868fbe5eeaa38a05f1ae2775a286b8d2ae651572.mmokrejs@gentoo> (raw)
commit: 868fbe5eeaa38a05f1ae2775a286b8d2ae651572
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Mar 25 12:15:59 2019 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Mar 25 12:15:59 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=868fbe5e
sci-biology/ncbi-blast+: EAPI7 bump, remove unused variable
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>
sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild | 8 ++++----
sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild | 8 ++++----
sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild | 6 +++---
.../{ncbi-blast+-2.6.0.ebuild => ncbi-blast+-2.8.1.ebuild} | 9 +++++----
4 files changed, 16 insertions(+), 15 deletions(-)
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
index dd6f3444f..d6c529b57 100644
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.30.ebuild
@@ -1,13 +1,12 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
PYTHON_COMPAT=( python2_7 )
inherit eutils flag-o-matic multilib python-single-r1 toolchain-funcs
-MY_PV="2.2.30"
MY_P="ncbi-blast-${PV}+-src"
# workdir/ncbi-blast-2.2.30+-src
# ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-src.tar.gz
@@ -134,6 +133,7 @@ src_prepare() {
# Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch
# eautoconf # keep it disabled until we can ensure 2.59 is installed
# beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support
+ default
}
# possibly place modified contents of ${W}/src/build-system/config.site.ncbi and {W}/src/build-system/config.site.ex into ${W}/src/build-system/config.site
@@ -279,7 +279,7 @@ src_configure() {
--prefix="${EPREFIX}/usr" \
--libdir=/usr/lib64 \
--with-flat-makefile \
- ${myconf[@]} || die
+ ${myconf[@]} || die "gcc 7 or newer were not used by upstream hence unsupported"
#--without-debug \
# --with-bin-release \
# --with-bincopy \
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild
index 4622ac976..40d060bf5 100644
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.2.31.ebuild
@@ -1,13 +1,12 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
PYTHON_COMPAT=( python2_7 )
inherit eutils flag-o-matic multilib python-single-r1 toolchain-funcs
-MY_PV="2.2.30"
MY_P="ncbi-blast-${PV}+-src"
# workdir/ncbi-blast-2.2.30+-src
# ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-src.tar.gz
@@ -137,6 +136,7 @@ src_prepare() {
# Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch
# eautoconf # keep it disabled until we can ensure 2.59 is installed
# beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support
+ default
}
# possibly place modified contents of ${W}/src/build-system/config.site.ncbi and {W}/src/build-system/config.site.ex into ${W}/src/build-system/config.site
@@ -282,7 +282,7 @@ src_configure() {
--prefix="${EPREFIX}/usr" \
--libdir=/usr/lib64 \
--with-flat-makefile \
- ${myconf[@]} || die
+ ${myconf[@]} || die "gcc 7 or newer were not used by upstream hence unsupported"
#--without-debug \
# --with-bin-release \
# --with-bincopy \
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild b/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
index 6adbefad3..0a826b779 100644
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
@@ -1,13 +1,12 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
PYTHON_COMPAT=( python2_7 )
inherit eutils flag-o-matic multilib python-single-r1 toolchain-funcs
-MY_PV="2.3.0"
MY_P="ncbi-blast-${PV}+-src"
# workdir/ncbi-blast-2.2.30+-src
# ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-src.tar.gz
@@ -138,6 +137,7 @@ src_prepare() {
# Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch
# eautoconf # keep it disabled until we can ensure 2.59 is installed
# beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support
+ default
}
# possibly place modified contents of ${W}/src/build-system/config.site.ncbi and {W}/src/build-system/config.site.ex into ${W}/src/build-system/config.site
diff --git a/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild b/sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild
similarity index 99%
copy from sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
copy to sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild
index 6adbefad3..c91a5d490 100644
--- a/sci-biology/ncbi-blast+/ncbi-blast+-2.6.0.ebuild
+++ b/sci-biology/ncbi-blast+/ncbi-blast+-2.8.1.ebuild
@@ -1,13 +1,12 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
PYTHON_COMPAT=( python2_7 )
inherit eutils flag-o-matic multilib python-single-r1 toolchain-funcs
-MY_PV="2.3.0"
MY_P="ncbi-blast-${PV}+-src"
# workdir/ncbi-blast-2.2.30+-src
# ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-src.tar.gz
@@ -67,7 +66,8 @@ DEPEND="
xpm? ( x11-libs/libXpm )
dev-libs/lzo
app-arch/bzip2
- dev-libs/libpcre"
+ dev-libs/libpcre
+ dev-db/lmdb"
# USE flags which should be added somehow: wxWindows wxWidgets SP ORBacus ODBC OEChem sge
# Intentionally omitted USE flags:
# ftds? ( dev-db/freetds ) # support for outside FreeTDS installations is currently broken.
@@ -138,6 +138,7 @@ src_prepare() {
# Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch
# eautoconf # keep it disabled until we can ensure 2.59 is installed
# beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support
+ default
}
# possibly place modified contents of ${W}/src/build-system/config.site.ncbi and {W}/src/build-system/config.site.ex into ${W}/src/build-system/config.site
next reply other threads:[~2019-03-25 12:16 UTC|newest]
Thread overview: 23+ messages / expand[flat|nested] mbox.gz Atom feed top
2019-03-25 12:16 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2022-01-25 19:15 [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-blast+/ Andrew Ammerlaan
2021-12-16 11:07 Andrew Ammerlaan
2021-08-31 9:45 Andrew Ammerlaan
2021-07-03 10:44 Andrew Ammerlaan
2021-03-16 18:57 Andrew Ammerlaan
2021-03-16 18:57 Andrew Ammerlaan
2021-02-01 4:36 Andrew Ammerlaan
2021-01-19 17:16 Andrew Ammerlaan
2021-01-19 16:26 Andrew Ammerlaan
2021-01-13 21:06 Andrew Ammerlaan
2021-01-10 19:09 Andrew Ammerlaan
2021-01-05 18:22 Andrew Ammerlaan
2019-03-28 21:54 Martin Mokrejs
2017-04-28 17:58 Martin Mokrejs
2016-09-10 17:25 Justin Lecher
2016-08-24 11:40 Justin Lecher
2016-08-24 11:40 Justin Lecher
2016-02-11 18:53 Martin Mokrejs
2016-01-06 8:49 Justin Lecher
2015-07-17 0:40 Andrew Savchenko
2015-02-18 16:41 Justin Lecher
2015-01-15 17:00 Christoph Junghans
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